Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g37980 Fragaria vesca HOM05D006402 ORTHO05D008099 7.8e-72 273.9 155 100.0
FAN20G3208 Fragaria x ananassa HOM05D006402 ORTHO05D008099 5.8e-67 257.7 155 96.8
FAN27G3062 Fragaria x ananassa HOM05D006402 ORTHO05D008099 3.7e-66 255.0 155 95.5
RcHm_v2.0_Chr6g0303641 Rosa chinensis HOM05D006402 ORTHO05D008099 5.1e-63 244.6 157 91.1
Prupe.1G359800 Prunus persica HOM05D006402 ORTHO05D008099 2.0e-59 232.6 152 81.6
MD08G1008000 Malus domestica HOM05D006402 ORTHO05D008099 7.8e-56 220.7 153 80.4
CiPaw.08G069100 Carya illinoinensis HOM05D006402 ORTHO05D008099 5.1e-55 218.0 150 73.3
Haze_22699 Corylus avellana HOM05D006402 ORTHO05D008099 6.4e-50 201.1 153 69.3
Manes.05G142900 Manihot esculenta HOM05D006402 ORTHO05D008099 1.4e-49 199.9 154 69.5
TWI14G1330 Tripterygium wilfordii HOM05D006402 ORTHO05D008099 1.9e-49 199.5 153 76.5
Potri.002G016600 Populus trichocarpa HOM05D006402 ORTHO05D008099 3.5e-48 195.3 157 65.0
THA.LOC104811442 Tarenaya hassleriana HOM05D006402 ORTHO05D008099 3.5e-48 195.3 157 65.6
Thecc.08G051300 Theobroma cacao HOM05D006402 ORTHO05D008099 3.5e-48 195.3 134 82.1
Cfa014004 Carpinus fangiana HOM05D006402 ORTHO05D008099 6.0e-48 194.5 152 67.1
AL2G36080 Arabidopsis lyrata HOM05D006402 ORTHO05D008099 7.8e-48 194.1 160 68.1
Cpa.g.sc81.101 Carica papaya HOM05D006402 ORTHO05D008099 1.0e-47 193.7 152 67.1
Sabra02G0013300 Salix brachista HOM05D006402 ORTHO05D008099 3.0e-47 192.2 154 65.6
Atru.chr13.220 Acer truncatum HOM05D006402 ORTHO05D008099 3.9e-47 191.8 146 76.0
COL.COLO4_26087 Corchorus olitorius HOM05D006402 ORTHO05D008099 8.7e-47 190.7 134 73.9
PGR142G1353 Punica granatum HOM05D006402 ORTHO05D008099 8.7e-47 190.7 155 65.8
QL02p012927 Quercus lobata HOM05D006402 ORTHO05D008099 1.9e-46 189.5 155 65.8
Duzib093G1673 Durio zibethinus HOM05D006402 ORTHO05D008099 2.5e-46 189.1 140 69.3
arahy.Tifrunner.gnm1.ann1.KWDT0T Arachis hypogaea HOM05D006402 ORTHO05D008099 7.3e-46 187.6 153 62.7
arahy.Tifrunner.gnm1.ann1.R93WT9 Arachis hypogaea HOM05D006402 ORTHO05D008099 7.3e-46 187.6 157 65.0
CANSAT25G3089 Cannabis sativa HOM05D006402 ORTHO05D008099 7.3e-46 187.6 149 67.1
Aa31LG4G6170 Aethionema arabicum HOM05D006402 ORTHO05D008099 9.6e-46 187.2 156 62.2
Gohir.A06G001000 Gossypium hirsutum HOM05D006402 ORTHO05D008099 9.6e-46 187.2 139 69.8
Sp5g31180 Schrenkiella parvula HOM05D006402 ORTHO05D008099 3.6e-45 185.3 153 65.4
AT1G76060 Arabidopsis thaliana HOM05D006402 ORTHO05D008099 4.8e-45 184.9 153 66.7
Cc10_g01150 Coffea canephora HOM05D006402 ORTHO05D008099 4.8e-45 184.9 123 74.8
Peaxi162Scf00174g00075 Petunia axillaris HOM05D006402 ORTHO05D008099 6.2e-45 184.5 153 64.1
CARHR069600 Cardamine hirsuta HOM05D006402 ORTHO05D008099 8.1e-45 184.1 153 63.4
Nitab4.5_0003030g0100 Nicotiana tabacum HOM05D006402 ORTHO05D008099 1.1e-44 183.7 152 63.8
A07p41620 Brassica napus HOM05D006402 ORTHO05D008099 1.8e-44 183.0 161 62.1
BraA07t31691Z Brassica rapa HOM05D006402 ORTHO05D008099 1.8e-44 183.0 161 62.1
Gorai.010G001200 Gossypium raimondii HOM05D006402 ORTHO05D008099 2.4e-44 182.6 133 72.2
BcaC08g47098 Brassica carinata HOM05D006402 ORTHO05D008099 3.1e-44 182.2 160 62.5
MELO3C011341.2 Cucumis melo HOM05D006402 ORTHO05D008099 4.0e-44 181.8 125 72.0
TAR628G1405 Trochodendron aralioides HOM05D006402 ORTHO05D008099 5.3e-44 181.4 151 62.9
Ciclev10002722m.g Citrus clementina HOM05D006402 ORTHO05D008099 6.9e-44 181.0 148 64.2
Thhalv10019271m.g Eutrema salsugineum HOM05D006402 ORTHO05D008099 6.9e-44 181.0 151 64.2
A02p20400 Brassica napus HOM05D006402 ORTHO05D008099 9.0e-44 180.6 160 63.1
Carub.0002s2294 Capsella rubella HOM05D006402 ORTHO05D008099 9.0e-44 180.6 160 63.8
Rhsim07G0248600 Rhododendron simsii HOM05D006402 ORTHO05D008099 9.0e-44 180.6 128 70.3
Lj4C17T8 Lonicera japonica HOM05D006402 ORTHO05D008099 1.2e-43 180.3 155 60.6
Sopen04g035580 Solanum pennellii HOM05D006402 ORTHO05D008099 1.2e-43 180.3 153 62.7
PGSC0003DMG400009954 Solanum tuberosum HOM05D006402 ORTHO05D008099 1.5e-43 179.9 153 62.7
CAN.G311.71 Capsicum annuum HOM05D006402 ORTHO05D008099 2.0e-43 179.5 153 62.1
Nn6g34597 Nelumbo nucifera HOM05D006402 ORTHO05D008099 2.0e-43 179.5 135 68.1
C06p50000 Brassica napus HOM05D006402 ORTHO05D008099 2.6e-43 179.1 164 61.0
CsaV3_2G024420 Cucumis sativus L. HOM05D006402 ORTHO05D008099 2.6e-43 179.1 125 84.0
Gorai.006G031900 Gossypium raimondii HOM05D006402 ORTHO05D008099 2.6e-43 179.1 139 71.2
BolC6t40039H Brassica oleracea HOM05D006402 ORTHO05D008099 4.4e-43 178.3 164 61.0
AUR62016156 Chenopodium quinoa HOM05D006402 ORTHO05D008099 4.4e-43 178.3 148 62.8
Solyc04g081940.3 Solanum lycopersicum HOM05D006402 ORTHO05D008099 4.4e-43 178.3 153 62.1
Sc02g0008870 Simmondsia chinensis HOM05D006402 ORTHO05D008099 5.8e-43 177.9 131 69.5
SalBow6G2408 Salvia bowleyana HOM05D006402 ORTHO05D008099 7.6e-43 177.6 129 71.3
Sed0012705 Sechium edule HOM05D006402 ORTHO05D008099 7.6e-43 177.6 125 69.6
Aqoxy6G00455 Aquilegia oxysepala HOM05D006402 ORTHO05D008099 9.9e-43 177.2 132 65.9
Gohir.A09G028000 Gossypium hirsutum HOM05D006402 ORTHO05D008099 1.7e-42 176.4 130 70.8
EL10Ac1g02084 Beta vulgaris HOM05D006402 ORTHO05D008099 2.2e-42 176.0 148 60.8
PGSC0003DMG400012651 Solanum tuberosum HOM05D006402 ORTHO05D008099 2.2e-42 176.0 124 68.5
AUR62036301 Chenopodium quinoa HOM05D006402 ORTHO05D008099 2.9e-42 175.6 148 63.5
SalBow7G2419 Salvia bowleyana HOM05D006402 ORTHO05D008099 2.9e-42 175.6 129 70.5
Dinv18455 Davidia involucrata HOM05D006402 ORTHO05D008099 3.8e-42 175.3 141 66.7
Eucgr.F01698 Eucalyptus grandis HOM05D006402 ORTHO05D008099 3.8e-42 175.3 156 69.9
Solyc02g085937.1 Solanum lycopersicum HOM05D006402 ORTHO05D008099 3.8e-42 175.3 123 68.3
Sopen02g030620 Solanum pennellii HOM05D006402 ORTHO05D008099 3.8e-42 175.3 123 69.1
ClCG08G014030 Citrullus lanatus HOM05D006402 ORTHO05D008099 4.9e-42 174.9 123 69.9
Sc02g0008830 Simmondsia chinensis HOM05D006402 ORTHO05D008099 4.9e-42 174.9 131 71.0
Psat6g001160 Pisum sativum HOM05D006402 ORTHO05D008099 6.4e-42 174.5 139 72.7
CSS0047659 Camellia sinensis var. sinensis HOM05D006402 ORTHO05D008099 8.4e-42 174.1 152 61.8
unitig_32.g11245 Utricularia gibba HOM05D006402 ORTHO05D008099 8.4e-42 174.1 140 65.0
Hma1.2p1_0023F.1_g015780 Hydrangea macrophylla HOM05D006402 ORTHO05D008099 1.9e-41 172.9 125 69.6
HanXRQChr14g0429471 Helianthus annuus HOM05D006402 ORTHO05D008099 2.4e-41 172.6 124 69.4
SGA_v2.0_scaffold292G47394 Striga asiatica HOM05D006402 ORTHO05D008099 3.2e-41 172.2 128 66.4
Sed0017306 Sechium edule HOM05D006402 ORTHO05D008099 4.2e-41 171.8 125 67.2
Ca_13483_v3 Cicer arietinum L. HOM05D006402 ORTHO05D008099 1.2e-40 170.2 150 64.0
Lalb_Chr23g0266011 Lupinus albus HOM05D006402 ORTHO05D008099 2.7e-40 169.1 131 61.8
CDE05G2406 Ceratophyllum demersum HOM05D000228 ORTHO05D001122 6.0e-40 167.9 145 62.8
MSTRG.1145 Avicennia marina HOM05D006402 ORTHO05D008099 1.3e-39 166.8 124 67.7
TPR.G26406 Trifolium pratense HOM05D006402 ORTHO05D008099 1.3e-39 166.8 149 66.4
ECA238G1428 Erigeron canadensis HOM05D006402 ORTHO05D008099 1.7e-39 166.4 124 68.5
Migut.C00897 Erythranthe guttata HOM05D006402 ORTHO05D008099 1.7e-39 166.4 125 68.8
BcaC03g15641 Brassica carinata HOM05D006402 ORTHO05D008099 2.3e-39 166.0 159 59.1
VMungo0647G0728 Vigna mungo HOM05D006402 ORTHO05D008099 2.3e-39 166.0 147 59.9
DCAR_007723 Daucus carota HOM05D006402 ORTHO05D008099 3.9e-39 165.2 123 63.4
Gohir.D09G027401 Gossypium hirsutum HOM05D006402 ORTHO05D008099 5.1e-39 164.9 132 68.2
PSO675G2459 Papaver somniferum HOM05D006402 ORTHO05D008099 2.5e-38 162.5 124 64.5
Glyma.17G261100 Glycine max HOM05D006402 ORTHO05D008099 4.3e-38 161.8 141 58.2
Lj5g0026723 Lotus japonicus HOM05D006402 ORTHO05D008099 4.3e-38 161.8 158 62.0
Phvul.001G003000 Phaseolus vulgaris HOM05D006402 ORTHO05D008099 1.3e-37 160.2 144 59.0
Medtr1g026078 Medicago truncatula HOM05D006402 ORTHO05D008099 2.8e-37 159.1 125 74.4
Lsat_1_v5_gn_2_6761 Lactuca sativa HOM05D006402 ORTHO05D008099 3.6e-37 158.7 125 75.2
Glyma.09G042800 Glycine max HOM05D006402 ORTHO05D008099 4.8e-37 158.3 141 57.4
PSO541G5119 Papaver somniferum HOM05D006402 ORTHO05D008099 1.8e-36 156.4 126 61.9
MBI03_g11314_MAGBIO Magnolia biondii HOM05D006402 ORTHO05D008099 9.0e-36 154.1 155 54.8
HPP92_013449 Vanilla planifolia HOM05D006402 ORTHO05D008099 9.0e-36 154.1 124 62.9
ATR0580G246 Amborella trichopoda HOM05D006402 ORTHO05D008099 2.6e-35 152.5 126 66.7
SHI08020 Sapria himalayana HOM05D006402 ORTHO05D008099 2.6e-35 152.5 149 55.7
Actinidia29765 Actinidia chinensis HOM05D006402 ORTHO05D008099 8.4e-34 147.5 154 58.4
ATR0680G026 Amborella trichopoda HOM05D006402 ORTHO05D008099 4.2e-33 145.2 138 56.5
BolC2t09355H Brassica oleracea HOM05D006402 ORTHO05D008099 4.2e-33 145.2 159 53.5
C02p33500 Brassica napus HOM05D006402 ORTHO05D008099 5.4e-33 144.8 159 53.5
SEGI_22650 Sequoiadendron giganteum HOM05D006402 ORTHO05D008099 1.2e-32 143.7 126 56.3
Os03g0136600 Oryza sativa ssp. japonica HOM05D006402 ORTHO05D008099 4.6e-32 141.7 153 54.2
Zm00001eb002920 Zea mays HOM05D006402 ORTHO05D008099 7.9e-32 141.0 129 58.9
BraA02t07072Z Brassica rapa HOM05D006402 ORTHO05D008099 2.5e-30 136.0 91 76.9
Pp3c14_25160 Physcomitrium patens HOM05D006402 ORTHO05D008099 9.6e-30 134.0 131 52.7
SMO358G0213 Selaginella moellendorffii HOM05D006402 ORTHO05D008099 3.0e-23 112.5 121 45.5
AagrBONN_evm.TU.Sc2ySwM_228.4698 Anthoceros agrestis HOM05D006402 ORTHO05D008099 3.9e-23 112.1 120 50.0
BcaC08g47099 Brassica carinata HOM05D006402 ORTHO05D008099 5.7e-22 108.2 103 58.3
PRCOL_00001167 Prasinoderma coloniale HOM05D006402 ORTHO05D008099 2.4e-20 102.8 87 59.8
Mapoly0186s0006 Marchantia polymorpha HOM05D006402 ORTHO05D008099 3.1e-20 102.4 124 43.5
BcaC08g47297 Brassica carinata HOM05D006402 ORTHO05D008099 5.3e-20 101.7 152 42.1
MD15G1006900 Malus domestica HOM05D006402 ORTHO05D008099 1.2e-19 100.5 84 64.3
QL08p014343 Quercus lobata HOM05D006402 ORTHO05D008099 2.6e-19 99.4 134 46.3
CBR_g51533 Chara braunii HOM05D006402 ORTHO05D008099 1.3e-18 97.1 117 45.3
Eucgr.F01697 Eucalyptus grandis HOM05D006402 ORTHO05D008099 2.9e-18 95.9 80 61.2
MCO02G370 Micromonas commoda HOM05D006402 ORTHO05D008099 1.0e-15 87.4 78 51.3
Cre01.g028150 Chlamydomonas reinhardtii HOM05D006402 ORTHO05D008099 1.8e-15 86.7 120 37.5
Sed0026898 Sechium edule HOM05D006402 ORTHO05D008099 4.5e-11 72.0 117 39.3
Glyma.14G222200 Glycine max HOM05D006402 ORTHO05D008099 3.0e-07 59.3 80 47.5


User provided reference genes

Program Settings