Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g35900 Fragaria vesca HOM05D004081 ORTHO05D004935 2.6e-247 858.2 425 100.0
FAN27G0952 Fragaria x ananassa HOM05D004081 ORTHO05D004935 2.2e-238 828.6 425 96.9
FAN20G0986 Fragaria x ananassa HOM05D004081 ORTHO05D004935 1.2e-231 806.2 421 95.2
RcHm_v2.0_Chr6g0305921 Rosa chinensis HOM05D004081 ORTHO05D004935 7.8e-223 776.9 427 90.9
MD08G1116700 Malus domestica HOM05D004081 ORTHO05D004935 8.7e-182 640.6 427 77.5
Prupe.1G451100 Prunus persica HOM05D004081 ORTHO05D004935 8.4e-177 624.0 409 77.0
TAR383G0460 Trochodendron aralioides HOM05D004081 ORTHO05D004935 1.2e-162 577.0 398 71.6
QL12p029513 Quercus lobata HOM05D004081 ORTHO05D004935 5.8e-162 574.7 419 69.0
Actinidia31231 Actinidia chinensis HOM05D004081 ORTHO05D004935 1.3e-161 573.5 399 72.4
GSVIVG01035653001 Vitis vinifera HOM05D004081 ORTHO05D004935 2.2e-161 572.8 356 78.1
Potri.006G240600 Populus trichocarpa HOM05D004081 ORTHO05D004935 4.9e-161 571.6 429 68.3
Thecc.09G041800 Theobroma cacao HOM05D004081 ORTHO05D004935 8.4e-161 570.9 418 69.9
Nn3g18089 Nelumbo nucifera HOM05D004081 ORTHO05D004935 5.5e-160 568.2 367 75.5
vmacro11071 Vaccinium macrocarpon HOM05D004081 ORTHO05D004935 2.1e-159 566.2 367 74.7
Manes.03G062100 Manihot esculenta HOM05D004081 ORTHO05D004935 3.5e-159 565.5 400 71.5
TWI34G1344 Tripterygium wilfordii HOM05D004081 ORTHO05D004935 3.9e-158 562.0 406 70.9
Sc23g0006000 Simmondsia chinensis HOM05D004081 ORTHO05D004935 5.1e-158 561.6 358 73.5
Peaxi162Scf00090g00194 Petunia axillaris HOM05D004081 ORTHO05D004935 3.3e-157 558.9 356 75.8
Sabra06G0188200 Salix brachista HOM05D004081 ORTHO05D004935 4.3e-157 558.5 365 74.5
Gohir.D06G093900 Gossypium hirsutum HOM05D004081 ORTHO05D004935 1.3e-156 557.0 400 69.2
Gorai.010G108400 Gossypium raimondii HOM05D004081 ORTHO05D004935 1.3e-156 557.0 412 67.5
COL.COLO4_18679 Corchorus olitorius HOM05D004081 ORTHO05D004935 6.3e-156 554.7 350 76.3
Nitab4.5_0001499g0090 Nicotiana tabacum HOM05D004081 ORTHO05D004935 1.1e-155 553.9 371 73.6
Migut.A00225 Erythranthe guttata HOM05D004081 ORTHO05D004935 1.8e-155 553.1 411 66.7
Manes.16G071800 Manihot esculenta HOM05D004081 ORTHO05D004935 1.8e-155 553.1 411 67.6
CSS0039336 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 3.1e-155 552.4 354 73.7
PGR004G0014 Punica granatum HOM05D004081 ORTHO05D004935 4.1e-155 552.0 439 66.7
Sc06g0000750 Simmondsia chinensis HOM05D004081 ORTHO05D004935 4.1e-155 552.0 409 67.5
Cc08_g09170 Coffea canephora HOM05D004081 ORTHO05D004935 5.3e-155 551.6 350 76.0
Cfa013350 Carpinus fangiana HOM05D004081 ORTHO05D004935 6.9e-155 551.2 414 69.3
Oeu011271.1 Olea europaea HOM05D004081 ORTHO05D004935 9.0e-155 550.8 384 70.1
Gorai.010G108500 Gossypium raimondii HOM05D004081 ORTHO05D004935 2.0e-154 549.7 352 75.0
FAN15G1869 Fragaria x ananassa HOM05D004081 ORTHO05D004935 2.6e-154 549.3 296 92.9
Gohir.D06G094000 Gossypium hirsutum HOM05D004081 ORTHO05D004935 2.6e-154 549.3 352 74.7
Duzib150G1044 Durio zibethinus HOM05D004081 ORTHO05D004935 5.9e-154 548.1 417 66.7
Eucgr.E03517 Eucalyptus grandis HOM05D004081 ORTHO05D004935 2.2e-153 546.2 424 65.3
Nitab4.5_0002411g0020 Nicotiana tabacum HOM05D004081 ORTHO05D004935 2.2e-153 546.2 358 74.6
MSTRG.11708 Avicennia marina HOM05D004081 ORTHO05D004935 8.5e-153 544.3 407 67.3
Haze_21871 Corylus avellana HOM05D004081 ORTHO05D004935 1.4e-152 543.5 357 75.1
TPR.G1357 Trifolium pratense HOM05D004081 ORTHO05D004935 1.4e-152 543.5 401 68.6
Duzib168G0078 Durio zibethinus HOM05D004081 ORTHO05D004935 3.2e-152 542.3 351 74.6
PGSC0003DMG400005495 Solanum tuberosum HOM05D004081 ORTHO05D004935 3.2e-152 542.3 350 73.7
Ca_15610_v3 Cicer arietinum L. HOM05D004081 ORTHO05D004935 5.5e-152 541.6 396 68.2
Sopen08g022280 Solanum pennellii HOM05D004081 ORTHO05D004935 1.6e-151 540.0 350 73.1
ECA236G4667 Erigeron canadensis HOM05D004081 ORTHO05D004935 4.6e-151 538.5 348 75.0
MELO3C003456.2 Cucumis melo HOM05D004081 ORTHO05D004935 7.9e-151 537.7 407 67.3
Ah.10g035110 Amaranthus hybridus HOM05D004081 ORTHO05D004935 1.4e-150 537.0 360 73.1
Aqoxy7G01585 Aquilegia oxysepala HOM05D004081 ORTHO05D004935 1.4e-150 537.0 367 72.5
Solyc05g041530.3 Solanum lycopersicum HOM05D004081 ORTHO05D004935 2.3e-150 536.2 353 72.5
Solyc08g068400.4 Solanum lycopersicum HOM05D004081 ORTHO05D004935 2.3e-150 536.2 350 72.6
EL10Ac2g04053 Beta vulgaris HOM05D004081 ORTHO05D004935 3.0e-150 535.8 427 64.9
Sed0008402 Sechium edule HOM05D004081 ORTHO05D004935 3.9e-150 535.4 382 68.3
Sopen05g025590 Solanum pennellii HOM05D004081 ORTHO05D004935 5.1e-150 535.0 353 72.8
Glyma.04G081400 Glycine max HOM05D004081 ORTHO05D004935 2.5e-149 532.7 362 72.1
HanXRQChr16g0510231 Helianthus annuus HOM05D004081 ORTHO05D004935 3.3e-149 532.3 402 66.4
Thecc.09G041700 Theobroma cacao HOM05D004081 ORTHO05D004935 3.3e-149 532.3 353 73.4
CsaV3_3G048650 Cucumis sativus L. HOM05D004081 ORTHO05D004935 4.3e-149 531.9 366 70.8
CSS0025305 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 7.4e-149 531.2 355 73.0
AUR62009311 Chenopodium quinoa HOM05D004081 ORTHO05D004935 1.3e-148 530.4 360 72.5
AUR62029665 Chenopodium quinoa HOM05D004081 ORTHO05D004935 4.8e-148 528.5 360 71.7
arahy.Tifrunner.gnm1.ann1.QHLN3W Arachis hypogaea HOM05D004081 ORTHO05D004935 1.1e-147 527.3 366 69.4
Glyma.06G083100 Glycine max HOM05D004081 ORTHO05D004935 1.4e-147 526.9 424 65.1
Duzib168G2093 Durio zibethinus HOM05D004081 ORTHO05D004935 2.4e-147 526.2 356 72.2
ClCG11G015230 Citrullus lanatus HOM05D004081 ORTHO05D004935 3.4e-146 522.3 405 64.9
BcaB07g29982 Brassica carinata HOM05D004081 ORTHO05D004935 4.5e-146 521.9 361 69.0
Gohir.A06G094300 Gossypium hirsutum HOM05D004081 ORTHO05D004935 5.9e-146 521.5 412 65.3
SGA_v2.0_scaffold243G44290 Striga asiatica HOM05D004081 ORTHO05D004935 2.2e-145 519.6 327 73.7
PSO566G0156 Papaver somniferum HOM05D004081 ORTHO05D004935 2.9e-145 519.2 352 73.0
BolC2t11999H Brassica oleracea HOM05D004081 ORTHO05D004935 5.0e-145 518.5 357 69.5
BcaC03g17893 Brassica carinata HOM05D004081 ORTHO05D004935 6.5e-145 518.1 357 69.5
PGSC0003DMG400020762 Solanum tuberosum HOM05D004081 ORTHO05D004935 1.4e-144 516.9 378 67.2
AUR62041725 Chenopodium quinoa HOM05D004081 ORTHO05D004935 2.5e-144 516.2 334 74.3
arahy.Tifrunner.gnm1.ann1.Y1FCW9 Arachis hypogaea HOM05D004081 ORTHO05D004935 3.2e-144 515.8 425 61.9
Lj1g0015510 Lotus japonicus HOM05D004081 ORTHO05D004935 7.2e-144 514.6 424 63.0
Lsat_1_v5_gn_8_105500 Lactuca sativa HOM05D004081 ORTHO05D004935 2.1e-143 513.1 381 68.2
SalBow4G2011 Salvia bowleyana HOM05D004081 ORTHO05D004935 2.1e-143 513.1 364 68.4
VMungo1309G1316 Vigna mungo HOM05D004081 ORTHO05D004935 2.7e-143 512.7 424 63.0
PSO782G5115 Papaver somniferum HOM05D004081 ORTHO05D004935 3.6e-143 512.3 356 71.1
Thhalv10004493m.g Eutrema salsugineum HOM05D004081 ORTHO05D004935 4.7e-143 511.9 350 70.0
Phvul.009G106100 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 4.7e-143 511.9 420 63.6
CARHR187640 Cardamine hirsuta HOM05D004081 ORTHO05D004935 6.1e-143 511.5 349 69.3
BcaC04g23588 Brassica carinata HOM05D004081 ORTHO05D004935 1.4e-142 510.4 358 68.2
Hund03409 Selenicereus undatus HOM05D004081 ORTHO05D004935 1.8e-142 510.0 480 57.3
Glyma.06G083200 Glycine max HOM05D004081 ORTHO05D004935 2.3e-142 509.6 354 69.8
CiPaw.07G206000 Carya illinoinensis HOM05D004081 ORTHO05D004935 3.0e-142 509.2 308 79.2
BolC9t53593H Brassica oleracea HOM05D004081 ORTHO05D004935 8.8e-142 507.7 359 68.2
Psat5g023440 Pisum sativum HOM05D004081 ORTHO05D004935 1.1e-141 507.3 406 64.3
Os06g0163200 Oryza sativa ssp. japonica HOM05D004081 ORTHO05D004935 5.7e-141 505.0 356 69.1
Aa31LG11G4780 Aethionema arabicum HOM05D004081 ORTHO05D004935 9.7e-141 504.2 357 68.6
BcaB04g19768 Brassica carinata HOM05D004081 ORTHO05D004935 1.3e-140 503.8 358 67.3
CSS0003690 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.7e-140 503.4 304 77.3
Rhsim02G0180500 Rhododendron simsii HOM05D004081 ORTHO05D004935 2.8e-140 502.7 326 73.6
AL6G37640 Arabidopsis lyrata HOM05D002708 ORTHO05D003516 5.3e-139 498.4 362 66.6
unitig_748.g7994 Utricularia gibba HOM05D004081 ORTHO05D004935 5.9e-138 495.0 346 69.1
CAN.G21.43 Capsicum annuum HOM05D004081 ORTHO05D004935 1.3e-137 493.8 304 75.7
Carub.0006s2355 Capsella rubella HOM05D004081 ORTHO05D004935 5.0e-137 491.9 351 65.8
Sp2g21850 Schrenkiella parvula HOM05D004081 ORTHO05D004935 8.5e-137 491.1 353 66.0
Hma1.2p1_2102F.1_g314030 Hydrangea macrophylla HOM05D004081 ORTHO05D004935 1.9e-136 490.0 281 82.9
Lalb_Chr08g0243191 Lupinus albus HOM05D004081 ORTHO05D004935 9.4e-136 487.6 416 60.6
AT5G25770 Arabidopsis thaliana HOM05D004081 ORTHO05D004935 1.6e-135 486.9 350 65.7
THA.LOC104815055 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 3.6e-135 485.7 350 65.7
MBI01_g30745_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 2.3e-134 483.0 310 74.8
Aa31LG11G4770 Aethionema arabicum HOM05D004081 ORTHO05D004935 1.5e-133 480.3 358 65.9
BolC2t12002H Brassica oleracea HOM05D004081 ORTHO05D004935 3.3e-133 479.2 332 68.4
CSS0038651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 2.2e-132 476.5 304 74.0
Glyma.06G083000 Glycine max HOM05D004081 ORTHO05D004935 2.8e-132 476.1 323 70.9
Psat5g023320 Pisum sativum HOM05D004081 ORTHO05D004935 1.1e-131 474.2 304 73.7
Lj7A705T29 Lonicera japonica HOM05D004081 ORTHO05D004935 4.1e-131 472.2 317 72.9
Lsat_1_v5_gn_8_134220 Lactuca sativa HOM05D004081 ORTHO05D004935 5.3e-131 471.9 324 70.7
Lsat_1_v5_gn_8_104541 Lactuca sativa HOM05D004081 ORTHO05D004935 4.5e-130 468.8 324 70.4
CSS0042840 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 8.8e-126 454.5 336 67.6
Ciclev10009208m.g Citrus clementina HOM05D004081 ORTHO05D004935 2.0e-125 453.4 262 81.3
THA.LOC104799704 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 5.7e-125 451.8 356 63.2
Rhsim02G0180200 Rhododendron simsii HOM05D001113 ORTHO05D000968 1.9e-120 436.8 330 64.2
Lsat_1_v5_gn_8_104800 Lactuca sativa HOM05D004081 ORTHO05D004935 4.2e-120 435.6 324 66.7
BcaC04g23590 Brassica carinata HOM05D004081 ORTHO05D004935 4.4e-117 425.6 371 58.8
BcaC03g17895 Brassica carinata HOM05D004081 ORTHO05D004935 7.7e-114 414.8 479 47.0
A09p06100 Brassica napus HOM05D004081 ORTHO05D004935 9.5e-112 407.9 251 73.7
CAN.G21.42 Capsicum annuum HOM05D004081 ORTHO05D004935 1.0e-110 404.4 246 75.6
Phvul.009G105800 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 3.4e-109 399.4 379 52.2
Cpa.g.sc7.252 Carica papaya HOM05D004081 ORTHO05D004935 5.7e-109 398.7 275 69.8
CANSAT25G3157 Cannabis sativa HOM05D004081 ORTHO05D004935 2.0e-106 390.2 256 71.5
Duzib168G0602 Durio zibethinus HOM05D004081 ORTHO05D004935 5.6e-104 382.1 325 61.2
Gohir.A06G094400 Gossypium hirsutum HOM05D004081 ORTHO05D004935 5.6e-104 382.1 381 53.3
DCAR_004492 Daucus carota HOM05D004081 ORTHO05D004935 3.6e-103 379.4 241 74.7
Actinidia13318 Actinidia chinensis HOM05D004081 ORTHO05D004935 4.7e-103 379.0 222 82.0
VMungo0768G0001 Vigna mungo HOM05D004081 ORTHO05D004935 1.8e-102 377.1 363 51.0
Phvul.009G107301 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 4.9e-100 369.0 405 49.1
BolC2t12001H Brassica oleracea HOM05D004081 ORTHO05D004935 3.2e-99 366.3 287 64.5
SHI18658 Sapria himalayana HOM05D004081 ORTHO05D004935 2.5e-96 356.7 353 52.1
HPP92_021511 Vanilla planifolia HOM05D004081 ORTHO05D004935 1.1e-94 351.3 332 57.8
Lsat_1_v5_gn_8_104461 Lactuca sativa HOM05D004081 ORTHO05D004935 2.3e-94 350.1 380 52.6
Dinv30265 Davidia involucrata HOM05D004081 ORTHO05D004935 1.2e-93 347.8 276 67.4
AagrBONN_evm.TU.Sc2ySwM_228.1948 Anthoceros agrestis HOM05D004081 ORTHO05D004935 1.7e-92 344.0 363 49.6
CAN.G21.41 Capsicum annuum HOM05D004081 ORTHO05D004935 2.9e-92 343.2 210 73.8
Mapoly0161s0002 Marchantia polymorpha HOM05D004081 ORTHO05D004935 7.0e-91 338.6 298 55.4
Zm00001eb271420 Zea mays HOM05D004081 ORTHO05D004935 1.9e-88 330.5 251 64.9
CAN.G21.44 Capsicum annuum HOM05D004081 ORTHO05D004935 2.1e-82 310.5 288 56.6
ATR0121G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 4.6e-82 309.3 303 55.1
Glyma.04G081600 Glycine max HOM05D004081 ORTHO05D004935 5.6e-80 302.4 192 70.3
CSS0013583 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 4.7e-79 299.3 195 75.4
ATR0315G111 Amborella trichopoda HOM05D004081 ORTHO05D004935 6.2e-79 298.9 219 68.0
SMO089G0019 Selaginella moellendorffii HOM05D004081 ORTHO05D004935 1.7e-76 290.8 281 50.2
Eucgr.L00922 Eucalyptus grandis HOM05D004081 ORTHO05D004935 4.9e-76 289.3 261 57.1
CSS0028651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 3.3e-72 276.6 195 71.3
Lsat_1_v5_gn_8_104201 Lactuca sativa HOM05D004081 ORTHO05D004935 9.6e-72 275.0 331 49.5
Atru.chr7.2143 Acer truncatum HOM05D004081 ORTHO05D004935 4.2e-67 259.6 134 91.0
THA.LOC104809696 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 1.3e-65 254.6 195 64.1
SEGI_32132 Sequoiadendron giganteum HOM05D004081 ORTHO05D004935 7.1e-51 205.7 170 61.8
Hund03408 Selenicereus undatus HOM05D004081 ORTHO05D004935 1.8e-49 201.1 126 74.6
Medtr3g110115 Medicago truncatula HOM05D004081 ORTHO05D004935 2.1e-47 194.1 330 40.0
MCO09G062 Micromonas commoda HOM05D004081 ORTHO05D004935 8.2e-47 192.2 325 35.1
Nitab4.5_0000513g0070 Nicotiana tabacum HOM05D004081 ORTHO05D004935 4.5e-45 186.4 335 38.5
Lsat_1_v5_gn_0_34401 Lactuca sativa HOM05D004081 ORTHO05D004935 1.3e-44 184.9 234 47.0
Atru.chr7.2142 Acer truncatum HOM05D004081 ORTHO05D004935 3.0e-41 173.7 117 75.2
Cre16.g676500 Chlamydomonas reinhardtii HOM05D004081 ORTHO05D004935 8.7e-41 172.2 223 40.4
PRCOL_00003400 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 7.4e-40 169.1 299 32.1
AL6G37600 Arabidopsis lyrata HOM05D004081 ORTHO05D004935 7.7e-37 159.1 156 50.6
BcaB05g25303 Brassica carinata HOM05D004081 ORTHO05D004935 9.4e-35 152.1 89 75.3
PRCOL_00002146 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 1.0e-28 132.1 207 37.2
Oeu014640.1 Olea europaea HOM05D004081 ORTHO05D025646 1.9e-19 101.3 132 47.0
Ciclev10010051m.g Citrus clementina HOM05D004081 ORTHO05D004935 2.6e-16 90.9 74 56.8
HPP92_021483 Vanilla planifolia HOM05D004081 ORTHO05D004935 1.4e-14 85.1 68 63.2
ATR0241G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 5.3e-14 83.2 67 56.7
Cpa.g.sc7.250 Carica papaya HOM05D002779 ORTHO05D003074 5.3e-14 83.2 49 77.6
Zm00001eb357480 Zea mays HOM05D002669 ORTHO05D004935 1.2e-13 82.0 70 54.3
Zm00001eb288810 Zea mays HOM05D002669 ORTHO05D004935 2.6e-13 80.9 70 54.3
ATR0121G013 Amborella trichopoda HOM05D004081 ORTHO05D004935 8.0e-10 69.3 72 55.6
MD15G1096200 Malus domestica HOM05D004081 ORTHO05D025646 2.0e-08 64.7 46 67.4
PGSC0003DMG400019844 Solanum tuberosum HOM05D004081 ORTHO05D004935 3.7e-07 60.5 41 73.2
MBI14_g24972_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 3.1e-06 57.4 44 63.6


User provided reference genes

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