Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g36400 Fragaria vesca HOM05D001346 ORTHO05D001205 6.2e-116 421.0 244 100.0
FAN27G0859 Fragaria x ananassa HOM05D001346 ORTHO05D001205 4.6e-79 298.5 211 79.6
RcHm_v2.0_Chr6g0305501 Rosa chinensis HOM05D001346 ORTHO05D001205 6.1e-63 245.0 206 69.4
FAN20G2174 Fragaria x ananassa HOM05D001346 ORTHO05D001205 2.2e-44 183.3 135 80.0
Prupe.1G455300 Prunus persica HOM05D001346 ORTHO05D001205 6.3e-44 181.8 212 52.4
MD08G1123300 Malus domestica HOM05D001346 ORTHO05D001205 2.3e-41 173.3 131 72.5
MD15G1102300 Malus domestica HOM05D001346 ORTHO05D001205 5.5e-40 168.7 209 52.2
FAN15G0052 Fragaria x ananassa HOM05D001346 ORTHO05D001205 4.9e-36 155.6 132 69.7
QL12p025990 Quercus lobata HOM05D001346 ORTHO05D001205 1.2e-31 141.0 206 48.5
Oeu048005.1 Olea europaea HOM05D001346 ORTHO05D001205 4.0e-30 136.0 178 44.9
GSVIVG01035557001 Vitis vinifera HOM05D001346 ORTHO05D001205 5.2e-30 135.6 205 43.9
Haze_21805 Corylus avellana HOM05D001346 ORTHO05D001205 4.9e-28 129.0 130 58.5
Actinidia14153 Actinidia chinensis HOM05D001346 ORTHO05D001205 2.4e-27 126.7 180 44.4
Actinidia03568 Actinidia chinensis HOM05D001346 ORTHO05D001205 7.0e-27 125.2 183 45.4
CiPaw.07G209100 Carya illinoinensis HOM05D001346 ORTHO05D001205 9.2e-27 124.8 198 44.9
TAR383G0844 Trochodendron aralioides HOM05D001346 ORTHO05D001205 3.5e-26 122.9 148 51.4
Nn2g12732 Nelumbo nucifera HOM05D001346 ORTHO05D001205 1.3e-25 120.9 225 39.6
Hund03268 Selenicereus undatus HOM05D001346 ORTHO05D001205 1.7e-25 120.6 209 39.2
Nn8g41004 Nelumbo nucifera HOM05D001346 ORTHO05D001205 2.3e-25 120.2 202 42.6
Cfa013319 Carpinus fangiana HOM05D001346 ORTHO05D001205 1.9e-24 117.1 115 59.1
CAN.G940.2 Capsicum annuum HOM05D001346 ORTHO05D001205 5.6e-24 115.5 132 53.0
CSS0028076 Camellia sinensis var. sinensis HOM05D001346 ORTHO05D001205 1.2e-23 114.4 191 38.7
Migut.E01416 Erythranthe guttata HOM05D001346 ORTHO05D001205 1.6e-23 114.0 201 36.8
CSS0019127 Camellia sinensis var. sinensis HOM05D001346 ORTHO05D001205 3.6e-23 112.8 114 57.9
CSS0032436 Camellia sinensis var. sinensis HOM05D001346 ORTHO05D001205 4.7e-23 112.5 127 49.6
DCAR_004549 Daucus carota HOM05D001346 ORTHO05D001205 6.2e-23 112.1 131 52.7
Rhsim07G0170900 Rhododendron simsii HOM05D001346 ORTHO05D001205 6.2e-23 112.1 121 53.7
TWI63G0206 Tripterygium wilfordii HOM05D001346 ORTHO05D001205 6.2e-23 112.1 130 51.5
DCAR_000690 Daucus carota HOM05D001346 ORTHO05D001205 8.0e-23 111.7 182 43.4
TAR626G1392 Trochodendron aralioides HOM05D001346 ORTHO05D001205 8.0e-23 111.7 217 39.2
ClCG08G012480 Citrullus lanatus HOM05D001346 ORTHO05D001205 1.8e-22 110.5 203 42.4
Glyma.17G188500 Glycine max HOM05D001346 ORTHO05D001205 2.3e-22 110.2 127 51.2
HanXRQChr13g0412021 Helianthus annuus HOM05D001346 ORTHO05D001205 4.0e-22 109.4 187 39.0
PGSC0003DMG400014858 Solanum tuberosum HOM05D001346 ORTHO05D001205 6.8e-22 108.6 129 52.7
Aqoxy7G02713 Aquilegia oxysepala HOM05D001346 ORTHO05D001205 1.2e-21 107.8 149 47.0
CsaV3_2G031180 Cucumis sativus L. HOM05D001346 ORTHO05D001205 3.4e-21 106.3 202 41.6
Glyma.14G139700 Glycine max HOM05D001346 ORTHO05D001205 4.4e-21 105.9 129 49.6
Lsat_1_v5_gn_5_58820 Lactuca sativa HOM05D001346 ORTHO05D001205 4.4e-21 105.9 132 51.5
Manes.16G137300 Manihot esculenta HOM05D001346 ORTHO05D001205 5.8e-21 105.5 211 39.3
PSO170G2213 Papaver somniferum HOM05D001346 ORTHO05D001205 7.5e-21 105.1 204 43.1
Cc00_g11390 Coffea canephora HOM05D001346 ORTHO05D001205 9.8e-21 104.8 101 57.4
Nitab4.5_0028413g0010 Nicotiana tabacum HOM05D001346 ORTHO05D001205 1.3e-20 104.4 120 54.2
MSTRG.1615 Avicennia marina HOM05D001346 ORTHO05D001205 2.2e-20 103.6 178 41.0
CiPaw.08G021900 Carya illinoinensis HOM05D001346 ORTHO05D001205 2.2e-20 103.6 127 53.5
Nitab4.5_0003259g0120 Nicotiana tabacum HOM05D001346 ORTHO05D001205 8.3e-20 101.7 122 54.1
Glyma.06G079800 Glycine max HOM05D001346 ORTHO05D001205 1.1e-19 101.3 164 46.3
Psat5g023160 Pisum sativum HOM05D001346 ORTHO05D001205 1.1e-19 101.3 123 50.4
Potri.006G277800 Populus trichocarpa HOM05D001346 ORTHO05D001205 1.1e-19 101.3 135 51.1
Solyc08g006110.4 Solanum lycopersicum HOM05D001346 ORTHO05D001205 1.1e-19 101.3 129 50.4
Sopen08g002080 Solanum pennellii HOM05D001346 ORTHO05D001205 1.1e-19 101.3 129 50.4
MELO3C011167.2 Cucumis melo HOM05D001346 ORTHO05D001205 2.4e-19 100.1 200 41.0
HPP92_021889 Vanilla planifolia HOM05D001346 ORTHO05D001205 2.4e-19 100.1 127 49.6
Lj1g0023247 Lotus japonicus HOM05D001346 ORTHO05D001205 3.2e-19 99.8 151 45.0
TWI32G0972 Tripterygium wilfordii HOM05D001346 ORTHO05D001205 3.2e-19 99.8 141 48.2
TPR.G1350 Trifolium pratense HOM05D001346 ORTHO05D001205 5.4e-19 99.0 152 44.7
Peaxi162Scf00045g01458 Petunia axillaris HOM05D001346 ORTHO05D001205 7.0e-19 98.6 129 50.4
arahy.Tifrunner.gnm1.ann1.1EXE5V Arachis hypogaea HOM05D001346 ORTHO05D001205 2.1e-18 97.1 154 41.6
arahy.Tifrunner.gnm1.ann1.Z0EWEF Arachis hypogaea HOM05D001346 ORTHO05D001205 2.1e-18 97.1 154 41.6
PSO063G0752 Papaver somniferum HOM05D001346 ORTHO05D001205 2.7e-18 96.7 217 39.6
Lalb_Chr23g0269321 Lupinus albus HOM05D001346 ORTHO05D001205 3.5e-18 96.3 164 43.3
CANSAT25G2088 Cannabis sativa HOM05D001346 ORTHO05D001205 6.0e-18 95.5 189 46.6
TPR.G12118 Trifolium pratense HOM05D001346 ORTHO05D001205 7.8e-18 95.1 137 46.7
Cpa.g.sc244.3 Carica papaya HOM05D001346 ORTHO05D001205 1.0e-17 94.7 186 40.3
ECA240G2878 Erigeron canadensis HOM05D001346 ORTHO05D001205 1.3e-17 94.4 125 51.2
Os02g0175100 Oryza sativa ssp. japonica HOM05D001346 ORTHO05D001205 1.3e-17 94.4 102 52.0
Atru.chr7.2679 Acer truncatum HOM05D001346 ORTHO05D001205 1.7e-17 94.0 205 42.4
Psat6g006040 Pisum sativum HOM05D001346 ORTHO05D001205 2.3e-17 93.6 129 47.3
Glyma.04G078300 Glycine max HOM05D001346 ORTHO05D001205 3.0e-17 93.2 146 45.9
Ca_15633_v3 Cicer arietinum L. HOM05D001346 ORTHO05D001205 3.9e-17 92.8 153 43.8
Sed0003818 Sechium edule HOM05D001346 ORTHO05D001205 3.9e-17 92.8 193 45.1
VMungo0647G0675 Vigna mungo HOM05D001346 ORTHO05D001205 3.9e-17 92.8 133 47.4
Sc09g0007330 Simmondsia chinensis HOM05D001346 ORTHO05D001205 8.6e-17 91.7 127 44.1
VMungo1309G2286 Vigna mungo HOM05D001346 ORTHO05D001205 8.6e-17 91.7 164 43.9
Phvul.009G104100 Phaseolus vulgaris HOM05D001346 ORTHO05D001205 1.1e-16 91.3 164 43.3
EL10Ac2g03702 Beta vulgaris HOM05D001346 ORTHO05D001205 1.9e-16 90.5 129 46.5
Lj7A753T39 Lonicera japonica HOM05D001346 ORTHO05D001205 2.5e-16 90.1 81 58.0
Zm00001eb233420 Zea mays HOM05D001346 ORTHO05D001205 3.3e-16 89.7 185 35.7
SGA_v2.0_scaffold27G11656 Striga asiatica HOM05D001346 ORTHO05D001205 5.6e-16 89.0 201 37.3
Ca_12827_v3 Cicer arietinum L. HOM05D001346 ORTHO05D001205 7.3e-16 88.6 139 48.2
Medtr1g008990 Medicago truncatula HOM05D001346 ORTHO05D001205 7.3e-16 88.6 129 47.3
Thecc.09G003800 Theobroma cacao HOM05D001346 ORTHO05D001205 2.1e-15 87.0 182 37.9
Sabra06G0215400 Salix brachista HOM05D001346 ORTHO05D001205 3.6e-15 86.3 148 44.6
Oeu038305.1 Olea europaea HOM05D001346 ORTHO05D001205 4.7e-15 85.9 183 35.5
SGA_v2.0_scaffold54G19475 Striga asiatica HOM05D001346 ORTHO05D001205 4.7e-15 85.9 208 33.2
MSTRG.13936 Avicennia marina HOM05D001346 ORTHO05D001205 8.1e-15 85.1 133 45.1
AUR62038742 Chenopodium quinoa HOM05D001346 ORTHO05D001205 1.1e-14 84.7 125 46.4
HanXRQChr03g0082851 Helianthus annuus HOM05D001346 ORTHO05D001205 1.1e-14 84.7 125 45.6
AUR62020638 Chenopodium quinoa HOM05D001346 ORTHO05D001205 1.4e-14 84.3 125 46.4
Dinv12963 Davidia involucrata HOM05D001346 ORTHO05D001205 3.1e-14 83.2 81 55.6
Manes.03G001600 Manihot esculenta HOM05D001346 ORTHO05D001205 5.2e-14 82.4 163 37.4
Ciclev10008515m.g Citrus clementina HOM05D001346 ORTHO05D001205 6.8e-14 82.0 157 45.9
Os02g0266800 Oryza sativa ssp. japonica HOM05D001346 ORTHO05D001205 6.8e-14 82.0 124 45.2
Sed0011676 Sechium edule HOM05D001346 ORTHO05D001205 1.5e-13 80.9 212 42.0
CDE07G1231 Ceratophyllum demersum HOM05D001346 ORTHO05D001205 2.6e-13 80.1 97 50.5
Lalb_Chr08g0243411 Lupinus albus HOM05D001346 ORTHO05D001205 2.6e-13 80.1 169 41.4
CDE04G1911 Ceratophyllum demersum HOM05D001346 ORTHO05D001205 5.8e-13 79.0 130 43.8
Thhalv10004701m.g Eutrema salsugineum HOM05D001346 ORTHO05D001205 9.9e-13 78.2 180 35.6
Medtr3g109310 Medicago truncatula HOM05D001346 ORTHO05D001205 9.9e-13 78.2 151 40.4
MBI13_g31552_MAGBIO Magnolia biondii HOM05D001346 ORTHO05D001205 1.3e-12 77.8 146 41.1
vmacro05098 Vaccinium macrocarpon HOM05D001346 ORTHO05D001205 2.9e-12 76.6 81 54.3
THA.LOC104814964 Tarenaya hassleriana HOM05D001346 ORTHO05D001205 7.8e-10 68.6 180 34.4
Hund19307 Selenicereus undatus HOM05D001346 ORTHO05D001205 1.0e-09 68.2 119 42.0
Duzib150G0636 Durio zibethinus HOM05D001346 ORTHO05D001205 2.3e-09 67.0 161 35.4
BraA06t26482Z Brassica rapa HOM05D001346 ORTHO05D001205 5.1e-09 65.9 220 30.0
Ah.11g044020 Amaranthus hybridus HOM05D001346 ORTHO05D001205 6.6e-09 65.5 190 30.5
THA.LOC104799003 Tarenaya hassleriana HOM05D001346 ORTHO05D001205 6.6e-09 65.5 180 37.8
THA.LOC104810652 Tarenaya hassleriana HOM05D001346 ORTHO05D001205 6.6e-09 65.5 180 37.8
A06p35570 Brassica napus HOM05D001346 ORTHO05D001205 8.6e-09 65.1 220 29.5
Eucgr.C03986 Eucalyptus grandis HOM05D001346 ORTHO05D001205 8.6e-09 65.1 189 33.9
Carub.0006s2265 Capsella rubella HOM05D001346 ORTHO05D001205 3.3e-08 63.2 180 33.3
PGR044G1653 Punica granatum HOM05D001346 ORTHO05D001205 4.3e-08 62.8 191 33.5
BolC2t12060H Brassica oleracea HOM05D001346 ORTHO05D001205 7.3e-08 62.0 180 33.3
Gohir.D07G001033 Gossypium hirsutum HOM05D001346 ORTHO05D001205 9.5e-08 61.6 98 42.9
Gorai.001G000600 Gossypium raimondii HOM05D001346 ORTHO05D001205 9.5e-08 61.6 98 42.9
BcaB07g29923 Brassica carinata HOM05D001346 ORTHO05D001205 1.2e-07 61.2 210 30.0
BcaC03g17944 Brassica carinata HOM05D001346 ORTHO05D001205 1.2e-07 61.2 114 41.2
A02p40090 Brassica napus HOM05D001346 ORTHO05D001205 2.8e-07 60.1 144 34.7
BraA02t08972Z Brassica rapa HOM05D001346 ORTHO05D001205 2.8e-07 60.1 144 34.7
Duzib168G1031 Durio zibethinus HOM05D001346 ORTHO05D001205 2.8e-07 60.1 130 46.2
C02p60050 Brassica napus HOM05D001346 ORTHO05D001205 3.6e-07 59.7 114 40.4
Sp2g22650 Schrenkiella parvula HOM05D001346 ORTHO05D001205 3.6e-07 59.7 180 33.9
CARHR188660 Cardamine hirsuta HOM05D001346 ORTHO05D001205 8.1e-07 58.5 113 38.1
Phvul.001G077200 Phaseolus vulgaris HOM05D001346 ORTHO05D001205 1.4e-06 57.8 133 36.1
Medtr1g080920 Medicago truncatula HOM05D001346 ORTHO05D001205 1.8e-06 57.4 39 71.8
PSO210G6449 Papaver somniferum HOM05D001346 ORTHO05D001205 1.8e-06 57.4 39 69.2
MBI04_g08414_MAGBIO Magnolia biondii HOM05D001346 ORTHO05D001205 2.4e-06 57.0 81 44.4
Glyma.20G224500 Glycine max HOM05D001346 ORTHO05D001205 3.1e-06 56.6 110 36.4
Ca_10046_v3 Cicer arietinum L. HOM05D001346 ORTHO05D001205 4.0e-06 56.2 39 69.2
TPR.G12949 Trifolium pratense HOM05D001346 ORTHO05D001205 4.0e-06 56.2 39 69.2
BolC7t44826H Brassica oleracea HOM05D001346 ORTHO05D001205 6.8e-06 55.5 220 28.6


User provided reference genes

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