Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g37800 Fragaria vesca HOM05D005792 ORTHO05D007171 3.5e-177 624.8 305 100.0
RcHm_v2.0_Chr6g0303911 Rosa chinensis HOM05D005792 ORTHO05D007171 5.9e-164 580.9 302 93.0
Prupe.1G357300 Prunus persica HOM05D005792 ORTHO05D007171 1.7e-147 526.2 304 83.2
FAN27G1567 Fragaria x ananassa HOM05D000201 ORTHO05D004673 9.4e-146 520.4 280 92.9
FAN15G3656 Fragaria x ananassa HOM05D000201 ORTHO05D004673 1.4e-141 506.5 280 90.0
MD08G1005200 Malus domestica HOM05D005792 ORTHO05D007171 1.8e-141 506.1 307 80.5
Sed0026749 Sechium edule HOM05D005792 ORTHO05D007171 5.2e-136 488.0 303 76.2
CsaV3_2G024540 Cucumis sativus L. HOM05D005792 ORTHO05D007171 6.7e-136 487.6 306 75.8
Potri.005G247600 Populus trichocarpa HOM05D005792 ORTHO05D007171 8.8e-136 487.3 304 76.0
Sed0027939 Sechium edule HOM05D005792 ORTHO05D007171 5.7e-135 484.6 303 74.9
CiPaw.08G070700 Carya illinoinensis HOM05D005792 ORTHO05D007171 7.5e-135 484.2 306 74.8
CiPaw.08G070500 Carya illinoinensis HOM05D005792 ORTHO05D007171 4.8e-134 481.5 306 74.8
Manes.18G007700 Manihot esculenta HOM05D005792 ORTHO05D007171 4.1e-133 478.4 303 75.2
Glyma.06G019900 Glycine max HOM05D005792 ORTHO05D007171 9.1e-133 477.2 304 75.3
MELO3C011330.2 Cucumis melo HOM05D005792 ORTHO05D007171 1.6e-132 476.5 317 73.2
QL02p013536 Quercus lobata HOM05D005792 ORTHO05D007171 4.5e-132 474.9 312 74.0
VMungo1309G0997 Vigna mungo HOM05D005792 ORTHO05D007171 4.5e-132 474.9 303 75.6
Lj1g0011663 Lotus japonicus HOM05D005792 ORTHO05D007171 1.0e-131 473.8 304 74.3
THA.LOC104813765 Tarenaya hassleriana HOM05D005792 ORTHO05D007171 1.7e-131 473.0 303 75.2
Eucgr.F01710 Eucalyptus grandis HOM05D005792 ORTHO05D007171 3.8e-131 471.9 302 75.2
CANSAT51G0003 Cannabis sativa HOM05D005792 ORTHO05D007171 6.5e-131 471.1 306 74.5
Psat5g010960 Pisum sativum HOM05D005792 ORTHO05D007171 6.5e-131 471.1 304 74.3
Atru.chr13.181 Acer truncatum HOM05D005792 ORTHO05D007171 1.9e-130 469.5 307 73.6
Lalb_Chr23g0265871 Lupinus albus HOM05D005792 ORTHO05D007171 1.9e-130 469.5 304 73.7
TWI36G1625 Tripterygium wilfordii HOM05D005792 ORTHO05D007171 1.9e-130 469.5 304 74.3
Ca_15448_v3 Cicer arietinum L. HOM05D005792 ORTHO05D007171 3.2e-130 468.8 306 74.2
Glyma.04G019600 Glycine max HOM05D005792 ORTHO05D007171 4.2e-130 468.4 310 73.5
Medtr3g115040 Medicago truncatula HOM05D005792 ORTHO05D007171 4.2e-130 468.4 304 75.0
Thecc.08G054700 Theobroma cacao HOM05D005792 ORTHO05D007171 1.2e-129 466.8 302 74.5
PGR083G0297 Punica granatum HOM05D005792 ORTHO05D007171 1.4e-128 463.4 302 74.8
Manes.05G141100 Manihot esculenta HOM05D005792 ORTHO05D007171 1.8e-128 463.0 305 72.8
Dinv39569 Davidia involucrata HOM05D005792 ORTHO05D007171 3.0e-128 462.2 302 73.8
GSVIVG01008709001 Vitis vinifera HOM05D005792 ORTHO05D007171 8.8e-128 460.7 302 72.5
Duzib093G0813 Durio zibethinus HOM05D005792 ORTHO05D007171 2.0e-127 459.5 302 72.2
Gorai.009G268300 Gossypium raimondii HOM05D005792 ORTHO05D007171 3.4e-127 458.8 302 73.5
BcaC08g47286 Brassica carinata HOM05D005792 ORTHO05D007171 4.4e-127 458.4 304 72.4
Atru.chr13.183 Acer truncatum HOM05D005792 ORTHO05D007171 1.3e-126 456.8 301 72.1
Nn5g30890 Nelumbo nucifera HOM05D005792 ORTHO05D007171 1.3e-126 456.8 304 73.0
Thhalv10018917m.g Eutrema salsugineum HOM05D005792 ORTHO05D007171 1.7e-126 456.4 303 71.9
arahy.Tifrunner.gnm1.ann1.NZM2IS Arachis hypogaea HOM05D005792 ORTHO05D007171 2.8e-126 455.7 338 67.2
Cfa014030 Carpinus fangiana HOM05D000201 ORTHO05D004673 2.8e-126 455.7 279 78.5
Gohir.D05G256800 Gossypium hirsutum HOM05D005792 ORTHO05D007171 6.3e-126 454.5 302 72.8
AL2G36210 Arabidopsis lyrata HOM05D005792 ORTHO05D007171 1.1e-125 453.8 304 71.7
AT1G76150 Arabidopsis thaliana HOM05D005792 ORTHO05D007171 1.4e-125 453.4 304 71.7
Sp5g31280 Schrenkiella parvula HOM05D005792 ORTHO05D007171 4.1e-125 451.8 304 72.4
Nitab4.5_0000498g0200 Nicotiana tabacum HOM05D005792 ORTHO05D007171 5.4e-125 451.4 306 71.6
Carub.0002s2304 Capsella rubella HOM05D005792 ORTHO05D007171 1.6e-124 449.9 304 71.4
Nitab4.5_0002353g0010 Nicotiana tabacum HOM05D005792 ORTHO05D007171 3.5e-124 448.7 301 71.4
Ciclev10001939m.g Citrus clementina HOM05D005792 ORTHO05D007171 7.7e-124 447.6 307 72.0
CAN.G401.3 Capsicum annuum HOM05D005792 ORTHO05D007171 1.0e-123 447.2 303 71.0
Sc26g0004560 Simmondsia chinensis HOM05D005792 ORTHO05D007171 2.9e-123 445.7 302 72.2
Migut.C00916 Erythranthe guttata HOM05D005792 ORTHO05D007171 5.0e-123 444.9 304 70.4
HanXRQChr14g0429001 Helianthus annuus HOM05D005792 ORTHO05D007171 5.0e-123 444.9 306 70.6
CSS0018708 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 1.1e-122 443.7 302 70.5
CARHR069700 Cardamine hirsuta HOM05D005792 ORTHO05D007171 1.9e-122 443.0 304 70.4
CSS0011850 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 3.2e-122 442.2 302 69.9
EL10Ac1g02028 Beta vulgaris HOM05D005792 ORTHO05D007171 1.2e-121 440.3 302 69.5
Haze_22736 Corylus avellana HOM05D005792 ORTHO05D007171 2.7e-121 439.1 287 74.2
Aqoxy6G01867 Aquilegia oxysepala HOM05D005792 ORTHO05D007171 3.6e-121 438.7 306 69.6
vmacro21840 Vaccinium macrocarpon HOM05D005792 ORTHO05D007171 3.6e-121 438.7 333 64.6
A07p41720 Brassica napus HOM05D005792 ORTHO05D007171 4.7e-121 438.3 304 70.7
ECA238G1749 Erigeron canadensis HOM05D005792 ORTHO05D007171 4.7e-121 438.3 295 70.8
CSS0016825 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 8.0e-121 437.6 307 69.4
C06p50100 Brassica napus HOM05D005792 ORTHO05D007171 1.4e-120 436.8 304 70.1
BraA07t31701Z Brassica rapa HOM05D005792 ORTHO05D007171 1.8e-120 436.4 304 70.1
PSO541G2987 Papaver somniferum HOM05D005792 ORTHO05D007171 1.8e-120 436.4 295 69.2
Cc10_g00990 Coffea canephora HOM05D005792 ORTHO05D007171 6.8e-120 434.5 311 68.8
AUR62013837 Chenopodium quinoa HOM05D005792 ORTHO05D007171 8.8e-120 434.1 302 67.9
Hma1.2p1_1260F.1_g270990 Hydrangea macrophylla HOM05D005792 ORTHO05D007171 2.0e-119 433.0 302 71.2
Solyc12g094450.3 Solanum lycopersicum HOM05D005792 ORTHO05D007171 5.7e-119 431.4 302 68.9
Atru.chr1.2256 Acer truncatum HOM05D005792 ORTHO05D007171 7.5e-119 431.0 307 69.1
Duzib116G0262 Durio zibethinus HOM05D005792 ORTHO05D007171 7.5e-119 431.0 273 73.6
BcaNung05119 Brassica carinata HOM05D005792 ORTHO05D007171 2.2e-118 429.5 304 69.1
Sopen12g031340 Solanum pennellii HOM05D005792 ORTHO05D007171 3.7e-118 428.7 302 68.5
Peaxi162Scf00064g00910 Petunia axillaris HOM05D005792 ORTHO05D007171 8.3e-118 427.6 304 70.1
Hund05134 Selenicereus undatus HOM05D005792 ORTHO05D007171 1.1e-117 427.2 302 67.9
Lsat_1_v5_gn_2_5940 Lactuca sativa HOM05D005792 ORTHO05D007171 1.4e-117 426.8 302 68.9
ClCG08G013930 Citrullus lanatus HOM05D005792 ORTHO05D007171 1.6e-116 423.3 343 63.0
PGSC0003DMG400029326 Solanum tuberosum HOM05D005792 ORTHO05D007171 7.7e-116 421.0 331 63.4
Aa31LG4G6270 Aethionema arabicum HOM05D005792 ORTHO05D007171 2.3e-115 419.5 304 67.4
Lj4C15T2 Lonicera japonica HOM05D005792 ORTHO05D007171 5.0e-115 418.3 306 67.3
Gohir.A05G255200 Gossypium hirsutum HOM05D005792 ORTHO05D007171 1.1e-114 417.2 307 68.1
unitig_747.g21523 Utricularia gibba HOM05D005792 ORTHO05D007171 1.1e-114 417.2 299 67.9
Rhsim06G0009800 Rhododendron simsii HOM05D005792 ORTHO05D007171 5.6e-114 414.8 302 66.6
SalBow7G0964 Salvia bowleyana HOM05D005792 ORTHO05D007171 7.3e-114 414.5 291 66.7
BolC6t40050H Brassica oleracea HOM05D005792 ORTHO05D007171 2.8e-113 412.5 296 69.3
MBI08_g05391_MAGBIO Magnolia biondii HOM05D005792 ORTHO05D007171 1.7e-110 403.3 283 69.6
Actinidia15473 Actinidia chinensis HOM05D005792 ORTHO05D007171 1.8e-109 399.8 329 61.7
Os09g0544900 Oryza sativa ssp. japonica HOM05D005792 ORTHO05D007171 2.4e-109 399.4 304 64.5
TAR625G0413 Trochodendron aralioides HOM05D005792 ORTHO05D007171 1.6e-108 396.7 284 70.8
DCAR_016749 Daucus carota HOM05D005792 ORTHO05D007171 5.9e-108 394.8 360 56.7
SGA_v2.0_scaffold351G49656 Striga asiatica HOM05D005792 ORTHO05D007171 1.2e-105 387.1 312 62.8
Pp3c4_24330 Physcomitrium patens HOM05D005792 ORTHO05D007171 9.5e-98 360.9 316 57.9
PSO675G2870 Papaver somniferum HOM05D005792 ORTHO05D007171 6.8e-96 354.8 293 59.7
BcaC08g47109 Brassica carinata HOM05D005792 ORTHO05D007171 1.2e-95 354.0 298 60.4
Nitab4.5_0000588g0300 Nicotiana tabacum HOM05D005792 ORTHO05D007171 1.1e-93 347.4 304 58.6
Haze_22722 Corylus avellana HOM05D005792 ORTHO05D007171 5.4e-93 345.1 283 64.0
Ah.11g040640 Amaranthus hybridus HOM05D005792 ORTHO05D007171 2.1e-92 343.2 302 56.6
COL.COLO4_26053 Corchorus olitorius HOM05D005792 ORTHO05D007171 2.1e-92 343.2 307 58.0
DCAR_013899 Daucus carota HOM05D005792 ORTHO05D007171 3.5e-92 342.4 300 57.7
Phvul.009G020900 Phaseolus vulgaris HOM05D005792 ORTHO05D007171 2.5e-90 336.3 216 73.1
SHI08027 Sapria himalayana HOM05D005792 ORTHO05D007171 1.1e-88 330.9 276 58.7
Gohir.D02G118150 Gossypium hirsutum HOM05D005792 ORTHO05D007171 3.4e-87 325.9 223 69.1
SMO174G0111 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 5.8e-87 325.1 306 56.2
AUR62036768 Chenopodium quinoa HOM05D005792 ORTHO05D007171 4.9e-86 322.0 281 57.3
Zm00001eb104070 Zea mays HOM05D005792 ORTHO05D007171 2.3e-83 313.2 224 67.4
arahy.Tifrunner.gnm1.ann1.CIDL5D Arachis hypogaea HOM05D005792 ORTHO05D007171 4.3e-74 282.3 199 67.8
ATR0661G150 Amborella trichopoda HOM05D005792 ORTHO05D007171 3.6e-73 279.3 192 71.4
Mapoly0135s0031 Marchantia polymorpha HOM05D005792 ORTHO05D007171 2.0e-71 273.5 296 48.3
MSTRG.25290 Avicennia marina HOM05D005792 ORTHO05D007171 1.9e-69 266.9 195 63.6
SEGI_22358 Sequoiadendron giganteum HOM05D005792 ORTHO05D007171 3.5e-68 262.7 200 65.5
TAR625G0324 Trochodendron aralioides HOM05D005792 ORTHO05D007171 4.6e-68 262.3 164 77.4
Sabra02G0010800 Salix brachista HOM05D005792 ORTHO05D007171 1.9e-66 256.9 235 57.9
Oeu021471.1 Olea europaea HOM05D005792 ORTHO05D007171 5.6e-66 255.4 193 64.8
Zm00001eb321160 Zea mays HOM05D005792 ORTHO05D007171 1.5e-63 247.3 218 57.3
AagrBONN_evm.TU.Sc2ySwM_117.3246 Anthoceros agrestis HOM05D005792 ORTHO05D007171 7.6e-55 218.4 203 55.2
TPR.G38109 Trifolium pratense HOM05D005792 ORTHO05D007171 7.1e-53 211.8 302 42.4
CBR_g50912 Chara braunii HOM05D005792 ORTHO05D007171 1.3e-51 207.6 389 36.2
TPR.G753 Trifolium pratense HOM05D005792 ORTHO05D007171 5.1e-51 205.7 137 73.0
CDE05G1591 Ceratophyllum demersum HOM05D005792 ORTHO05D007171 1.6e-49 200.7 152 60.5
Actinidia17028 Actinidia chinensis HOM05D005792 ORTHO05D007171 3.4e-47 193.0 166 58.4
CSS0030340 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 1.0e-38 164.9 131 63.4
Haze_26844 Corylus avellana HOM05D005792 ORTHO05D007171 1.4e-37 161.0 294 36.4
TAR625G0970 Trochodendron aralioides HOM05D005792 ORTHO05D007171 2.6e-34 150.2 102 71.6
HPP92_014386 Vanilla planifolia HOM05D005792 ORTHO05D007171 4.8e-33 146.0 113 61.1
Cre06.g308100 Chlamydomonas reinhardtii HOM05D005792 ORTHO05D007171 5.3e-32 142.5 286 33.2
Hund05135 Selenicereus undatus HOM05D005792 ORTHO05D007171 4.7e-28 129.4 274 32.1
SalBow6G2635 Salvia bowleyana HOM05D005792 ORTHO05D007171 3.3e-26 123.2 83 69.9
CBR_g22029 Chara braunii HOM05D005792 ORTHO05D007171 7.0e-24 115.5 87 59.8
SMO174G0016 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 4.8e-17 92.8 81 60.5
ATR0661G053 Amborella trichopoda HOM05D005792 ORTHO05D007171 1.1e-13 81.6 58 65.5
Mapoly0033s0029 Marchantia polymorpha HOM05D005792 ORTHO05D007171 9.4e-13 78.6 176 32.4
Sabra02G0010700 Salix brachista HOM05D000201 ORTHO05D000490 2.7e-12 77.0 57 61.4
SMO174G0053 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 1.2e-10 71.6 80 51.2
COL.COLO4_12452 Corchorus olitorius HOM05D005792 ORTHO05D007171 1.3e-09 68.2 67 53.7
SEGI_02138 Sequoiadendron giganteum HOM05D005792 ORTHO05D007171 2.4e-08 63.9 55 56.4
Cpa.g.sc26.236 Carica papaya HOM05D005792 ORTHO05D007171 1.2e-07 61.6 36 80.6


User provided reference genes

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