Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g35460 Fragaria vesca HOM05D007429 ORTHO05D003505 7.0e-41 170.2 90 100.0
FAN27G3027 Fragaria x ananassa HOM05D007429 ORTHO05D003505 4.0e-36 154.5 81 100.0
RcHm_v2.0_Chr6g0306421 Rosa chinensis HOM05D007429 ORTHO05D003505 1.6e-32 142.5 81 95.1
FAN20G1676 Fragaria x ananassa HOM05D002792 ORTHO05D003039 2.7e-32 141.7 75 98.7
Prupe.1G447500 Prunus persica HOM05D007429 ORTHO05D003505 9.5e-30 133.3 92 82.6
MD15G1092600 Malus domestica HOM05D007429 ORTHO05D003505 9.9e-27 123.2 83 81.9
MD08G1113300 Malus domestica HOM05D007429 ORTHO05D003505 3.2e-25 118.2 83 78.3
Gohir.A05G046400 Gossypium hirsutum HOM05D007429 ORTHO05D003505 7.1e-25 117.1 93 75.3
Nn6g35292 Nelumbo nucifera HOM05D007429 ORTHO05D003505 6.0e-24 114.0 92 72.8
Duzib168G1390 Durio zibethinus HOM05D007429 ORTHO05D003505 3.9e-23 111.3 92 71.7
PSO824G0083 Papaver somniferum HOM05D007429 ORTHO05D003505 1.9e-22 109.0 93 67.7
PSO173G0075 Papaver somniferum HOM05D007429 ORTHO05D003505 4.3e-22 107.8 93 66.7
Thhalv10015136m.g Eutrema salsugineum HOM05D007429 ORTHO05D003505 7.3e-22 107.1 93 66.7
Sed0003359 Sechium edule HOM05D007429 ORTHO05D003505 1.2e-21 106.3 92 64.1
Ciclev10010039m.g Citrus clementina HOM05D007429 ORTHO05D003505 2.1e-21 105.5 93 68.8
Thecc.09G045900 Theobroma cacao HOM05D007429 ORTHO05D003505 2.1e-21 105.5 84 73.8
CiPaw.07G203700 Carya illinoinensis HOM05D007429 ORTHO05D003505 6.2e-21 104.0 95 66.3
Cc08_g09700 Coffea canephora HOM05D007429 ORTHO05D003505 6.2e-21 104.0 90 64.4
PGR031G3761 Punica granatum HOM05D007429 ORTHO05D003505 1.8e-20 102.4 92 67.4
Sabra06G0186000 Salix brachista HOM05D007429 ORTHO05D003505 2.4e-20 102.1 84 76.2
Gorai.009G049400 Gossypium raimondii HOM05D007429 ORTHO05D003505 4.0e-20 101.3 84 70.2
TWI63G1379 Tripterygium wilfordii HOM05D007429 ORTHO05D003505 5.2e-20 100.9 92 67.4
Potri.006G237800 Populus trichocarpa HOM05D007429 ORTHO05D003505 6.8e-20 100.5 84 75.0
Gohir.D05G048100 Gossypium hirsutum HOM05D007429 ORTHO05D003505 1.5e-19 99.4 84 69.0
Sabra06G0186100 Salix brachista HOM05D008609 ORTHO05D010987 1.5e-19 99.4 84 75.0
CARHR201590 Cardamine hirsuta HOM05D007429 ORTHO05D003505 2.6e-19 98.6 93 61.3
GSVIVG01035615001 Vitis vinifera HOM05D007429 ORTHO05D003505 2.6e-19 98.6 92 66.3
CANSAT25G2095 Cannabis sativa HOM05D007429 ORTHO05D003505 9.9e-19 96.7 93 64.5
Sopen08g020350 Solanum pennellii HOM05D007429 ORTHO05D003505 9.9e-19 96.7 84 69.0
Duzib187G1405 Durio zibethinus HOM05D007429 ORTHO05D003505 1.3e-18 96.3 84 67.9
Solyc08g066520.3 Solanum lycopersicum HOM05D007429 ORTHO05D003505 2.2e-18 95.5 84 67.9
PGSC0003DMG402029142 Solanum tuberosum HOM05D007429 ORTHO05D003505 3.8e-18 94.7 84 67.9
MELO3C003465.2 Cucumis melo HOM05D007429 ORTHO05D003505 4.9e-18 94.4 83 67.5
CsaV3_3G048540 Cucumis sativus L. HOM05D007429 ORTHO05D003505 4.9e-18 94.4 83 67.5
Dinv23374 Davidia involucrata HOM05D007429 ORTHO05D003505 1.4e-17 92.8 84 66.7
THA.LOC104811265 Tarenaya hassleriana HOM05D007429 ORTHO05D003505 1.9e-17 92.4 83 68.7
Manes.16G075000 Manihot esculenta HOM05D007429 ORTHO05D003505 2.4e-17 92.0 87 66.7
Lalb_Chr23g0269661 Lupinus albus HOM05D007429 ORTHO05D003505 3.2e-17 91.7 93 57.0
Medtr3g109720 Medicago truncatula HOM05D007429 ORTHO05D003505 3.2e-17 91.7 83 63.9
Sp6g31990 Schrenkiella parvula HOM05D007429 ORTHO05D003505 3.2e-17 91.7 84 63.1
Gohir.A08G249800 Gossypium hirsutum HOM05D007429 ORTHO05D003505 5.4e-17 90.9 91 61.5
Lj1g0025254 Lotus japonicus HOM05D007429 ORTHO05D003505 5.4e-17 90.9 83 63.9
CSS0002972 Camellia sinensis var. sinensis HOM05D007429 ORTHO05D003505 9.2e-17 90.1 82 65.9
Nn8g39115 Nelumbo nucifera HOM05D007429 ORTHO05D003505 9.2e-17 90.1 90 61.1
CiPaw.08G026200 Carya illinoinensis HOM05D007429 ORTHO05D003505 1.6e-16 89.4 86 64.0
ClCG11G015140 Citrullus lanatus HOM05D007429 ORTHO05D003505 1.6e-16 89.4 83 63.9
Atru.chr7.2081 Acer truncatum HOM05D007429 ORTHO05D003505 2.1e-16 89.0 85 65.9
Gohir.D08G270600 Gossypium hirsutum HOM05D007429 ORTHO05D003505 2.1e-16 89.0 85 64.7
TPR.G15111 Trifolium pratense HOM05D007429 ORTHO05D003505 2.7e-16 88.6 81 61.7
BcaC03g13383 Brassica carinata HOM05D007429 ORTHO05D003505 3.5e-16 88.2 84 60.7
A02p01120 Brassica napus HOM05D007429 ORTHO05D003505 3.5e-16 88.2 84 60.7
C02p05300 Brassica napus HOM05D007429 ORTHO05D003505 3.5e-16 88.2 84 60.7
BolC2t06478H Brassica oleracea HOM05D007429 ORTHO05D003505 3.5e-16 88.2 84 60.7
BraA02t05091Z Brassica rapa HOM05D007429 ORTHO05D003505 3.5e-16 88.2 84 60.7
Carub.0006s1011 Capsella rubella HOM05D007429 ORTHO05D003505 3.5e-16 88.2 84 59.5
Glyma.04G084800 Glycine max HOM05D007429 ORTHO05D003505 3.5e-16 88.2 83 63.9
Glyma.06G086300 Glycine max HOM05D007429 ORTHO05D003505 3.5e-16 88.2 83 63.9
A10p26140 Brassica napus HOM05D007429 ORTHO05D003505 4.6e-16 87.8 84 60.7
BraA10t44673Z Brassica rapa HOM05D007429 ORTHO05D003505 4.6e-16 87.8 84 60.7
Aa31LG3G15560 Aethionema arabicum HOM05D007429 ORTHO05D003505 6.0e-16 87.4 84 63.1
BcaB08g37037 Brassica carinata HOM05D007429 ORTHO05D003505 6.0e-16 87.4 84 60.7
BcaC04g19209 Brassica carinata HOM05D007429 ORTHO05D003505 7.8e-16 87.0 84 60.7
BolC9t59348H Brassica oleracea HOM05D007429 ORTHO05D003505 7.8e-16 87.0 84 60.7
Actinidia14679 Actinidia chinensis HOM05D007429 ORTHO05D003505 1.0e-15 86.7 81 61.7
AL6G22340 Arabidopsis lyrata HOM05D007429 ORTHO05D003505 1.0e-15 86.7 84 59.5
C09p65190 Brassica napus HOM05D007429 ORTHO05D003505 1.0e-15 86.7 84 60.7
AT5G11630 Arabidopsis thaliana HOM05D007429 ORTHO05D003505 1.7e-15 85.9 84 58.3
arahy.Tifrunner.gnm1.ann1.ZH3G1A Arachis hypogaea HOM05D007429 ORTHO05D003505 3.9e-15 84.7 109 51.4
Carub.0007s2409 Capsella rubella HOM05D006762 ORTHO05D003505 5.1e-15 84.3 98 56.1
Cfa013372 Carpinus fangiana HOM05D007429 ORTHO05D003505 8.7e-15 83.6 85 60.0
Thhalv10005203m.g Eutrema salsugineum HOM05D007429 ORTHO05D003505 8.7e-15 83.6 82 63.4
Hund19504 Selenicereus undatus HOM05D007429 ORTHO05D003505 1.9e-14 82.4 83 63.9
EL10Ac2g04004 Beta vulgaris HOM05D007429 ORTHO05D003505 2.5e-14 82.0 83 62.7
Gorai.004G288500 Gossypium raimondii HOM05D007429 ORTHO05D003505 2.5e-14 82.0 79 63.3
TWI34G0747 Tripterygium wilfordii HOM05D007429 ORTHO05D003505 2.5e-14 82.0 83 63.9
AT4G17310 Arabidopsis thaliana HOM05D006762 ORTHO05D003505 5.6e-14 80.9 99 56.6
Actinidia13337 Actinidia chinensis HOM05D007429 ORTHO05D003505 7.3e-14 80.5 86 60.5
Phvul.009G110300 Phaseolus vulgaris HOM05D007429 ORTHO05D003505 7.3e-14 80.5 83 57.8
CANSAT21G1567 Cannabis sativa HOM05D006762 ORTHO05D003505 9.6e-14 80.1 88 52.3
CARHR187590 Cardamine hirsuta HOM05D007429 ORTHO05D003505 9.6e-14 80.1 82 63.4
Prupe.5G068300 Prunus persica HOM05D006762 ORTHO05D003505 9.6e-14 80.1 100 55.0
Aqoxy7G01463 Aquilegia oxysepala HOM05D007429 ORTHO05D003505 1.6e-13 79.3 82 57.3
CSS0037511 Camellia sinensis var. sinensis HOM05D007429 ORTHO05D003505 1.6e-13 79.3 86 60.5
Eucgr.C00555 Eucalyptus grandis HOM05D007429 ORTHO05D003505 2.1e-13 79.0 86 59.3
Eucgr.C00601 Eucalyptus grandis HOM05D007429 ORTHO05D003505 2.1e-13 79.0 86 59.3
Manes.07G073601 Manihot esculenta HOM05D007429 ORTHO05D003505 2.1e-13 79.0 81 60.5
Oeu030718.1 Olea europaea HOM05D007429 ORTHO05D003505 3.6e-13 78.2 83 60.2
FvH4_5g19060 Fragaria vesca HOM05D006762 ORTHO05D003505 1.4e-12 76.3 101 51.5
Sc09g0009340 Simmondsia chinensis HOM05D007429 ORTHO05D003505 2.4e-12 75.5 83 57.8
arahy.Tifrunner.gnm1.ann1.R0MHDP Arachis hypogaea HOM05D007429 ORTHO05D003505 3.1e-12 75.1 109 47.7
CARHR173910 Cardamine hirsuta HOM05D006762 ORTHO05D003505 3.1e-12 75.1 109 48.6
AUR62009266 Chenopodium quinoa HOM05D007429 ORTHO05D003505 3.1e-12 75.1 83 60.2
AUR62042440 Chenopodium quinoa HOM05D007429 ORTHO05D003505 3.1e-12 75.1 83 60.2
HanXRQChr02g0050601 Helianthus annuus HOM05D007429 ORTHO05D003505 4.0e-12 74.7 85 57.6
Lsat_1_v5_gn_6_22640 Lactuca sativa HOM05D007429 ORTHO05D003505 6.9e-12 73.9 82 54.9
Dinv27908 Davidia involucrata HOM05D007429 ORTHO05D003505 1.2e-11 73.2 84 57.1
CDE02G4418 Ceratophyllum demersum HOM05D007429 ORTHO05D003505 2.0e-11 72.4 81 53.1
PGR031G2035 Punica granatum HOM05D006762 ORTHO05D003505 2.0e-11 72.4 103 49.5
Glyma.05G060100 Glycine max HOM05D006762 ORTHO05D003505 3.4e-11 71.6 95 50.5
Hund14549 Selenicereus undatus HOM05D006762 ORTHO05D003505 4.4e-11 71.2 101 50.5
CiPaw.12G051800 Carya illinoinensis HOM05D006762 ORTHO05D003505 5.8e-11 70.9 107 45.8
Carub.0008s0032 Capsella rubella HOM05D006762 ORTHO05D003505 9.9e-11 70.1 106 47.2
ECA233G1441 Erigeron canadensis HOM05D007429 ORTHO05D003505 2.2e-10 68.9 84 51.2
SGA_v2.0_scaffold163G38070 Striga asiatica HOM05D007429 ORTHO05D003505 3.8e-10 68.2 122 42.6
Sopen08g027040 Solanum pennellii HOM05D006762 ORTHO05D003505 6.4e-10 67.4 103 43.7
CDE04G0746 Ceratophyllum demersum HOM05D007429 ORTHO05D003505 8.4e-10 67.0 84 51.2
AL7G37400 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 1.1e-09 66.6 89 51.7
Thecc.03G250100 Theobroma cacao HOM05D006762 ORTHO05D003505 1.1e-09 66.6 106 47.2
Migut.E01531 Erythranthe guttata HOM05D007429 ORTHO05D003505 1.9e-09 65.9 84 53.6
CSS0021998 Camellia sinensis var. sinensis HOM05D006762 ORTHO05D003505 4.2e-09 64.7 91 48.4
Ca_15587_v3 Cicer arietinum L. HOM05D002792 ORTHO05D003039 4.2e-09 64.7 47 70.2
TWI81G0572 Tripterygium wilfordii HOM05D006762 ORTHO05D003505 4.2e-09 64.7 81 51.9
Rhsim07G0109700 Rhododendron simsii HOM05D006762 ORTHO05D003505 5.4e-09 64.3 100 47.0
SalBow6G1716 Salvia bowleyana HOM05D006762 ORTHO05D003505 7.1e-09 63.9 99 47.5
BraA06t27376Z Brassica rapa HOM05D006762 ORTHO05D003505 1.2e-08 63.2 99 43.4
Glyma.17G142500 Glycine max HOM05D006762 ORTHO05D003505 1.6e-08 62.8 96 46.9
A06p45070 Brassica napus HOM05D006762 ORTHO05D003505 2.1e-08 62.4 98 43.9
Zm00001eb204980 Zea mays HOM05D007429 ORTHO05D003505 2.7e-08 62.0 93 47.3
BolC7t43652H Brassica oleracea HOM05D006762 ORTHO05D003505 3.5e-08 61.6 100 42.0
CDE04G0461 Ceratophyllum demersum HOM05D005822 ORTHO05D007267 3.5e-08 61.6 70 55.7
Lalb_Chr08g0243031 Lupinus albus HOM05D007429 ORTHO05D003505 3.5e-08 61.6 36 80.6
SalBow6G0204 Salvia bowleyana HOM05D006762 ORTHO05D003505 3.5e-08 61.6 98 46.9
VMungo1309G0862 Vigna mungo HOM05D007429 ORTHO05D003505 3.5e-08 61.6 36 83.3
BcaC06g31382 Brassica carinata HOM05D006762 ORTHO05D003505 4.6e-08 61.2 98 42.9
HanXRQChr03g0087771 Helianthus annuus HOM05D006762 ORTHO05D003505 4.6e-08 61.2 123 43.1
Lj8A263T41 Lonicera japonica HOM05D006762 ORTHO05D003505 4.6e-08 61.2 66 57.6
Potri.001G333800 Populus trichocarpa HOM05D006762 ORTHO05D003505 4.6e-08 61.2 93 44.1
BcaC06g31384 Brassica carinata HOM05D006762 ORTHO05D003505 6.0e-08 60.8 98 44.9
BcaC06g34251 Brassica carinata HOM05D006762 ORTHO05D003505 6.0e-08 60.8 99 42.4
C07p31100 Brassica napus HOM05D006762 ORTHO05D003505 6.0e-08 60.8 99 42.4
Thhalv10001082m.g Eutrema salsugineum HOM05D006762 ORTHO05D003505 7.8e-08 60.5 98 46.9
MD04G1063100 Malus domestica HOM05D006762 ORTHO05D003505 7.8e-08 60.5 92 48.9
Phvul.003G221200 Phaseolus vulgaris HOM05D006762 ORTHO05D003505 7.8e-08 60.5 85 45.9
Sed0021009 Sechium edule HOM05D006762 ORTHO05D003505 7.8e-08 60.5 91 46.2
FAN13G0097 Fragaria x ananassa HOM05D000502 ORTHO05D000356 1.0e-07 60.1 92 46.7
Cpa.g.sc29.168 Carica papaya HOM05D006762 ORTHO05D003505 1.3e-07 59.7 96 46.9
ECA240G1429 Erigeron canadensis HOM05D006762 ORTHO05D003505 1.3e-07 59.7 91 48.4
Manes.01G081200 Manihot esculenta HOM05D006762 ORTHO05D003505 1.3e-07 59.7 86 44.2
Nitab4.5_0001501g0020 Nicotiana tabacum HOM05D006762 ORTHO05D003505 1.3e-07 59.7 82 47.6
Oeu020431.1 Olea europaea HOM05D006762 ORTHO05D003505 1.3e-07 59.7 87 48.3
Sabra16G0215100 Salix brachista HOM05D006762 ORTHO05D003505 1.3e-07 59.7 94 42.6
MSTRG.12104 Avicennia marina HOM05D006762 ORTHO05D003505 1.7e-07 59.3 97 46.4
MBI01_g42895_MAGBIO Magnolia biondii HOM05D007429 ORTHO05D003505 1.7e-07 59.3 38 76.3
RcHm_v2.0_Chr7g0203511 Rosa chinensis HOM05D006762 ORTHO05D003505 1.7e-07 59.3 92 46.7
Sp2g12170 Schrenkiella parvula HOM05D006762 ORTHO05D003505 1.7e-07 59.3 98 44.9
ATR0317G117 Amborella trichopoda HOM05D006762 ORTHO05D003505 2.3e-07 58.9 97 43.3
Cfa013373 Carpinus fangiana HOM05D007429 ORTHO05D003505 2.3e-07 58.9 37 81.1
DCAR_000754 Daucus carota HOM05D002792 ORTHO05D003039 2.3e-07 58.9 36 77.8
A02p31340 Brassica napus HOM05D006762 ORTHO05D003505 3.0e-07 58.5 94 43.6
BraA02t08136Z Brassica rapa HOM05D006762 ORTHO05D003505 3.0e-07 58.5 94 43.6
Migut.A01106 Erythranthe guttata HOM05D006762 ORTHO05D003505 3.0e-07 58.5 97 44.3
BcaC03g16962 Brassica carinata HOM05D006762 ORTHO05D003505 3.9e-07 58.2 98 43.9
C02p48680 Brassica napus HOM05D006762 ORTHO05D003505 3.9e-07 58.2 98 43.9
BolC2t10960H Brassica oleracea HOM05D006762 ORTHO05D003505 3.9e-07 58.2 98 43.9
ClCG10G002600 Citrullus lanatus HOM05D006762 ORTHO05D003505 3.9e-07 58.2 86 47.7
Nitab4.5_0000882g0040 Nicotiana tabacum HOM05D006762 ORTHO05D003505 3.9e-07 58.2 95 45.3
AL8G10530 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 8.7e-07 57.0 96 41.7
MELO3C013933.2 Cucumis melo HOM05D006762 ORTHO05D003505 8.7e-07 57.0 79 49.4
Duzib205G1027 Durio zibethinus HOM05D006762 ORTHO05D003505 8.7e-07 57.0 102 39.2
FAN04G0434 Fragaria x ananassa HOM05D006762 ORTHO05D003505 8.7e-07 57.0 89 49.4
FAN08G1018 Fragaria x ananassa HOM05D006762 ORTHO05D003505 8.7e-07 57.0 89 49.4
FAN18G2762 Fragaria x ananassa HOM05D006762 ORTHO05D003505 8.7e-07 57.0 89 49.4
TAR629G0824 Trochodendron aralioides HOM05D006762 ORTHO05D003505 8.7e-07 57.0 99 46.5
Aa31csc22G110 Aethionema arabicum HOM05D006762 ORTHO05D003505 1.5e-06 56.2 57 56.1
AT5G47455 Arabidopsis thaliana HOM05D006762 ORTHO05D003505 1.5e-06 56.2 58 53.4
Ca_21971_v3 Cicer arietinum L. HOM05D006762 ORTHO05D003505 1.5e-06 56.2 87 42.5
Ciclev10023003m.g Citrus clementina HOM05D006762 ORTHO05D003505 1.5e-06 56.2 94 45.7
COL.COLO4_37166 Corchorus olitorius HOM05D006762 ORTHO05D003505 1.5e-06 56.2 98 42.9
CsaV3_3G002630 Cucumis sativus L. HOM05D006762 ORTHO05D003505 1.5e-06 56.2 79 49.4
Lsat_1_v5_gn_6_90840 Lactuca sativa HOM05D006762 ORTHO05D003505 1.5e-06 56.2 95 46.3
ATR0705G084 Amborella trichopoda HOM05D007429 ORTHO05D003505 2.5e-06 55.5 85 43.5
Gorai.004G198000 Gossypium raimondii HOM05D006762 ORTHO05D003505 2.5e-06 55.5 96 45.8
Lj4g0004620 Lotus japonicus HOM05D006762 ORTHO05D003505 2.5e-06 55.5 88 42.0
Potri.017G068600 Populus trichocarpa HOM05D006762 ORTHO05D003505 2.5e-06 55.5 96 41.7
CAN.G1058.38 Capsicum annuum HOM05D006762 ORTHO05D003505 3.3e-06 55.1 94 40.4
Dinv39153 Davidia involucrata HOM05D000502 ORTHO05D000356 3.3e-06 55.1 78 50.0
Lalb_Chr05g0226121 Lupinus albus HOM05D003477 ORTHO05D004043 3.3e-06 55.1 91 42.9
Lalb_Chr09g0330061 Lupinus albus HOM05D006762 ORTHO05D003505 3.3e-06 55.1 76 48.7
QL04p035820 Quercus lobata HOM05D006762 ORTHO05D003505 4.3e-06 54.7 91 46.2
TPR.G37627 Trifolium pratense HOM05D006762 ORTHO05D003505 4.3e-06 54.7 88 43.2
Cc08_g12340 Coffea canephora HOM05D006762 ORTHO05D003505 5.6e-06 54.3 99 42.4
Duzib084G1100 Durio zibethinus HOM05D006762 ORTHO05D003505 5.6e-06 54.3 83 44.6
Gohir.A08G169800 Gossypium hirsutum HOM05D006762 ORTHO05D003505 5.6e-06 54.3 95 43.2
Gohir.D08G188100 Gossypium hirsutum HOM05D006762 ORTHO05D003505 5.6e-06 54.3 95 43.2
QL06p040030 Quercus lobata HOM05D003477 ORTHO05D004043 5.6e-06 54.3 91 39.6
QL12p012005 Quercus lobata HOM05D006762 ORTHO05D003505 7.3e-06 53.9 91 45.1
TWI60G1284 Tripterygium wilfordii HOM05D006762 ORTHO05D003505 7.3e-06 53.9 69 47.8
Manes.02G040300 Manihot esculenta HOM05D006762 ORTHO05D003505 9.6e-06 53.5 96 40.6


User provided reference genes

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