Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g36372 Fragaria vesca HOM05D003482 ORTHO05D004194 8.2e-260 899.8 440 100.0
FAN27G0167 Fragaria x ananassa HOM05D003482 ORTHO05D004194 7.7e-258 893.3 440 99.3
FAN15G0261 Fragaria x ananassa HOM05D003482 ORTHO05D004194 5.9e-226 787.3 440 89.3
RcHm_v2.0_Chr6g0305511 Rosa chinensis HOM05D003482 ORTHO05D004194 4.9e-212 741.1 398 91.5
Prupe.1G455100 Prunus persica HOM05D003482 ORTHO05D004194 6.7e-177 624.4 491 65.4
FvH4_2g36370 Fragaria vesca HOM05D003482 ORTHO05D004194 4.5e-173 611.7 478 64.9
MD08G1123100 Malus domestica HOM05D003482 ORTHO05D004194 4.5e-173 611.7 506 61.9
TWI34G0517 Tripterygium wilfordii HOM05D003482 ORTHO05D004194 4.3e-168 595.1 439 66.7
Thecc.09G004000 Theobroma cacao HOM05D003482 ORTHO05D004194 9.6e-168 594.0 495 61.8
Manes.16G137200 Manihot esculenta HOM05D003482 ORTHO05D004194 2.4e-166 589.3 473 63.2
Actinidia14155 Actinidia chinensis HOM05D003482 ORTHO05D004194 4.5e-165 585.1 496 60.1
Duzib168G0916 Durio zibethinus HOM05D003482 ORTHO05D004194 7.6e-165 584.3 477 61.6
COL.COLO4_18622 Corchorus olitorius HOM05D003482 ORTHO05D004194 1.3e-164 583.6 447 66.4
COL.COLO4_18624 Corchorus olitorius HOM05D003482 ORTHO05D004194 1.3e-164 583.6 486 61.3
TAR506G0002 Trochodendron aralioides HOM05D003482 ORTHO05D004194 6.5e-164 581.3 506 59.1
Dinv11875 Davidia involucrata HOM05D003482 ORTHO05D004194 8.4e-164 580.9 505 59.8
Gohir.A05G066000 Gossypium hirsutum HOM05D003482 ORTHO05D004194 1.4e-163 580.1 488 59.4
Gohir.D05G068400 Gossypium hirsutum HOM05D003482 ORTHO05D004194 1.9e-163 579.7 488 59.2
TWI32G0788 Tripterygium wilfordii HOM05D003482 ORTHO05D004194 3.2e-163 578.9 510 58.0
Gorai.009G069300 Gossypium raimondii HOM05D003482 ORTHO05D004194 7.1e-163 577.8 488 59.0
CiPaw.07G208900 Carya illinoinensis HOM05D003482 ORTHO05D004194 1.2e-162 577.0 497 58.8
Potri.018G003400 Populus trichocarpa HOM05D003482 ORTHO05D004194 2.7e-162 575.9 499 58.9
Atru.chr7.2677 Acer truncatum HOM05D003482 ORTHO05D004194 1.8e-161 573.2 493 60.0
Cfa013321 Carpinus fangiana HOM05D003482 ORTHO05D004194 3.0e-161 572.4 498 60.2
Migut.A00459 Erythranthe guttata HOM05D003482 ORTHO05D004194 1.5e-160 570.1 456 61.0
CANSAT25G1343 Cannabis sativa HOM05D003482 ORTHO05D004194 9.7e-160 567.4 507 58.4
Nn8g40986 Nelumbo nucifera HOM05D003482 ORTHO05D004194 3.7e-159 565.5 507 56.6
Sopen08g022930 Solanum pennellii HOM05D003482 ORTHO05D004194 3.7e-159 565.5 478 58.8
Ciclev10007354m.g Citrus clementina HOM05D003482 ORTHO05D004194 4.8e-159 565.1 498 57.8
QL12p026010 Quercus lobata HOM05D003482 ORTHO05D004194 4.8e-159 565.1 501 57.9
Sc14g0002010 Simmondsia chinensis HOM05D003482 ORTHO05D004194 6.3e-159 564.7 486 59.3
Potri.006G276600 Populus trichocarpa HOM05D003482 ORTHO05D004194 8.2e-159 564.3 503 57.5
Sabra18G0008800 Salix brachista HOM05D003482 ORTHO05D004194 1.1e-158 563.9 497 58.1
SGA_v2.0_scaffold27G11648 Striga asiatica HOM05D003482 ORTHO05D004194 2.0e-157 559.7 474 59.5
Manes.03G001800 Manihot esculenta HOM05D003482 ORTHO05D004194 2.6e-157 559.3 495 57.6
Sabra18G0009100 Salix brachista HOM05D003482 ORTHO05D004194 5.9e-157 558.1 526 55.5
Sabra18G0002200 Salix brachista HOM05D003482 ORTHO05D004194 1.7e-156 556.6 526 55.1
PSO423G0073 Papaver somniferum HOM05D003482 ORTHO05D004194 2.9e-156 555.8 469 59.5
Peaxi162Scf00213g01025 Petunia axillaris HOM05D003482 ORTHO05D004194 5.0e-156 555.1 496 57.5
FAN20G1504 Fragaria x ananassa HOM05D003482 ORTHO05D004194 8.5e-156 554.3 485 59.4
PSO596G0002 Papaver somniferum HOM05D003482 ORTHO05D004194 8.5e-156 554.3 479 58.2
TAR626G0827 Trochodendron aralioides HOM05D003482 ORTHO05D004194 8.5e-156 554.3 496 56.5
Haze_21807 Corylus avellana HOM05D003482 ORTHO05D004194 1.1e-155 553.9 524 56.7
Cpa.g.sc328.6 Carica papaya HOM05D003482 ORTHO05D004194 1.4e-155 553.5 488 58.6
Lalb_Chr14g0362391 Lupinus albus HOM05D003482 ORTHO05D004194 1.9e-155 553.1 475 59.2
Psat6g006000 Pisum sativum HOM05D003482 ORTHO05D004194 7.2e-155 551.2 480 59.2
Sabra06G0214300 Salix brachista HOM05D003482 ORTHO05D004194 7.2e-155 551.2 550 54.0
Lj1g0006594 Lotus japonicus HOM05D003482 ORTHO05D004194 2.7e-154 549.3 484 58.3
Rhsim07G0170800 Rhododendron simsii HOM05D003482 ORTHO05D004194 6.1e-154 548.1 490 58.0
Phvul.001G077100 Phaseolus vulgaris HOM05D003482 ORTHO05D004194 1.8e-153 546.6 485 56.9
MSTRG.11822 Avicennia marina HOM05D003482 ORTHO05D004194 2.3e-153 546.2 489 58.1
Eucgr.C03989 Eucalyptus grandis HOM05D003482 ORTHO05D004194 5.1e-153 545.0 491 56.6
Ca_12826_v3 Cicer arietinum L. HOM05D003482 ORTHO05D004194 6.7e-153 544.7 479 57.6
VMungo0647G1298 Vigna mungo HOM05D003482 ORTHO05D004194 6.7e-153 544.7 488 57.0
Nitab4.5_0000970g0010 Nicotiana tabacum HOM05D003482 ORTHO05D004194 1.1e-152 543.9 482 57.3
BolC2t12059H Brassica oleracea HOM05D003482 ORTHO05D004194 1.5e-152 543.5 470 58.5
BcaC03g17943 Brassica carinata HOM05D003482 ORTHO05D004194 2.0e-152 543.1 470 58.3
Thhalv10003586m.g Eutrema salsugineum HOM05D003482 ORTHO05D004194 2.0e-152 543.1 479 57.6
BraA02t08971Z Brassica rapa HOM05D003482 ORTHO05D004194 2.5e-152 542.7 470 58.3
CARHR188650 Cardamine hirsuta HOM05D003482 ORTHO05D004194 3.3e-152 542.3 489 56.2
Lj7C753G1 Lonicera japonica HOM05D003482 ORTHO05D004194 3.3e-152 542.3 532 54.3
Aqoxy7G02727 Aquilegia oxysepala HOM05D003482 ORTHO05D004194 5.7e-152 541.6 493 57.8
C02p60040 Brassica napus HOM05D003482 ORTHO05D004194 5.7e-152 541.6 470 58.3
A02p40080 Brassica napus HOM05D003482 ORTHO05D004194 7.4e-152 541.2 471 58.0
Carub.0006s2266 Capsella rubella HOM05D003482 ORTHO05D004194 9.7e-152 540.8 485 56.5
AL6G36450 Arabidopsis lyrata HOM05D003482 ORTHO05D004194 1.7e-151 540.0 485 56.5
BcaB07g29924 Brassica carinata HOM05D003482 ORTHO05D004194 2.2e-151 539.7 471 58.2
CAN.G195.3 Capsicum annuum HOM05D003482 ORTHO05D004194 2.8e-151 539.3 481 57.4
Glyma.14G139800 Glycine max HOM05D003482 ORTHO05D004194 4.8e-151 538.5 486 56.4
CsaV3_3G047320 Cucumis sativus L. HOM05D003482 ORTHO05D004194 1.1e-150 537.3 500 57.6
HanXRQChr03g0081371 Helianthus annuus HOM05D003482 ORTHO05D004194 1.1e-150 537.3 435 61.8
PGR044G0156 Punica granatum HOM05D003482 ORTHO05D004194 1.1e-150 537.3 473 59.0
DCAR_004550 Daucus carota HOM05D003482 ORTHO05D004194 1.8e-150 536.6 498 55.8
Glyma.17G188300 Glycine max HOM05D003482 ORTHO05D004194 1.8e-150 536.6 487 56.7
ECA240G1915 Erigeron canadensis HOM05D003482 ORTHO05D004194 2.4e-150 536.2 475 57.9
AT5G24810 Arabidopsis thaliana HOM05D003482 ORTHO05D004194 9.1e-150 534.3 494 54.7
Hund03269 Selenicereus undatus HOM05D003482 ORTHO05D004194 9.1e-150 534.3 493 56.2
Hund19390 Selenicereus undatus HOM05D003482 ORTHO05D004194 1.2e-149 533.9 510 56.1
BolC7t44825H Brassica oleracea HOM05D003482 ORTHO05D004194 2.0e-149 533.1 479 55.9
HanXRQChr13g0411821 Helianthus annuus HOM05D003482 ORTHO05D004194 2.6e-149 532.7 476 57.4
C07p42960 Brassica napus HOM05D003482 ORTHO05D004194 3.4e-149 532.3 479 55.9
MELO3C003597.2 Cucumis melo HOM05D003482 ORTHO05D004194 5.9e-149 531.6 502 56.0
Sed0005804 Sechium edule HOM05D003482 ORTHO05D004194 1.3e-148 530.4 503 56.1
HanXRQChr03g0082881 Helianthus annuus HOM05D003482 ORTHO05D004194 1.7e-148 530.0 478 56.5
BraA06t26483Z Brassica rapa HOM05D003482 ORTHO05D004194 2.9e-148 529.3 479 55.5
MBI13_g31548_MAGBIO Magnolia biondii HOM05D003482 ORTHO05D004194 6.5e-148 528.1 476 56.7
Sp2g22640 Schrenkiella parvula HOM05D003482 ORTHO05D004194 6.5e-148 528.1 486 56.0
A06p35580 Brassica napus HOM05D003482 ORTHO05D004194 8.5e-148 527.7 479 55.5
HPP92_015798 Vanilla planifolia HOM05D003482 ORTHO05D004194 4.2e-147 525.4 461 56.0
Aa31LG11G4020 Aethionema arabicum HOM05D003482 ORTHO05D004194 5.5e-147 525.0 483 55.9
HPP92_015810 Vanilla planifolia HOM05D003482 ORTHO05D004194 7.2e-147 524.6 461 56.0
Lsat_1_v5_gn_5_60380 Lactuca sativa HOM05D003482 ORTHO05D004194 1.2e-146 523.9 468 56.6
THA.LOC104814963 Tarenaya hassleriana HOM05D003482 ORTHO05D004194 1.2e-146 523.9 484 56.0
Zm00001eb272880 Zea mays HOM05D003482 ORTHO05D004194 6.1e-146 521.5 490 54.9
Lsat_1_v5_gn_5_58881 Lactuca sativa HOM05D003482 ORTHO05D004194 1.5e-144 516.9 451 57.6
BcaNung01256 Brassica carinata HOM05D003482 ORTHO05D004194 4.8e-143 511.9 471 55.4
PGSC0003DMG400029592 Solanum tuberosum HOM05D003482 ORTHO05D004194 8.2e-143 511.1 444 57.9
EL10Ac2g03705 Beta vulgaris HOM05D003482 ORTHO05D004194 5.3e-142 508.4 495 54.3
Lsat_1_v5_gn_5_58921 Lactuca sativa HOM05D003482 ORTHO05D004194 2.0e-141 506.5 436 57.1
Lsat_1_v5_gn_5_59000 Lactuca sativa HOM05D003482 ORTHO05D004194 1.0e-140 504.2 450 56.7
Lsat_1_v5_gn_5_58361 Lactuca sativa HOM05D003482 ORTHO05D004194 6.5e-140 501.5 462 55.4
ECA240G2590 Erigeron canadensis HOM05D003482 ORTHO05D004194 3.9e-137 492.3 429 57.8
arahy.Tifrunner.gnm1.ann1.N6E37M Arachis hypogaea HOM05D003482 ORTHO05D004194 5.7e-136 488.4 482 53.5
ATR0626G323 Amborella trichopoda HOM05D003482 ORTHO05D004194 2.2e-135 486.5 467 53.1
ECA240G4147 Erigeron canadensis HOM05D003482 ORTHO05D004194 2.8e-135 486.1 447 55.5
Lsat_1_v5_gn_5_60400 Lactuca sativa HOM05D003482 ORTHO05D004194 5.3e-134 481.9 434 56.0
ECA240G0756 Erigeron canadensis HOM05D003482 ORTHO05D004194 9.1e-134 481.1 444 55.2
Ah.10g033820 Amaranthus hybridus HOM05D002718 ORTHO05D003269 2.0e-133 479.9 572 47.7
CDE05G0655 Ceratophyllum demersum HOM05D003482 ORTHO05D004194 2.6e-133 479.6 478 52.3
ECA233G2479 Erigeron canadensis HOM05D003482 ORTHO05D004194 2.6e-133 479.6 406 59.6
arahy.Tifrunner.gnm1.ann1.21Z9DD Arachis hypogaea HOM05D003482 ORTHO05D004194 3.8e-132 475.7 482 52.3
Lsat_1_v5_gn_5_60480 Lactuca sativa HOM05D003482 ORTHO05D004194 2.7e-130 469.5 450 54.7
Lsat_1_v5_gn_5_60420 Lactuca sativa HOM05D003482 ORTHO05D004194 1.4e-129 467.2 464 53.0
HanXRQChr13g0412011 Helianthus annuus HOM05D003482 ORTHO05D004194 2.0e-128 463.4 425 55.8
ECA240G0557 Erigeron canadensis HOM05D003482 ORTHO05D004194 1.3e-127 460.7 426 55.4
HanXRQChr13g0411981 Helianthus annuus HOM05D003482 ORTHO05D004194 2.8e-127 459.5 432 55.6
MD15G1102100 Malus domestica HOM05D003482 ORTHO05D004194 3.5e-125 452.6 417 57.8
Lalb_Chr22g0361011 Lupinus albus HOM05D003482 ORTHO05D004194 8.5e-124 448.0 314 68.5
Pp3c16_18060 Physcomitrium patens HOM05D003482 ORTHO05D004194 2.5e-123 446.4 484 49.0
Medtr1g008980 Medicago truncatula HOM05D003482 ORTHO05D004194 6.8e-121 438.3 327 65.1
Pp3c5_19100 Physcomitrium patens HOM05D003482 ORTHO05D004194 4.8e-119 432.2 482 48.5
SalBow4G3081 Salvia bowleyana HOM05D003482 ORTHO05D004194 4.1e-118 429.1 495 48.9
unitig_92.g28144 Utricularia gibba HOM05D003482 ORTHO05D004194 2.7e-117 426.4 424 53.8
Lsat_1_v5_gn_5_60580 Lactuca sativa HOM05D003482 ORTHO05D004194 2.5e-115 419.9 552 44.4
ECA240G3793 Erigeron canadensis HOM05D003482 ORTHO05D004194 3.3e-115 419.5 428 50.9
ECA240G2186 Erigeron canadensis HOM05D003482 ORTHO05D004194 4.2e-115 419.1 445 51.9
Mapoly0007s0194 Marchantia polymorpha HOM05D003482 ORTHO05D004194 8.0e-114 414.8 490 47.1
AagrBONN_evm.TU.Sc2ySwM_228.3219 Anthoceros agrestis HOM05D003482 ORTHO05D004194 1.4e-113 414.1 452 48.0
Lsat_1_v5_gn_6_15541 Lactuca sativa HOM05D003482 ORTHO05D004194 2.0e-112 410.2 465 49.5
SMO353G0164 Selaginella moellendorffii HOM05D003482 ORTHO05D004194 4.4e-112 409.1 450 50.4
HanXRQChr03g0082871 Helianthus annuus HOM05D003482 ORTHO05D004194 1.1e-110 404.4 360 58.3
AagrBONN_evm.TU.Sc2ySwM_228.3217 Anthoceros agrestis HOM05D003482 ORTHO05D004194 4.1e-110 402.5 427 48.9
MD15G1100800 Malus domestica HOM05D003482 ORTHO05D004194 5.6e-107 392.1 505 46.3
SMO353G0165 Selaginella moellendorffii HOM05D003482 ORTHO05D004194 1.0e-105 387.9 458 47.4
CSS0039275 Camellia sinensis var. sinensis HOM05D003482 ORTHO05D004194 4.7e-98 362.5 243 70.4
TPR.G12040 Trifolium pratense HOM05D003482 ORTHO05D004194 1.1e-97 361.3 397 51.1
HanXRQChr13g0411841 Helianthus annuus HOM05D003482 ORTHO05D004194 3.1e-97 359.8 352 53.4
HanXRQChr13g0407961 Helianthus annuus HOM05D003482 ORTHO05D004194 2.9e-95 353.2 351 53.6
HanXRQChr13g0412001 Helianthus annuus HOM05D003482 ORTHO05D004194 1.2e-88 331.3 332 54.2
Oeu059294.1 Olea europaea HOM05D003482 ORTHO05D004194 4.4e-88 329.3 210 71.0
vmacro05100 Vaccinium macrocarpon HOM05D003482 ORTHO05D004194 1.1e-86 324.7 216 69.0
GSVIVG01035556001 Vitis vinifera HOM05D003482 ORTHO05D004194 1.1e-86 324.7 204 72.5
Nitab4.5_0000919g0060 Nicotiana tabacum HOM05D003482 ORTHO05D004194 3.9e-84 316.2 244 62.3
vmacro05099 Vaccinium macrocarpon HOM05D003482 ORTHO05D004194 9.9e-72 275.0 289 52.2
Potri.018G003600 Populus trichocarpa HOM05D003482 ORTHO05D004194 4.2e-70 269.6 177 68.4
CBR_g4189 Chara braunii HOM05D003482 ORTHO05D004194 7.1e-70 268.9 215 53.0
Potri.018G004500 Populus trichocarpa HOM05D003482 ORTHO05D004194 6.9e-65 252.3 191 66.0
SEGI_21174 Sequoiadendron giganteum HOM05D003482 ORTHO05D004194 7.9e-61 238.8 299 46.8
Sabra18G0012500 Salix brachista HOM05D000009 ORTHO05D000008 8.7e-60 235.3 156 70.5
Oeu059293.1 Olea europaea HOM05D003482 ORTHO05D004194 4.3e-59 233.0 253 51.0
Cc00_g11230 Coffea canephora HOM05D003482 ORTHO05D004194 1.8e-57 227.6 279 46.2
Solyc08g074280.4 Solanum lycopersicum HOM05D003482 ORTHO05D004194 1.0e-52 211.8 136 71.3
Os06g0701300 Oryza sativa ssp. japonica HOM05D003482 ORTHO05D004194 8.4e-47 192.2 123 73.2
SEGI_21512 Sequoiadendron giganteum HOM05D003482 ORTHO05D004194 3.2e-46 190.3 142 57.7
Sabra18G0005800 Salix brachista HOM05D003482 ORTHO05D004194 9.3e-46 188.7 152 64.5
Sabra18G0007800 Salix brachista HOM05D003482 ORTHO05D004194 9.3e-46 188.7 152 64.5
ECA240G1043 Erigeron canadensis HOM05D003482 ORTHO05D004194 2.7e-45 187.2 235 45.1
Lsat_1_v5_gn_7_104720 Lactuca sativa HOM05D003482 ORTHO05D004194 8.2e-34 149.1 107 62.6
PSO832G2792 Papaver somniferum HOM05D003482 ORTHO05D004194 5.3e-33 146.4 222 41.4
Nitab4.5_0000502g0210 Nicotiana tabacum HOM05D003482 ORTHO05D019565 1.5e-32 144.8 119 58.0
Lalb_Chr22g0361021 Lupinus albus HOM05D003482 ORTHO05D004194 3.8e-31 140.2 112 59.8
HanXRQChr13g0411991 Helianthus annuus HOM05D003482 ORTHO05D004194 3.0e-28 130.6 87 67.8
ECA240G1890 Erigeron canadensis HOM05D003482 ORTHO05D004194 1.5e-27 128.3 92 65.2
Lsat_1_v5_gn_5_60340 Lactuca sativa HOM05D003482 ORTHO05D004194 4.8e-18 96.7 73 57.5
PSO058G0001 Papaver somniferum HOM05D003482 ORTHO05D004194 1.6e-16 91.7 75 58.7
Sabra18G0012600 Salix brachista HOM05D003482 ORTHO05D010018 5.0e-15 86.7 54 74.1
CDE05G2143 Ceratophyllum demersum HOM05D003482 ORTHO05D004194 1.1e-14 85.5 125 45.6
Lsat_1_v5_gn_5_60320 Lactuca sativa HOM05D003482 ORTHO05D004194 1.5e-14 85.1 89 59.6
Mapoly0048s0069 Marchantia polymorpha HOM05D022213 ORTHO05D002258 1.2e-08 65.5 149 28.9
Cfa024898 Carpinus fangiana HOM05D003482 ORTHO05D043602 5.9e-08 63.2 215 24.2
Sabra18G0010300 Salix brachista HOM05D003482 ORTHO05D003343 7.7e-08 62.8 41 68.3
CBR_g40631 Chara braunii HOM05D002830 ORTHO05D002258 1.3e-07 62.0 147 27.9
ClCG11G013930 Citrullus lanatus HOM05D003482 ORTHO05D004194 3.2e-06 57.4 37 64.9
AagrBONN_evm.TU.Sc2ySwM_117.3511 Anthoceros agrestis HOM05D022213 ORTHO05D002258 7.2e-06 56.2 152 28.3


User provided reference genes

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