Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g35770 Fragaria vesca HOM05D005302 ORTHO05D006422 1.2e-299 1032.3 485 100.0
FAN27G3010 Fragaria x ananassa HOM05D005302 ORTHO05D006422 1.5e-291 1005.4 485 98.1
RcHm_v2.0_Chr6g0306001 Rosa chinensis HOM05D005302 ORTHO05D006422 1.1e-276 956.1 491 92.1
FAN20G2881 Fragaria x ananassa HOM05D005302 ORTHO05D006422 5.3e-276 953.7 520 89.0
FAN15G3230 Fragaria x ananassa HOM05D005302 ORTHO05D006422 4.6e-272 940.6 515 88.3
Prupe.1G450300 Prunus persica HOM05D005302 ORTHO05D006422 1.8e-247 859.0 494 82.2
MD15G1095400 Malus domestica HOM05D005302 ORTHO05D006422 5.2e-247 857.4 492 81.5
MD08G1115600 Malus domestica HOM05D005302 ORTHO05D006422 7.7e-243 843.6 492 80.5
CiPaw.08G024700 Carya illinoinensis HOM05D005302 ORTHO05D006422 1.9e-233 812.4 464 80.2
Glyma.04G082500 Glycine max HOM05D005302 ORTHO05D006422 3.6e-232 808.1 484 77.1
PGR044G1364 Punica granatum HOM05D005302 ORTHO05D006422 1.4e-231 806.2 501 74.1
TWI34G0390 Tripterygium wilfordii HOM05D005302 ORTHO05D006422 6.8e-231 803.9 501 74.7
Gorai.009G050600 Gossypium raimondii HOM05D005302 ORTHO05D006422 1.2e-230 803.1 478 76.8
Dinv14245 Davidia involucrata HOM05D005302 ORTHO05D006422 4.4e-230 801.2 465 78.3
Actinidia13324 Actinidia chinensis HOM05D005302 ORTHO05D006422 9.8e-230 800.0 445 80.7
Gohir.D05G049300 Gossypium hirsutum HOM05D005302 ORTHO05D006422 1.3e-229 799.7 478 76.4
Medtr3g110160 Medicago truncatula HOM05D005302 ORTHO05D006422 4.8e-229 797.7 485 75.3
Rhsim02G0179400 Rhododendron simsii HOM05D005302 ORTHO05D006422 8.3e-229 797.0 472 77.8
Glyma.06G084100 Glycine max HOM05D005302 ORTHO05D006422 1.4e-228 796.2 468 77.6
QL12p029391 Quercus lobata HOM05D005302 ORTHO05D006422 1.4e-228 796.2 521 73.1
Ca_15604_v3 Cicer arietinum L. HOM05D005302 ORTHO05D006422 1.2e-227 793.1 468 78.0
Atru.chr7.2133 Acer truncatum HOM05D005302 ORTHO05D006422 5.9e-227 790.8 481 75.1
CSS0024291 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 1.0e-226 790.0 466 77.7
CSS0027627 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 1.0e-226 790.0 466 77.7
TAR624G0168 Trochodendron aralioides HOM05D005302 ORTHO05D006422 1.0e-226 790.0 464 77.8
Psat5g022320 Pisum sativum HOM05D005302 ORTHO05D006422 1.7e-226 789.3 483 75.6
Eucgr.C02909 Eucalyptus grandis HOM05D005302 ORTHO05D006422 6.5e-226 787.3 479 76.0
Manes.16G072000 Manihot esculenta HOM05D005302 ORTHO05D006422 8.5e-226 786.9 496 73.4
Duzib150G0232 Durio zibethinus HOM05D005302 ORTHO05D006422 7.2e-225 783.9 479 74.3
CiPaw.07G205300 Carya illinoinensis HOM05D005302 ORTHO05D006422 9.5e-225 783.5 504 72.4
VMungo1309G1003 Vigna mungo HOM05D005302 ORTHO05D006422 2.8e-224 781.9 485 74.4
Haze_21877 Corylus avellana HOM05D005302 ORTHO05D006422 1.0e-223 780.0 559 67.1
Phvul.009G108200 Phaseolus vulgaris HOM05D005302 ORTHO05D006422 1.4e-223 779.6 470 76.0
Thecc.09G042800 Theobroma cacao HOM05D005302 ORTHO05D006422 8.8e-223 776.9 464 75.6
Lalb_Chr08g0243151 Lupinus albus HOM05D005302 ORTHO05D006422 5.7e-222 774.2 489 73.0
Potri.018G040200 Populus trichocarpa HOM05D005302 ORTHO05D006422 5.7e-222 774.2 462 76.0
Hma1.2p1_0393F.1_g143080 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 7.5e-222 773.9 468 75.9
Nn2g11666 Nelumbo nucifera HOM05D005302 ORTHO05D006422 2.2e-221 772.3 464 76.3
Ciclev10008169m.g Citrus clementina HOM05D005302 ORTHO05D006422 2.4e-220 768.8 472 74.4
CsaV3_2G030970 Cucumis sativus L. HOM05D005302 ORTHO05D006422 7.0e-220 767.3 458 76.0
CANSAT25G0630 Cannabis sativa HOM05D005302 ORTHO05D006422 9.2e-220 766.9 509 70.7
COL.COLO4_18671 Corchorus olitorius HOM05D005302 ORTHO05D006422 1.6e-219 766.1 467 75.2
MELO3C011150.2 Cucumis melo HOM05D005302 ORTHO05D006422 4.5e-219 764.6 453 75.9
Gohir.A05G047400 Gossypium hirsutum HOM05D005302 ORTHO05D006422 5.9e-219 764.2 457 76.1
GSVIVG01035645001 Vitis vinifera HOM05D005302 ORTHO05D006422 7.8e-219 763.8 467 74.7
Lj1g0022106 Lotus japonicus HOM05D005302 ORTHO05D006422 1.3e-218 763.1 425 79.5
arahy.Tifrunner.gnm1.ann1.P7Z4SB Arachis hypogaea HOM05D005302 ORTHO05D006422 2.3e-218 762.3 425 79.1
Gohir.A07G022700 Gossypium hirsutum HOM05D005302 ORTHO05D006422 2.3e-218 762.3 479 73.1
Gorai.001G027200 Gossypium raimondii HOM05D005302 ORTHO05D006422 6.6e-218 760.8 461 74.6
arahy.Tifrunner.gnm1.ann1.R6A5BY Arachis hypogaea HOM05D005302 ORTHO05D006422 8.6e-218 760.4 423 79.2
Cc08_g09240 Coffea canephora HOM05D005302 ORTHO05D006422 9.5e-217 756.9 448 76.8
Gohir.D07G026100 Gossypium hirsutum HOM05D005302 ORTHO05D006422 9.5e-217 756.9 461 74.0
Aqoxy7G03804 Aquilegia oxysepala HOM05D005302 ORTHO05D006422 1.6e-216 756.1 458 74.9
MSTRG.11705 Avicennia marina HOM05D005302 ORTHO05D006422 3.0e-215 751.9 467 73.4
ECA246G0277 Erigeron canadensis HOM05D005302 ORTHO05D006422 4.0e-215 751.5 444 75.9
Peaxi162Scf00822g00210 Petunia axillaris HOM05D005302 ORTHO05D006422 4.0e-215 751.5 459 73.6
Sabra18G0040100 Salix brachista HOM05D005302 ORTHO05D006422 4.0e-215 751.5 486 72.0
Migut.A00220 Erythranthe guttata HOM05D005302 ORTHO05D006422 1.5e-214 749.6 468 72.2
Thhalv10025006m.g Eutrema salsugineum HOM05D005302 ORTHO05D006422 4.4e-214 748.0 487 71.3
Sed0007027 Sechium edule HOM05D005302 ORTHO05D006422 7.5e-214 747.3 468 72.6
CARHR240760 Cardamine hirsuta HOM05D005302 ORTHO05D006422 1.3e-213 746.5 447 75.2
Nitab4.5_0010908g0010 Nicotiana tabacum HOM05D005302 ORTHO05D006422 2.2e-213 745.7 447 74.3
Sp7g30530 Schrenkiella parvula HOM05D005302 ORTHO05D006422 6.4e-213 744.2 472 71.8
AL7G18970 Arabidopsis lyrata HOM05D005302 ORTHO05D006422 5.4e-212 741.1 446 74.4
CAN.G21.50 Capsicum annuum HOM05D005302 ORTHO05D006422 7.0e-212 740.7 450 74.2
EL10Ac2g04046 Beta vulgaris HOM05D005302 ORTHO05D006422 9.2e-212 740.3 473 71.9
Carub.0007s0772 Capsella rubella HOM05D005302 ORTHO05D006422 1.6e-211 739.6 450 73.1
SGA_v2.0_scaffold103G29944 Striga asiatica HOM05D005302 ORTHO05D006422 1.6e-211 739.6 456 73.9
C07p59340 Brassica napus HOM05D005302 ORTHO05D006422 2.0e-211 739.2 450 74.2
BolC7t46379H Brassica oleracea HOM05D005302 ORTHO05D006422 3.5e-211 738.4 449 74.2
HanXRQChr08g0236291 Helianthus annuus HOM05D005302 ORTHO05D006422 4.6e-211 738.0 474 72.4
AT4G32770 Arabidopsis thaliana HOM05D005302 ORTHO05D006422 1.0e-210 736.9 461 72.9
SalBow4G1479 Salvia bowleyana HOM05D005302 ORTHO05D006422 3.0e-210 735.3 433 75.1
PGSC0003DMG400029051 Solanum tuberosum HOM05D005302 ORTHO05D006422 3.0e-210 735.3 445 74.4
Lj8C588T0 Lonicera japonica HOM05D005302 ORTHO05D006422 5.0e-210 734.6 523 67.5
Sopen08g022330 Solanum pennellii HOM05D005302 ORTHO05D006422 3.3e-209 731.9 450 74.0
A03p61580 Brassica napus HOM05D005302 ORTHO05D006422 4.3e-209 731.5 451 73.6
BraA03t15200Z Brassica rapa HOM05D005302 ORTHO05D006422 4.3e-209 731.5 451 73.6
Solyc08g068570.4 Solanum lycopersicum HOM05D005302 ORTHO05D006422 1.2e-208 729.9 450 73.8
DCAR_003119 Daucus carota HOM05D005302 ORTHO05D006422 2.1e-208 729.2 492 70.3
PSO210G3865 Papaver somniferum HOM05D005302 ORTHO05D006422 8.0e-208 727.2 482 69.7
PSO210G0275 Papaver somniferum HOM05D005302 ORTHO05D006422 1.0e-207 726.9 482 69.7
Aa31LG2G17190 Aethionema arabicum HOM05D005302 ORTHO05D006422 5.2e-207 724.5 486 69.3
AUR62009303 Chenopodium quinoa HOM05D005302 ORTHO05D006422 3.7e-205 718.4 498 67.3
Lsat_1_v5_gn_5_33600 Lactuca sativa HOM05D005302 ORTHO05D006422 7.8e-203 710.7 461 71.1
ClCG08G012300 Citrullus lanatus HOM05D005302 ORTHO05D006422 1.7e-202 709.5 469 69.9
unitig_32.g11070 Utricularia gibba HOM05D005302 ORTHO05D006422 7.3e-201 704.1 461 69.6
Os02g0276500 Oryza sativa ssp. japonica HOM05D005302 ORTHO05D006422 1.2e-200 703.4 430 72.6
CDE08G0186 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 4.9e-197 691.4 451 68.1
MBI04_g05261_MAGBIO Magnolia biondii HOM05D005302 ORTHO05D006422 7.8e-195 684.1 554 59.7
Cpa.g.sc7.259 Carica papaya HOM05D005302 ORTHO05D006422 3.9e-194 681.8 378 81.2
Nitab4.5_0000513g0060 Nicotiana tabacum HOM05D005302 ORTHO05D006422 3.3e-193 678.7 483 66.0
Oeu036363.2 Olea europaea HOM05D005302 ORTHO05D006422 4.3e-193 678.3 427 74.0
CDE05G0893 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 8.1e-192 674.1 469 64.6
THA.LOC104803808 Tarenaya hassleriana HOM05D005302 ORTHO05D006422 4.0e-191 671.8 429 72.0
ATR0315G120 Amborella trichopoda HOM05D005302 ORTHO05D006422 5.2e-191 671.4 458 66.4
LjContig00226g0022694 Lotus japonicus HOM05D005302 ORTHO05D006422 2.6e-190 669.1 380 78.2
LjContig00518g0000858 Lotus japonicus HOM05D005302 ORTHO05D006422 2.6e-190 669.1 380 78.2
Hund19525 Selenicereus undatus HOM05D005302 ORTHO05D006422 3.0e-186 655.6 484 66.1
Sc23g0005290 Simmondsia chinensis HOM05D005302 ORTHO05D006422 1.4e-183 646.7 394 74.1
Lj1g0000494 Lotus japonicus HOM05D005302 ORTHO05D006422 1.7e-181 639.8 380 76.3
AUR62041718 Chenopodium quinoa HOM05D005302 ORTHO05D006422 2.9e-181 639.0 454 66.7
Cfa013434 Carpinus fangiana HOM05D005302 ORTHO05D006422 2.7e-179 632.5 390 74.9
Ah.16g105570 Amaranthus hybridus HOM05D005302 ORTHO05D006422 1.5e-177 626.7 373 76.1
Cfa013357 Carpinus fangiana HOM05D005302 ORTHO05D006422 4.8e-176 621.7 506 60.1
HPP92_005269 Vanilla planifolia HOM05D005302 ORTHO05D006422 1.4e-175 620.2 455 62.9
Lj1g0015489 Lotus japonicus HOM05D005302 ORTHO05D006422 8.4e-173 610.9 425 68.2
Cfa013356 Carpinus fangiana HOM05D005302 ORTHO05D006422 3.5e-171 605.5 325 81.2
Haze_21992 Corylus avellana HOM05D005302 ORTHO05D006422 3.7e-168 595.5 518 57.5
AagrBONN_evm.TU.Sc2ySwM_368.1981 Anthoceros agrestis HOM05D005302 ORTHO05D006422 1.4e-167 593.6 417 63.5
vmacro11066 Vaccinium macrocarpon HOM05D005302 ORTHO05D006422 2.6e-166 589.3 408 68.4
Pp3c7_470 Physcomitrium patens HOM05D005302 ORTHO05D006422 7.6e-166 587.8 443 61.2
Mapoly0027s0036 Marchantia polymorpha HOM05D005302 ORTHO05D006422 4.6e-163 578.6 443 59.4
Lj1g0026118 Lotus japonicus HOM05D005302 ORTHO05D006422 3.0e-154 549.3 426 63.1
Pp3c20_5100 Physcomitrium patens HOM05D005302 ORTHO05D006422 3.3e-153 545.8 449 57.0
SMO351G0603 Selaginella moellendorffii HOM05D005302 ORTHO05D006422 2.7e-147 526.2 396 58.3
Zm00001eb237270 Zea mays HOM05D005302 ORTHO05D006422 2.5e-145 519.6 321 69.8
CBR_g222 Chara braunii HOM05D005302 ORTHO05D006422 8.2e-136 488.0 427 54.6
Cc07_g15020 Coffea canephora HOM05D005302 ORTHO05D006422 3.2e-132 476.1 269 77.3
Hma1.2p1_1884F.1_g306470 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 4.2e-124 449.1 249 79.9
Lj7A704G80 Lonicera japonica HOM05D005302 ORTHO05D006422 6.1e-107 392.1 218 79.4
Cre01.g013801 Chlamydomonas reinhardtii HOM05D005302 ORTHO05D006422 2.0e-102 377.1 454 41.2
Hma1.2p1_1884F.1_g306480 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 1.5e-84 317.8 184 77.7
Lj7A704G81 Lonicera japonica HOM05D005302 ORTHO05D006422 6.0e-78 295.8 162 80.9
MCO11G337 Micromonas commoda HOM05D005302 ORTHO05D006422 2.1e-75 287.3 424 41.3
Hma1.2p1_0393F.1_g143070 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 9.0e-66 255.4 148 76.4
CDE05G2043 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 9.9e-65 251.9 357 39.8
FAN24G1627 Fragaria x ananassa HOM05D005302 ORTHO05D006422 3.9e-61 240.0 118 96.6
Glyma.04G082300 Glycine max HOM05D005302 ORTHO05D006422 2.4e-58 230.7 150 71.3
Hma1.2p1_0393F.1_g143090 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 5.8e-57 226.1 169 67.5
SEGI_29042 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 1.7e-56 224.6 110 83.6
SEGI_31241 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 3.2e-47 193.7 148 56.8
Sabra18G0041600 Salix brachista HOM05D005302 ORTHO05D006422 1.1e-44 185.3 111 74.8
Potri.006G240100 Populus trichocarpa HOM05D005302 ORTHO05D006422 1.8e-42 177.9 185 51.9
SEGI_07805 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 2.2e-35 154.5 103 67.0
arahy.Tifrunner.gnm1.ann1.B6YE6K Arachis hypogaea HOM05D005302 ORTHO05D006422 2.6e-33 147.5 186 45.2
CDE05G1694 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 5.3e-18 96.7 61 63.9
Sabra18G0041700 Salix brachista HOM05D005302 ORTHO05D006422 1.7e-16 91.7 60 61.7
BcaC09g52073 Brassica carinata HOM05D002602 ORTHO05D002661 1.5e-07 62.0 41 65.9
TPR.G33960 Trifolium pratense HOM05D005302 ORTHO05D006422 4.7e-06 57.0 34 70.6


User provided reference genes

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