Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g35880 Fragaria vesca HOM05D004021 ORTHO05D003767 0.0e+00 2565.8 1281 100.0
FAN27G1714 Fragaria x ananassa HOM05D004021 ORTHO05D003767 0.0e+00 2543.5 1281 99.3
FAN20G2231 Fragaria x ananassa HOM05D004021 ORTHO05D003767 0.0e+00 2478.0 1282 96.9
FAN15G2992 Fragaria x ananassa HOM05D004021 ORTHO05D003767 0.0e+00 2476.4 1282 96.8
RcHm_v2.0_Chr6g0305941 Rosa chinensis HOM05D004021 ORTHO05D003767 0.0e+00 2179.1 1283 86.1
Prupe.1G450900 Prunus persica HOM05D004021 ORTHO05D003767 0.0e+00 1345.5 1300 58.5
MD08G1116300 Malus domestica HOM05D004021 ORTHO05D003767 0.0e+00 1087.4 1301 51.5
MD15G1096000 Malus domestica HOM05D004021 ORTHO05D003767 4.8e-276 955.3 1071 54.2
FAN02G4319 Fragaria x ananassa HOM05D004021 ORTHO05D003767 7.0e-251 871.7 439 99.1
FAN09G3084 Fragaria x ananassa HOM05D004021 ORTHO05D003767 9.1e-251 871.3 437 99.5
FAN20G1338 Fragaria x ananassa HOM05D004021 ORTHO05D003767 3.5e-250 869.4 437 99.3
Haze_21872 Corylus avellana HOM05D004021 ORTHO05D003767 1.9e-240 837.0 1385 40.6
Cfa013353 Carpinus fangiana HOM05D004021 ORTHO05D003767 5.5e-240 835.5 1331 41.5
QL12p029472 Quercus lobata HOM05D004021 ORTHO05D003767 1.8e-235 820.5 1329 41.2
CANSAT25G3821 Cannabis sativa HOM05D004021 ORTHO05D003767 3.0e-230 803.1 1368 40.2
CiPaw.07G205800 Carya illinoinensis HOM05D004021 ORTHO05D003767 5.0e-225 785.8 1342 40.1
Manes.16G071666 Manihot esculenta HOM05D004021 ORTHO05D003767 1.2e-213 748.0 1337 39.9
Potri.006G240500 Populus trichocarpa HOM05D004021 ORTHO05D003767 8.3e-212 741.9 1312 38.4
Thecc.09G042000 Theobroma cacao HOM05D004021 ORTHO05D003767 3.0e-209 733.4 1302 38.7
Duzib187G0651 Durio zibethinus HOM05D004021 ORTHO05D003767 6.2e-207 725.7 1306 38.4
Sabra06G0188100 Salix brachista HOM05D004021 ORTHO05D003767 7.6e-205 718.8 1312 38.0
FAN20G0872 Fragaria x ananassa HOM05D004021 ORTHO05D003767 3.2e-203 713.4 437 84.4
Duzib150G1483 Durio zibethinus HOM05D004021 ORTHO05D003767 2.3e-201 707.2 1320 37.3
CiPaw.08G024400 Carya illinoinensis HOM05D004021 ORTHO05D003767 8.7e-193 678.7 1329 38.0
Potri.018G039500 Populus trichocarpa HOM05D004021 ORTHO05D003767 1.5e-192 677.9 1327 36.5
Sabra18G0039500 Salix brachista HOM05D004021 ORTHO05D003767 2.0e-189 667.5 1309 36.5
COL.COLO4_18677 Corchorus olitorius HOM05D004021 ORTHO05D003767 8.4e-188 662.1 1303 37.2
Ciclev10007267m.g Citrus clementina HOM05D004021 ORTHO05D003767 5.4e-187 659.4 1312 37.4
Gohir.A07G023000 Gossypium hirsutum HOM05D004021 ORTHO05D003767 1.0e-185 655.2 1299 36.6
Gorai.001G027600 Gossypium raimondii HOM05D004021 ORTHO05D003767 1.3e-185 654.8 1301 36.1
FAN13G2039 Fragaria x ananassa HOM05D004021 ORTHO05D003767 3.9e-185 653.3 323 100.0
Duzib168G2343 Durio zibethinus HOM05D004021 ORTHO05D003767 8.1e-183 645.6 1256 35.9
Dinv14242 Davidia involucrata HOM05D004021 ORTHO05D003767 2.3e-177 627.5 1355 36.8
Dinv30267 Davidia involucrata HOM05D004021 ORTHO05D003767 2.3e-177 627.5 1329 36.8
Gohir.A07G023100 Gossypium hirsutum HOM05D004021 ORTHO05D003767 3.2e-171 607.1 1297 35.2
Gohir.D07G026600 Gossypium hirsutum HOM05D004021 ORTHO05D003767 3.5e-170 603.6 1258 35.1
Gorai.001G027700 Gossypium raimondii HOM05D004021 ORTHO05D003767 7.9e-170 602.4 1292 34.9
Gohir.D07G026700 Gossypium hirsutum HOM05D004021 ORTHO05D003767 4.8e-167 593.2 1292 34.8
FAN05G2999 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.4e-145 521.9 263 99.2
TAR383G0364 Trochodendron aralioides HOM05D004021 ORTHO05D003767 6.1e-130 469.9 1476 30.0
TWI63G0612 Tripterygium wilfordii HOM05D004021 ORTHO05D003767 1.2e-128 465.7 1307 30.8
Glyma.06G083500 Glycine max HOM05D004021 ORTHO05D003767 1.0e-121 442.6 1314 31.6
Psat5g022840 Pisum sativum HOM05D004021 ORTHO05D003767 1.4e-121 442.2 1316 31.5
Phvul.009G107600 Phaseolus vulgaris HOM05D004021 ORTHO05D003767 6.8e-121 439.9 1325 31.8
Lj1g0012897 Lotus japonicus HOM05D004021 ORTHO05D003767 8.8e-121 439.5 1311 30.8
Psat5g022920 Pisum sativum HOM05D004021 ORTHO05D003767 9.2e-118 429.5 1318 31.6
VMungo1309G0329 Vigna mungo HOM05D004021 ORTHO05D003767 1.7e-116 425.2 1316 31.1
Glyma.04G081800 Glycine max HOM05D004021 ORTHO05D003767 2.9e-116 424.5 1308 31.4
TPR.G1392 Trifolium pratense HOM05D004021 ORTHO05D003767 6.6e-116 423.3 1308 30.9
Actinidia14666 Actinidia chinensis HOM05D004021 ORTHO05D003767 2.8e-114 417.9 1340 29.9
Ca_15608_v3 Cicer arietinum L. HOM05D004021 ORTHO05D003767 6.1e-114 416.8 1304 31.7
Sed0007846 Sechium edule HOM05D004021 ORTHO05D003767 6.1e-114 416.8 1318 30.6
GSVIVG01035651001 Vitis vinifera HOM05D004021 ORTHO05D003767 6.1e-114 416.8 1056 32.4
CSS0009602 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 1.5e-112 412.1 1348 30.7
Medtr3g110132 Medicago truncatula HOM05D004021 ORTHO05D003767 1.5e-112 412.1 1318 31.0
MELO3C003457.2 Cucumis melo HOM05D004021 ORTHO05D003767 1.4e-110 405.6 1298 29.5
arahy.Tifrunner.gnm1.ann1.QM1LQ0 Arachis hypogaea HOM05D004021 ORTHO05D003767 1.0e-108 399.4 1300 30.9
Medtr3g110082 Medicago truncatula HOM05D004021 ORTHO05D003767 6.6e-108 396.7 1315 30.6
Lalb_Chr01g0011141 Lupinus albus HOM05D004021 ORTHO05D003767 1.0e-105 389.4 1307 30.1
CsaV3_3G048630 Cucumis sativus L. HOM05D004021 ORTHO05D003767 2.9e-103 381.3 1296 29.9
Lalb_Chr11g0064441 Lupinus albus HOM05D004021 ORTHO05D003767 8.3e-103 379.8 1307 29.5
Lalb_Chr08g0243171 Lupinus albus HOM05D004021 ORTHO05D003767 4.6e-101 374.0 1293 29.3
Lalb_Chr11g0064431 Lupinus albus HOM05D004021 ORTHO05D003767 1.6e-98 365.5 1296 29.2
ClCG11G015210 Citrullus lanatus HOM05D004021 ORTHO05D003767 2.0e-96 358.6 1054 32.1
Rhsim07G0152700 Rhododendron simsii HOM05D004021 ORTHO05D003767 2.1e-90 338.6 1309 28.6
Actinidia15734 Actinidia chinensis HOM05D004021 ORTHO05D003767 1.1e-89 336.3 1321 28.3
Atru.chr7.2140 Acer truncatum HOM05D004021 ORTHO05D003767 1.2e-88 332.8 827 33.4
THA.LOC104799199 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 1.3e-87 329.3 1307 27.8
THA.LOC104814779 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 4.6e-85 320.9 1302 28.3
Lj8A589G31 Lonicera japonica HOM05D004021 ORTHO05D003767 8.6e-84 316.6 1324 28.1
PGR044G0442 Punica granatum HOM05D004021 ORTHO05D003767 4.7e-82 310.8 1336 27.2
TAR626G0792 Trochodendron aralioides HOM05D004021 ORTHO05D003767 2.6e-80 305.1 565 38.6
Sed0002796 Sechium edule HOM05D004021 ORTHO05D003767 5.6e-75 287.3 1297 27.4
MELO3C011152.2 Cucumis melo HOM05D004021 ORTHO05D003767 4.8e-74 284.3 1311 26.7
Aa31LG3G15670 Aethionema arabicum HOM05D004021 ORTHO05D003767 2.4e-73 282.0 1269 27.2
ClCG08G012320 Citrullus lanatus HOM05D004021 ORTHO05D003767 2.4e-73 282.0 1290 27.3
CsaV3_2G030990 Cucumis sativus L. HOM05D004021 ORTHO05D003767 4.0e-73 281.2 1328 26.4
Nn2g11674 Nelumbo nucifera HOM05D004021 ORTHO05D003767 2.4e-70 271.9 1426 25.9
Nn3g18104 Nelumbo nucifera HOM05D004021 ORTHO05D003767 1.3e-68 266.2 1319 25.5
Eucgr.C02901 Eucalyptus grandis HOM05D004021 ORTHO05D003767 3.3e-67 261.5 1288 26.2
vmacro05366 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 7.6e-64 250.4 1256 26.4
AT5G11530 Arabidopsis thaliana HOM05D004021 ORTHO05D003767 1.4e-62 246.1 1270 26.2
Cpa.g.sc7.256 Carica papaya HOM05D004021 ORTHO05D003767 1.2e-61 243.0 398 39.2
AL6G22200 Arabidopsis lyrata HOM05D004021 ORTHO05D003767 1.3e-60 239.6 1272 25.7
MBI01_g30860_MAGBIO Magnolia biondii HOM05D004021 ORTHO05D003767 1.8e-60 239.2 1337 25.2
Carub.0006s1000 Capsella rubella HOM05D004021 ORTHO05D003767 3.0e-60 238.4 1282 26.5
Thhalv10003568m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 7.4e-59 233.8 1275 26.0
Sp6g32070 Schrenkiella parvula HOM05D004021 ORTHO05D003767 1.6e-58 232.6 1280 26.3
Nitab4.5_0000664g0210 Nicotiana tabacum HOM05D004021 ORTHO05D003767 2.2e-55 222.2 1292 25.4
Nitab4.5_0000664g0250 Nicotiana tabacum HOM05D004021 ORTHO05D003767 1.4e-54 219.5 1316 24.5
Cpa.g.sc7.255 Carica papaya HOM05D004021 ORTHO05D003767 3.2e-54 218.4 592 31.2
CAN.G309.87 Capsicum annuum HOM05D004021 ORTHO05D003767 7.9e-53 213.8 1329 24.5
CARHR201690 Cardamine hirsuta HOM05D004021 ORTHO05D003767 3.0e-52 211.8 1279 25.3
Peaxi162Scf00276g00210 Petunia axillaris HOM05D004021 ORTHO05D003767 3.9e-52 211.5 1313 23.8
BcaNung01931 Brassica carinata HOM05D004021 ORTHO05D003767 1.9e-51 209.1 1258 25.8
Nitab4.5_0001567g0120 Nicotiana tabacum HOM05D004021 ORTHO05D003767 4.3e-51 208.0 1319 24.5
Eucgr.E03518 Eucalyptus grandis HOM05D004021 ORTHO05D003767 2.1e-50 205.7 714 29.0
Aa31LG11G4580 Aethionema arabicum HOM05D004021 ORTHO05D003767 1.2e-48 199.9 1238 24.0
Nitab4.5_0001567g0150 Nicotiana tabacum HOM05D004021 ORTHO05D003767 3.4e-48 198.4 1298 24.2
Atru.chr7.2139 Acer truncatum HOM05D004021 ORTHO05D003767 1.8e-44 186.0 270 42.2
CSS0003638 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 1.9e-43 182.6 1330 23.8
BcaNung03924 Brassica carinata HOM05D004021 ORTHO05D003767 3.3e-43 181.8 1259 24.9
BcaC03g13370 Brassica carinata HOM05D004021 ORTHO05D003767 4.3e-43 181.4 1250 24.0
C02p05090 Brassica napus HOM05D004021 ORTHO05D003767 4.3e-43 181.4 1250 24.0
BolC7t44742H Brassica oleracea HOM05D004021 ORTHO05D003767 4.3e-43 181.4 1259 25.0
C07p42110 Brassica napus HOM05D004021 ORTHO05D003767 7.4e-43 180.6 1259 24.9
Dinv38014 Davidia involucrata HOM05D004021 ORTHO05D003767 1.6e-42 179.5 733 27.8
BolC2t06463H Brassica oleracea HOM05D004021 ORTHO05D003767 4.1e-41 174.9 1254 23.8
PGSC0003DMG401018585 Solanum tuberosum HOM05D004021 ORTHO05D003767 2.6e-40 172.2 1325 23.4
BolC3t13094H Brassica oleracea HOM05D004021 ORTHO05D003767 1.0e-39 170.2 1272 24.5
arahy.Tifrunner.gnm1.ann1.E545QA Arachis hypogaea HOM05D004021 ORTHO05D003767 3.8e-39 168.3 1289 23.5
A06p36400 Brassica napus HOM05D004021 ORTHO05D003767 3.8e-39 168.3 1253 24.3
BraA02t05084Z Brassica rapa HOM05D004021 ORTHO05D003767 1.1e-38 166.8 1254 23.6
DCAR_007709 Daucus carota HOM05D004021 ORTHO05D003767 4.2e-38 164.9 1277 24.0
BraA06t26563Z Brassica rapa HOM05D004021 ORTHO05D003767 5.5e-38 164.5 1250 24.0
A02p01040 Brassica napus HOM05D004021 ORTHO05D003767 9.4e-38 163.7 1254 23.5
BraA03t09842Z Brassica rapa HOM05D004021 ORTHO05D003767 1.1e-35 156.8 1273 23.9
Solyc11g071250.3 Solanum lycopersicum HOM05D004021 ORTHO05D003767 2.6e-35 155.6 1345 23.3
Oeu031555.1 Olea europaea HOM05D004021 ORTHO05D003767 9.7e-35 153.7 1306 24.7
Sopen11g028940 Solanum pennellii HOM05D004021 ORTHO05D003767 3.7e-34 151.8 1350 23.8
SHI18661 Sapria himalayana HOM05D004021 ORTHO05D003767 1.1e-33 150.2 547 29.6
Hund03406 Selenicereus undatus HOM05D012164 ORTHO05D003767 1.8e-33 149.4 1378 23.9
Oeu012193.1 Olea europaea HOM05D004021 ORTHO05D003767 5.3e-33 147.9 1317 22.9
BcaB01g05477 Brassica carinata HOM05D004021 ORTHO05D003767 1.2e-32 146.7 1274 24.3
Dinv30474 Davidia involucrata HOM05D004021 ORTHO05D003767 5.9e-32 144.4 717 27.6
Rhsim08G0224000 Rhododendron simsii HOM05D004021 ORTHO05D003767 5.5e-30 137.9 988 23.4
Sc09g0009160 Simmondsia chinensis HOM05D012164 ORTHO05D003767 1.2e-29 136.7 1310 22.5
Lj8P589T23 Lonicera japonica HOM05D004021 ORTHO05D003767 3.6e-29 135.2 560 28.6
SalBow1G4226 Salvia bowleyana HOM05D004021 ORTHO05D003767 4.7e-29 134.8 1079 23.2
PSO782G1327 Papaver somniferum HOM05D004021 ORTHO05D003767 6.1e-29 134.4 1229 24.8
MSTRG.1655 Avicennia marina HOM05D004021 ORTHO05D003767 7.9e-29 134.0 1304 22.3
Lalb_Chr24g0396931 Lupinus albus HOM05D004021 ORTHO05D003767 2.2e-26 125.9 1331 22.2
vmacro18883 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 7.0e-25 120.9 1274 22.1
Cpa.g.sc7.254 Carica papaya HOM05D004021 ORTHO05D003767 4.5e-24 118.2 108 55.6
Peaxi162Scf00657g00058 Petunia axillaris HOM05D004021 ORTHO05D003767 1.4e-20 106.7 1343 21.8
Hund19530 Selenicereus undatus HOM05D012164 ORTHO05D003767 8.8e-20 104.0 1284 23.4
Atru.chr7.2138 Acer truncatum HOM05D004021 ORTHO05D003767 2.0e-19 102.8 99 54.5
Lalb_Chr22g0352261 Lupinus albus HOM05D004021 ORTHO05D003767 2.6e-19 102.4 469 26.4
TAR626G0813 Trochodendron aralioides HOM05D004021 ORTHO05D003767 3.3e-19 102.1 239 34.3
Nitab4.5_0002178g0010 Nicotiana tabacum HOM05D004021 ORTHO05D003767 7.5e-19 100.9 619 26.0
ECA233G1986 Erigeron canadensis HOM05D004021 ORTHO05D003767 1.7e-18 99.8 1268 22.2
Thhalv10015703m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 2.2e-18 99.4 1269 22.4
Lj8A589T33 Lonicera japonica HOM05D004021 ORTHO05D003767 2.8e-18 99.0 216 33.3
BcaNung04838 Brassica carinata HOM05D004021 ORTHO05D003767 1.4e-17 96.7 281 33.1
EL10Ac2g04051 Beta vulgaris HOM05D012164 ORTHO05D003767 7.0e-17 94.4 1088 23.1
Migut.A00223 Erythranthe guttata HOM05D004021 ORTHO05D003767 9.1e-17 94.0 124 43.5
C03p05810 Brassica napus HOM05D000602 ORTHO05D006896 1.6e-16 93.2 829 23.9
Migut.E01516 Erythranthe guttata HOM05D004021 ORTHO05D003767 1.6e-16 93.2 117 43.6
SGA_v2.0_scaffold169G38653 Striga asiatica HOM05D004021 ORTHO05D003767 4.5e-16 91.7 110 45.5
Lalb_Chr14g0372341 Lupinus albus HOM05D004021 ORTHO05D003767 5.9e-16 91.3 1021 22.6
Aqoxy7G01578 Aquilegia oxysepala HOM05D065736 ORTHO05D038511 2.2e-15 89.4 711 23.2
Lj4g0004076 Lotus japonicus HOM05D032889 ORTHO05D003767 2.2e-15 89.4 108 38.9
ATR0315G010 Amborella trichopoda HOM05D004021 ORTHO05D003767 1.9e-14 86.3 149 32.9
SGA_v2.0_scaffold163G38081 Striga asiatica HOM05D004021 ORTHO05D003767 1.9e-14 86.3 110 41.8
A03p05080 Brassica napus HOM05D000602 ORTHO05D006896 5.5e-14 84.7 827 23.5
DCAR_003118 Daucus carota HOM05D004021 ORTHO05D003767 7.2e-14 84.3 1048 22.2
MSTRG.14021 Avicennia marina HOM05D004021 ORTHO05D003767 3.6e-13 82.0 286 29.0
SalBow4G0344 Salvia bowleyana HOM05D004021 ORTHO05D003767 4.7e-13 81.6 114 39.5
AUR62009309 Chenopodium quinoa HOM05D012164 ORTHO05D003767 2.3e-12 79.3 99 39.4
Oeu015740.1 Olea europaea HOM05D004021 ORTHO05D003767 4.0e-12 78.6 544 25.2
Aqoxy4G01254 Aquilegia oxysepala HOM05D065736 ORTHO05D038511 8.8e-12 77.4 409 25.7
AUR62041723 Chenopodium quinoa HOM05D012164 ORTHO05D003767 7.5e-11 74.3 1165 22.5
Lsat_1_v5_gn_6_64101 Lactuca sativa HOM05D004021 ORTHO05D003767 9.8e-11 73.9 1254 21.5
Nitab4.5_0000500g0270 Nicotiana tabacum HOM05D004021 ORTHO05D003767 1.3e-10 73.6 676 23.2
Ah.10g035100 Amaranthus hybridus HOM05D012164 ORTHO05D003767 1.7e-10 73.2 142 33.8
Lalb_Chr22g0352251 Lupinus albus HOM05D004021 ORTHO05D003767 2.2e-10 72.8 310 25.5
TAR626G1566 Trochodendron aralioides HOM05D004021 ORTHO05D003767 3.7e-10 72.0 379 25.6
Cc08_g09190 Coffea canephora HOM05D004021 ORTHO05D003767 4.8e-10 71.6 586 23.7
Glyma.17G195000 Glycine max HOM05D004021 ORTHO05D003767 1.1e-09 70.5 78 48.7
unitig_578.g16592 Utricularia gibba HOM05D004021 ORTHO05D003767 1.1e-09 70.5 110 41.8
SEGI_07029 Sequoiadendron giganteum HOM05D004021 ORTHO05D003767 4.1e-09 68.6 68 41.2
CDE05G1167 Ceratophyllum demersum HOM05D004021 ORTHO05D003767 5.4e-09 68.2 119 36.1
unitig_26.g9789 Utricularia gibba HOM05D004021 ORTHO05D003767 9.1e-09 67.4 105 38.1
HanXRQChr09g0276591 Helianthus annuus HOM05D004021 ORTHO05D003767 2.0e-08 66.2 575 25.6
CDE05G1483 Ceratophyllum demersum HOM05D050580 ORTHO05D003767 4.5e-08 65.1 104 36.5
Lsat_1_v5_gn_4_94561 Lactuca sativa HOM05D004021 ORTHO05D003767 7.7e-08 64.3 1101 20.7
HPP92_026866 Vanilla planifolia HOM05D004021 ORTHO05D003767 7.7e-08 64.3 78 37.2
Ah.16g105370 Amaranthus hybridus HOM05D012164 ORTHO05D003767 1.5e-06 60.1 66 43.9
SEGI_32539 Sequoiadendron giganteum HOM05D021706 ORTHO05D018121 2.5e-06 59.3 93 35.5
SEGI_37840 Sequoiadendron giganteum HOM05D028836 ORTHO05D003767 2.5e-06 59.3 61 42.6
Dinv10761 Davidia involucrata HOM05D024977 ORTHO05D003767 7.2e-06 57.8 91 36.3
Dinv30643 Davidia involucrata HOM05D024977 ORTHO05D003767 7.2e-06 57.8 91 36.3
Os01g0229300 Oryza sativa ssp. japonica HOM05D018893 ORTHO05D020945 7.2e-06 57.8 72 40.3
unitig_85.g27153 Utricularia gibba HOM05D004021 ORTHO05D003767 7.2e-06 57.8 116 33.6


User provided reference genes

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