Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g35850 Fragaria vesca HOM05D003951 ORTHO05D005378 0.0e+00 1932.9 989 100.0
FAN27G3265 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1908.6 989 98.5
FAN15G0863 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1906.7 989 98.3
FAN20G1017 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1902.9 989 98.5
RcHm_v2.0_Chr6g0305971 Rosa chinensis HOM05D003951 ORTHO05D005378 0.0e+00 1842.4 990 94.3
Prupe.1G450600 Prunus persica HOM05D003951 ORTHO05D005378 0.0e+00 1682.9 990 84.7
MD15G1095600 Malus domestica HOM05D003951 ORTHO05D005378 0.0e+00 1635.5 990 82.7
MD08G1115900 Malus domestica HOM05D003951 ORTHO05D005378 0.0e+00 1622.8 987 82.2
Dinv30270 Davidia involucrata HOM05D003951 ORTHO05D005378 0.0e+00 1525.8 987 76.8
Manes.03G061800 Manihot esculenta HOM05D003951 ORTHO05D005378 0.0e+00 1519.2 987 76.2
Cfa013355 Carpinus fangiana HOM05D003951 ORTHO05D005378 0.0e+00 1518.1 987 77.0
Hma1.2p1_0590F.1_g185010 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 0.0e+00 1515.7 987 75.9
GSVIVG01035648001 Vitis vinifera HOM05D003951 ORTHO05D005378 0.0e+00 1511.9 989 76.4
CSS0015540 Camellia sinensis var. sinensis HOM05D003951 ORTHO05D005378 0.0e+00 1497.6 986 76.4
Thecc.09G042400 Theobroma cacao HOM05D003951 ORTHO05D005378 0.0e+00 1492.2 988 75.2
CiPaw.08G024600 Carya illinoinensis HOM05D003951 ORTHO05D005378 0.0e+00 1487.2 986 75.7
Dinv14244 Davidia involucrata HOM05D003951 ORTHO05D005378 0.0e+00 1484.2 955 76.4
Lalb_Chr08g0243161 Lupinus albus HOM05D003951 ORTHO05D005378 0.0e+00 1482.2 987 73.2
TAR383G0035 Trochodendron aralioides HOM05D003951 ORTHO05D005378 0.0e+00 1481.5 987 75.0
CANSAT25G2930 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1479.9 987 74.0
Potri.018G039800 Populus trichocarpa HOM05D003951 ORTHO05D005378 0.0e+00 1478.0 987 74.0
Atru.chr7.2135 Acer truncatum HOM05D003951 ORTHO05D005378 0.0e+00 1476.1 985 74.7
Glyma.04G082000 Glycine max HOM05D003951 ORTHO05D005378 0.0e+00 1475.3 987 73.7
Cpa.g.sc7.257 Carica papaya HOM05D003951 ORTHO05D005378 0.0e+00 1472.6 987 74.1
Duzib187G0774 Durio zibethinus HOM05D003951 ORTHO05D005378 0.0e+00 1471.8 994 73.4
QL12p029450 Quercus lobata HOM05D003951 ORTHO05D005378 0.0e+00 1471.4 986 73.8
Glyma.06G083700 Glycine max HOM05D003951 ORTHO05D005378 0.0e+00 1467.6 987 72.8
Gohir.D06G093700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1467.2 986 73.2
arahy.Tifrunner.gnm1.ann1.ZA6ZKK Arachis hypogaea HOM05D003951 ORTHO05D005378 0.0e+00 1466.4 985 71.8
Gorai.010G108200 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1464.9 984 73.1
TWI32G0786 Tripterygium wilfordii HOM05D003951 ORTHO05D005378 0.0e+00 1464.5 987 72.9
arahy.Tifrunner.gnm1.ann1.6KB6B4 Arachis hypogaea HOM05D003951 ORTHO05D005378 0.0e+00 1463.0 985 71.6
Psat5g022720 Pisum sativum HOM05D003951 ORTHO05D005378 0.0e+00 1461.4 985 72.2
Lalb_Chr23g0269551 Lupinus albus HOM05D003951 ORTHO05D005378 0.0e+00 1459.5 985 72.3
Ciclev10007348m.g Citrus clementina HOM05D003951 ORTHO05D005378 0.0e+00 1456.4 986 73.9
Medtr3g110140 Medicago truncatula HOM05D003951 ORTHO05D005378 0.0e+00 1456.4 987 72.2
Gohir.A06G094100 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1453.3 986 72.5
Lj1g0011830 Lotus japonicus HOM05D003951 ORTHO05D005378 0.0e+00 1453.3 987 71.9
VMungo1309G1090 Vigna mungo HOM05D003951 ORTHO05D005378 0.0e+00 1453.3 988 72.3
Potri.006G240300 Populus trichocarpa HOM05D003951 ORTHO05D005378 0.0e+00 1449.9 987 73.3
Sabra18G0039700 Salix brachista HOM05D003951 ORTHO05D005378 0.0e+00 1446.8 986 72.9
Ca_15606_v3 Cicer arietinum L. HOM05D003951 ORTHO05D005378 0.0e+00 1445.3 985 71.6
Gohir.D13G192700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1442.9 987 72.0
Nn2g11661 Nelumbo nucifera HOM05D003951 ORTHO05D005378 0.0e+00 1440.6 985 71.9
Phvul.009G107800 Phaseolus vulgaris HOM05D003951 ORTHO05D005378 0.0e+00 1439.5 987 71.1
Gorai.013G218700 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1439.1 987 71.8
Sabra06G0187900 Salix brachista HOM05D003951 ORTHO05D005378 0.0e+00 1435.6 1010 71.2
TPR.G1335 Trifolium pratense HOM05D003951 ORTHO05D005378 0.0e+00 1435.6 987 71.3
Gohir.A13G186000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1434.5 987 71.7
Aqoxy7G01531 Aquilegia oxysepala HOM05D003951 ORTHO05D005378 0.0e+00 1434.1 988 70.7
CANSAT56G2409 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1434.1 992 72.3
Gohir.D08G272000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1432.2 985 71.7
Gorai.004G290400 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1431.0 985 71.7
CANSAT56G0789 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1424.8 992 72.3
Gohir.A08G250500 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1417.9 985 71.1
MBI04_g14936_MAGBIO Magnolia biondii HOM05D003951 ORTHO05D005378 0.0e+00 1417.1 990 71.5
Thhalv10012570m.g Eutrema salsugineum HOM05D003951 ORTHO05D005378 0.0e+00 1413.7 987 70.5
PGR044G0887 Punica granatum HOM05D003951 ORTHO05D005378 0.0e+00 1412.5 980 71.7
Hund19527 Selenicereus undatus HOM05D003951 ORTHO05D005378 0.0e+00 1405.2 987 70.0
vmacro10453 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 0.0e+00 1404.8 1007 70.1
Eucgr.C02905 Eucalyptus grandis HOM05D003951 ORTHO05D005378 0.0e+00 1404.0 979 70.6
Cc06_g04830 Coffea canephora HOM05D003951 ORTHO05D005378 0.0e+00 1401.7 989 70.0
Nitab4.5_0010350g0010 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1399.8 985 69.6
Sp6g32040 Schrenkiella parvula HOM05D003951 ORTHO05D005378 0.0e+00 1399.4 987 69.9
MSTRG.19211 Avicennia marina HOM05D003951 ORTHO05D005378 0.0e+00 1394.0 987 68.9
Oeu038879.1 Olea europaea HOM05D003951 ORTHO05D005378 0.0e+00 1389.8 987 68.5
BcaC03g13375 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1389.4 986 69.0
BcaNung01934 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1385.9 987 68.8
Sc23g0005190 Simmondsia chinensis HOM05D003951 ORTHO05D005378 0.0e+00 1385.5 986 69.9
Nitab4.5_0000132g0420 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1384.0 985 69.2
THA.LOC104814774 Tarenaya hassleriana HOM05D003951 ORTHO05D005378 0.0e+00 1384.0 987 69.8
EL10Ac2g04048 Beta vulgaris HOM05D003951 ORTHO05D005378 0.0e+00 1383.2 987 69.0
Nitab4.5_0008726g0020 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1381.3 986 69.9
C02p05210 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1380.2 986 68.9
PSO210G0075 Papaver somniferum HOM05D003951 ORTHO05D005378 0.0e+00 1379.4 990 69.3
BolC2t06471H Brassica oleracea HOM05D003951 ORTHO05D005378 0.0e+00 1378.6 1000 68.1
CARHR201660 Cardamine hirsuta HOM05D003951 ORTHO05D005378 0.0e+00 1378.6 985 68.6
PSO210G7231 Papaver somniferum HOM05D003951 ORTHO05D005378 0.0e+00 1376.7 990 69.1
ECA233G3193 Erigeron canadensis HOM05D003951 ORTHO05D005378 0.0e+00 1376.3 956 70.3
Solyc09g008610.4 Solanum lycopersicum HOM05D003951 ORTHO05D005378 0.0e+00 1375.1 985 68.5
A10p26200 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1374.4 986 68.6
AL6G22230 Arabidopsis lyrata HOM05D003951 ORTHO05D005378 0.0e+00 1373.2 985 68.4
BcaB08g37043 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1372.8 986 68.7
DCAR_004489 Daucus carota HOM05D003951 ORTHO05D005378 0.0e+00 1372.5 1083 65.3
AT5G11560 Arabidopsis thaliana HOM05D003951 ORTHO05D005378 0.0e+00 1371.7 985 68.5
Sopen09g003410 Solanum pennellii HOM05D003951 ORTHO05D005378 0.0e+00 1371.3 988 68.2
Peaxi162Scf01195g00118 Petunia axillaris HOM05D003951 ORTHO05D005378 0.0e+00 1369.0 984 69.2
PGSC0003DMG400012982 Solanum tuberosum HOM05D003951 ORTHO05D005378 0.0e+00 1369.0 985 68.4
Migut.J00480 Erythranthe guttata HOM05D003951 ORTHO05D005378 0.0e+00 1366.7 985 67.8
Carub.0006s1003 Capsella rubella HOM05D003951 ORTHO05D005378 0.0e+00 1365.5 985 68.2
Sed0007642 Sechium edule HOM05D003951 ORTHO05D005378 0.0e+00 1365.5 988 68.5
MELO3C011151.2 Cucumis melo HOM05D003951 ORTHO05D005378 0.0e+00 1365.1 988 68.2
BcaC04g19214 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1362.4 987 68.1
BraA10t44677Z Brassica rapa HOM05D003951 ORTHO05D005378 0.0e+00 1362.4 1006 67.2
Sed0024259 Sechium edule HOM05D003951 ORTHO05D005378 0.0e+00 1361.7 988 68.0
C09p65250 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1361.3 987 68.1
ClCG08G012310 Citrullus lanatus HOM05D003951 ORTHO05D005378 0.0e+00 1361.3 994 67.7
HanXRQChr08g0221151 Helianthus annuus HOM05D003951 ORTHO05D005378 0.0e+00 1359.0 989 68.6
CsaV3_2G030980 Cucumis sativus L. HOM05D003951 ORTHO05D005378 0.0e+00 1356.3 988 67.8
SalBow3G1921 Salvia bowleyana HOM05D003951 ORTHO05D005378 0.0e+00 1354.0 986 68.3
Lsat_1_v5_gn_6_63741 Lactuca sativa HOM05D003951 ORTHO05D005378 0.0e+00 1345.5 1017 66.0
Oeu017004.2 Olea europaea HOM05D003951 ORTHO05D005378 0.0e+00 1343.9 1082 62.8
BolC9t59353H Brassica oleracea HOM05D003951 ORTHO05D005378 0.0e+00 1341.6 1013 66.2
CAN.G1759.1 Capsicum annuum HOM05D003951 ORTHO05D005378 0.0e+00 1340.9 954 69.1
COL.COLO4_18674 Corchorus olitorius HOM05D003951 ORTHO05D005378 0.0e+00 1340.1 901 74.0
SGA_v2.0_scaffold657G53382 Striga asiatica HOM05D003951 ORTHO05D005378 0.0e+00 1330.5 991 66.4
AUR62041721 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1317.8 987 66.3
AUR62043518 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1317.4 987 66.4
BraA02t05087Z Brassica rapa HOM05D003951 ORTHO05D005378 0.0e+00 1315.4 1002 65.7
ATR0315G102 Amborella trichopoda HOM05D003951 ORTHO05D005378 0.0e+00 1290.8 985 64.8
Lj8A588G18 Lonicera japonica HOM05D003951 ORTHO05D005378 0.0e+00 1279.6 969 66.8
CDE09G1231 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 0.0e+00 1272.7 979 64.1
AUR62009306 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1270.0 987 64.1
A02p01070 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1260.7 987 64.2
Aa31LG3G15640 Aethionema arabicum HOM05D003951 ORTHO05D005378 0.0e+00 1253.4 985 64.7
Nitab4.5_0004281g0080 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1233.4 898 68.5
Medtr3g110090 Medicago truncatula HOM05D003951 ORTHO05D005378 0.0e+00 1232.6 848 70.9
Os05g0230600 Oryza sativa ssp. japonica HOM05D003951 ORTHO05D005378 0.0e+00 1231.9 983 62.5
Zm00001eb350390 Zea mays HOM05D003951 ORTHO05D005378 0.0e+00 1223.4 992 61.6
Zm00001eb284300 Zea mays HOM05D003951 ORTHO05D005378 0.0e+00 1216.1 992 61.8
Ah.16g105420 Amaranthus hybridus HOM05D003951 ORTHO05D005378 0.0e+00 1214.5 1016 61.3
Ah.10g035090 Amaranthus hybridus HOM05D003951 ORTHO05D005378 0.0e+00 1130.5 849 64.9
SGA_v2.0_scaffold40G15445 Striga asiatica HOM05D003951 ORTHO05D005378 0.0e+00 1119.8 882 63.7
CDE02G1137 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 0.0e+00 1093.6 954 58.4
SHI18663 Sapria himalayana HOM05D003951 ORTHO05D005378 2.7e-311 1072.0 810 65.2
Mapoly0001s0045 Marchantia polymorpha HOM05D003951 ORTHO05D005378 3.8e-289 998.4 995 51.4
Pp3c24_6940 Physcomitrium patens HOM05D003951 ORTHO05D005378 2.0e-285 986.1 1001 51.2
Haze_16526 Corylus avellana HOM05D003951 ORTHO05D005378 2.1e-279 966.1 659 72.2
Actinidia14667 Actinidia chinensis HOM05D003951 ORTHO05D005378 5.4e-259 898.3 542 81.0
SMO361G0709 Selaginella moellendorffii HOM05D003951 ORTHO05D005378 5.4e-251 871.7 953 48.8
Ah.16g105540 Amaranthus hybridus HOM05D003951 ORTHO05D005378 7.5e-245 851.3 690 60.4
Lj7A704G78 Lonicera japonica HOM05D003951 ORTHO05D005378 1.2e-231 807.4 658 61.4
Ah.16g105530 Amaranthus hybridus HOM05D003951 ORTHO05D005378 3.0e-209 733.0 530 68.7
AagrBONN_evm.TU.Sc2ySwM_228.1359 Anthoceros agrestis HOM05D003951 ORTHO05D005378 2.1e-207 726.9 885 42.9
Actinidia15735 Actinidia chinensis HOM05D003951 ORTHO05D005378 3.3e-192 676.4 809 48.8
TAR626G1339 Trochodendron aralioides HOM05D003951 ORTHO05D005378 2.7e-170 603.6 363 80.2
HPP92_003925 Vanilla planifolia HOM05D003951 ORTHO05D005378 1.3e-156 558.1 917 39.1
Actinidia14668 Actinidia chinensis HOM05D003951 ORTHO05D005378 7.0e-150 535.8 420 64.8
Haze_16527 Corylus avellana HOM05D003951 ORTHO05D005378 2.8e-143 513.8 297 86.5
Lj7C704T11 Lonicera japonica HOM05D003951 ORTHO05D005378 1.3e-140 505.0 297 83.8
Gohir.A08G250566 Gossypium hirsutum HOM05D003951 ORTHO05D005378 1.3e-135 488.4 282 84.0
CBR_g46228 Chara braunii HOM05D000019 ORTHO05D000048 7.8e-133 479.2 840 35.2
TAR626G0188 Trochodendron aralioides HOM05D003951 ORTHO05D005378 1.3e-111 408.7 257 78.2
PRCOL_00001466 Prasinoderma coloniale HOM05D003951 ORTHO05D005378 1.9e-110 404.8 1055 29.9
TAR626G1232 Trochodendron aralioides HOM05D003951 ORTHO05D005378 2.3e-108 397.9 337 59.9
Cre01.g042550 Chlamydomonas reinhardtii HOM05D003951 ORTHO05D005378 2.4e-105 387.9 1016 31.3
vmacro07087 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 3.1e-105 387.5 664 40.5
unitig_22.g5110 Utricularia gibba HOM05D003951 ORTHO05D020105 1.3e-90 339.0 380 47.6
Hma1.2p1_1163F.1_g262790 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 8.7e-84 316.2 319 50.5
Actinidia13321 Actinidia chinensis HOM05D003951 ORTHO05D005378 5.5e-78 297.0 257 57.2
Psat2g043440 Pisum sativum HOM05D003951 ORTHO05D005378 3.5e-77 294.3 362 44.8
MCO05G363 Micromonas commoda HOM05D003951 ORTHO05D005378 2.5e-75 288.1 430 38.6
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 2.7e-61 241.5 276 48.2
Nn3g18131 Nelumbo nucifera HOM05D003951 ORTHO05D005378 5.9e-56 223.8 145 80.7
BcaB01g05473 Brassica carinata HOM05D003951 ORTHO05D005378 3.8e-55 221.1 129 83.7
C03p05840 Brassica napus HOM05D003951 ORTHO05D005378 4.2e-54 217.6 125 85.6
CBR_g46226 Chara braunii HOM05D003951 ORTHO05D005378 8.0e-53 213.4 184 58.2
Actinidia31233 Actinidia chinensis HOM05D006865 ORTHO05D009005 4.4e-51 207.6 141 71.6
BolC3t13096H Brassica oleracea HOM05D003951 ORTHO05D005378 4.1e-49 201.1 125 81.6
DCAR_004486 Daucus carota HOM05D003951 ORTHO05D035008 8.8e-44 183.3 106 82.1
Peaxi162Scf00110g00822 Petunia axillaris HOM05D003951 ORTHO05D005378 1.0e-39 169.9 203 51.2
BolC3t13097H Brassica oleracea HOM05D003951 ORTHO05D020105 5.0e-39 167.5 109 71.6
BcaB01g05472 Brassica carinata HOM05D003951 ORTHO05D020105 1.1e-38 166.4 109 71.6
C03p05850 Brassica napus HOM05D003951 ORTHO05D020105 1.1e-38 166.4 109 71.6
Cfa023291 Carpinus fangiana HOM05D003951 ORTHO05D005378 6.1e-37 160.6 1046 21.7
Hma1.2p1_1163F.1_g262780 Hydrangea macrophylla HOM05D003951 ORTHO05D033496 7.2e-30 137.1 85 80.0
CiPaw.07G205600 Carya illinoinensis HOM05D003951 ORTHO05D005378 1.7e-26 125.9 82 69.5
Dinv34398 Davidia involucrata HOM05D003951 ORTHO05D005378 2.1e-21 109.0 63 82.5
A03p05100 Brassica napus HOM05D003951 ORTHO05D033496 8.0e-21 107.1 121 55.4
BraA03t09844Z Brassica rapa HOM05D003951 ORTHO05D033496 8.0e-21 107.1 121 55.4
Peaxi162Scf00110g00821 Petunia axillaris HOM05D003951 ORTHO05D035008 3.4e-19 101.7 82 58.5
CiPaw.07G205500 Carya illinoinensis HOM05D003951 ORTHO05D020105 1.1e-17 96.7 70 71.4
EL10Ac6g13930 Beta vulgaris HOM05D001881 ORTHO05D001856 1.4e-17 96.3 62 77.4
CAN.G541.23 Capsicum annuum HOM05D004796 ORTHO05D006527 1.9e-17 95.9 53 81.1
Nn3g18130 Nelumbo nucifera HOM05D003951 ORTHO05D020105 3.2e-17 95.1 72 69.4
Peaxi162Scf00110g00823 Petunia axillaris HOM05D003951 ORTHO05D305850 7.0e-17 94.0 188 35.6
TAR629G0021 Trochodendron aralioides HOM05D003951 ORTHO05D000285 9.2e-17 93.6 199 35.7
SHI18664 Sapria himalayana HOM05D003951 ORTHO05D020105 5.0e-15 87.8 143 40.6
Psat6g121680 Pisum sativum HOM05D000840 ORTHO05D000670 6.6e-15 87.4 47 78.7
Ah.04g155890 Amaranthus hybridus HOM05D003518 ORTHO05D031015 9.5e-14 83.6 61 67.2
Ah.05g173020 Amaranthus hybridus HOM05D003951 ORTHO05D031015 8.9e-12 77.0 61 62.3
Ah.05g172920 Amaranthus hybridus HOM05D003951 ORTHO05D031015 2.0e-11 75.9 61 62.3
Ah.04g157730 Amaranthus hybridus HOM05D031501 ORTHO05D060762 8.6e-07 60.5 37 78.4
Psat0s4854g0040 Pisum sativum HOM05D001108 ORTHO05D001619 9.5e-06 57.0 122 31.1
Psat1g107320 Pisum sativum HOM05D001108 ORTHO05D001619 9.5e-06 57.0 115 32.2


User provided reference genes

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