Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g35150 Fragaria vesca HOM05D005768 ORTHO05D007100 3.0e-69 265.0 130 100.0
FAN27G1715 Fragaria x ananassa HOM05D005768 ORTHO05D007100 3.0e-61 238.4 119 99.2
FAN20G2834 Fragaria x ananassa HOM05D005768 ORTHO05D007100 1.1e-58 229.9 116 98.3
FAN15G1520 Fragaria x ananassa HOM05D005768 ORTHO05D007100 5.4e-58 227.6 116 96.6
RcHm_v2.0_Chr6g0306801 Rosa chinensis HOM05D005768 ORTHO05D007100 2.5e-55 218.8 119 90.8
Prupe.1G443600 Prunus persica HOM05D005768 ORTHO05D007100 9.5e-39 163.7 110 72.7
GSVIVG01035325001 Vitis vinifera HOM05D005768 ORTHO05D007100 5.4e-34 147.9 108 67.6
QL12p040865 Quercus lobata HOM05D005768 ORTHO05D007100 2.1e-33 146.0 112 66.1
Ciclev10022280m.g Citrus clementina HOM05D005768 ORTHO05D007100 6.0e-33 144.4 120 62.5
Gohir.D07G024000 Gossypium hirsutum HOM05D005768 ORTHO05D007100 1.3e-32 143.3 107 67.3
Gorai.001G024700 Gossypium raimondii HOM05D005768 ORTHO05D007100 1.3e-32 143.3 107 67.3
Atru.chr4.1221 Acer truncatum HOM05D005768 ORTHO05D007100 2.3e-32 142.5 113 62.8
Dinv27944 Davidia involucrata HOM05D005768 ORTHO05D007100 3.0e-32 142.1 106 63.2
Atru.chr7.2675 Acer truncatum HOM05D005768 ORTHO05D007100 5.1e-32 141.4 115 61.7
MD08G1109000 Malus domestica HOM05D005768 ORTHO05D007100 5.1e-32 141.4 115 67.0
Phvul.006G089400 Phaseolus vulgaris HOM05D005768 ORTHO05D007100 8.6e-32 140.6 113 60.2
Aqoxy5G03966 Aquilegia oxysepala HOM05D005768 ORTHO05D007100 4.3e-31 138.3 93 71.0
Glyma.19G233100 Glycine max HOM05D005768 ORTHO05D007100 1.6e-30 136.3 118 61.0
Thecc.09G049100 Theobroma cacao HOM05D005768 ORTHO05D007100 2.1e-30 136.0 107 64.5
Duzib168G0475 Durio zibethinus HOM05D005768 ORTHO05D007100 3.6e-30 135.2 109 62.4
Lj1g0020400 Lotus japonicus HOM05D005768 ORTHO05D007100 4.7e-30 134.8 109 61.5
Psat0s1830g0160 Pisum sativum HOM05D005768 ORTHO05D007100 4.7e-30 134.8 105 61.9
TPR.G33208 Trifolium pratense HOM05D005768 ORTHO05D007100 6.2e-30 134.4 105 61.0
Hma1.2p1_0442F.1_g153950 Hydrangea macrophylla HOM05D005768 ORTHO05D007100 1.4e-29 133.3 102 61.8
PSO063G0290 Papaver somniferum HOM05D005768 ORTHO05D007100 1.4e-29 133.3 115 61.7
PSO832G3354 Papaver somniferum HOM05D005768 ORTHO05D007100 1.8e-29 132.9 117 62.4
Ca_05797_v3 Cicer arietinum L. HOM05D001134 ORTHO05D001035 2.3e-29 132.5 94 66.0
Manes.02G043100 Manihot esculenta HOM05D005768 ORTHO05D007100 2.3e-29 132.5 90 66.7
CSS0002565 Camellia sinensis var. sinensis HOM05D005768 ORTHO05D007100 3.1e-29 132.1 111 60.4
Hma1.2p1_0603F.1_g187720 Hydrangea macrophylla HOM05D005768 ORTHO05D007100 3.1e-29 132.1 83 72.3
CiPaw.07G201500 Carya illinoinensis HOM05D005768 ORTHO05D007100 6.8e-29 131.0 100 66.0
PSO832G1534 Papaver somniferum HOM05D005768 ORTHO05D007100 6.8e-29 131.0 108 62.0
PSO063G4631 Papaver somniferum HOM05D005768 ORTHO05D007100 8.9e-29 130.6 115 60.9
Psat0s1830g0280 Pisum sativum HOM05D005768 ORTHO05D007100 8.9e-29 130.6 105 58.1
TPR.G29192 Trifolium pratense HOM05D005768 ORTHO05D007100 2.0e-28 129.4 90 67.8
Nn6g34840 Nelumbo nucifera HOM05D005768 ORTHO05D007100 2.6e-28 129.0 102 64.7
Oeu033885.1 Olea europaea HOM05D005768 ORTHO05D007100 2.6e-28 129.0 89 67.4
Eucgr.C02988 Eucalyptus grandis HOM05D005768 ORTHO05D007100 3.4e-28 128.6 87 69.0
TWI63G1351 Tripterygium wilfordii HOM05D005768 ORTHO05D007100 4.4e-28 128.3 98 63.3
TAR624G0371 Trochodendron aralioides HOM05D005768 ORTHO05D007100 5.8e-28 127.9 108 63.0
Cpa.g.sc1868.1 Carica papaya HOM05D005768 ORTHO05D007100 9.9e-28 127.1 89 69.7
TWI34G0524 Tripterygium wilfordii HOM05D005768 ORTHO05D007100 1.3e-27 126.7 81 74.1
EL10Ac5g12654 Beta vulgaris HOM05D005768 ORTHO05D007100 1.7e-27 126.3 93 67.7
Lj7A696G17 Lonicera japonica HOM05D005768 ORTHO05D007100 1.7e-27 126.3 107 62.6
Rhsim07G0145000 Rhododendron simsii HOM05D005768 ORTHO05D007100 1.7e-27 126.3 113 56.6
Ah.02g116310 Amaranthus hybridus HOM05D005768 ORTHO05D007100 2.9e-27 125.6 96 63.5
Lalb_Chr08g0242881 Lupinus albus HOM05D005768 ORTHO05D007100 2.9e-27 125.6 105 55.2
Actinidia18208 Actinidia chinensis HOM05D005768 ORTHO05D007100 3.7e-27 125.2 120 58.3
COL.COLO4_21009 Corchorus olitorius HOM05D005768 ORTHO05D007100 3.7e-27 125.2 109 58.7
CANSAT56G2391 Cannabis sativa HOM05D005768 ORTHO05D007100 4.9e-27 124.8 110 61.8
MELO3C003477.2 Cucumis melo HOM05D005768 ORTHO05D007100 4.9e-27 124.8 92 69.6
PSO063G1479 Papaver somniferum HOM05D005768 ORTHO05D007100 6.4e-27 124.4 109 62.4
PSO063G2632 Papaver somniferum HOM05D005768 ORTHO05D007100 6.4e-27 124.4 109 62.4
PSO063G5891 Papaver somniferum HOM05D005768 ORTHO05D007100 6.4e-27 124.4 109 62.4
vmacro07473 Vaccinium macrocarpon HOM05D005768 ORTHO05D007100 6.4e-27 124.4 104 57.7
PGR044G0118 Punica granatum HOM05D005768 ORTHO05D007100 8.3e-27 124.0 97 63.9
HanXRQChr03g0078001 Helianthus annuus HOM05D005768 ORTHO05D007100 1.9e-26 122.9 85 68.2
Lalb_Chr24g0397251 Lupinus albus HOM05D005768 ORTHO05D007100 1.9e-26 122.9 112 54.5
TAR383G0888 Trochodendron aralioides HOM05D005768 ORTHO05D007100 2.4e-26 122.5 81 75.3
Aqoxy7G01356 Aquilegia oxysepala HOM05D005768 ORTHO05D007100 3.2e-26 122.1 111 58.6
Medtr7g112710 Medicago truncatula HOM05D005768 ORTHO05D007100 4.1e-26 121.7 83 68.7
Sc09g0009490 Simmondsia chinensis HOM05D005768 ORTHO05D007100 4.1e-26 121.7 89 67.4
AUR62017359 Chenopodium quinoa HOM05D005768 ORTHO05D007100 5.4e-26 121.3 93 62.4
CsaV3_3G048420 Cucumis sativus L. HOM05D005768 ORTHO05D007100 1.6e-25 119.8 104 56.7
Sed0000338 Sechium edule HOM05D005768 ORTHO05D007100 1.6e-25 119.8 114 57.0
Sed0022019 Sechium edule HOM05D005768 ORTHO05D007100 1.6e-25 119.8 86 67.4
Sp1g18590 Schrenkiella parvula HOM05D005768 ORTHO05D007100 2.7e-25 119.0 121 53.7
THA.LOC104812009 Tarenaya hassleriana HOM05D005768 ORTHO05D007100 3.5e-25 118.6 97 62.9
BcaB07g32084 Brassica carinata HOM05D005768 ORTHO05D007100 6.0e-25 117.9 93 64.5
ClCG02G014210 Citrullus lanatus HOM05D005768 ORTHO05D007100 6.0e-25 117.9 103 55.3
ECA234G0765 Erigeron canadensis HOM05D000185 ORTHO05D000105 7.8e-25 117.5 90 61.1
BolC7t42805H Brassica oleracea HOM05D005768 ORTHO05D007100 1.3e-24 116.7 93 62.4
CARHR021320 Cardamine hirsuta HOM05D005768 ORTHO05D007100 1.3e-24 116.7 94 60.6
SalBow6G5216 Salvia bowleyana HOM05D005768 ORTHO05D007100 1.3e-24 116.7 81 66.7
C07p22730 Brassica napus HOM05D005768 ORTHO05D007100 2.3e-24 115.9 93 62.4
Cc00_g09250 Coffea canephora HOM05D005768 ORTHO05D007100 3.0e-24 115.5 93 59.1
Hund19578 Selenicereus undatus HOM05D005768 ORTHO05D007100 3.0e-24 115.5 85 64.7
AT1G76480 Arabidopsis thaliana HOM05D005768 ORTHO05D007100 3.9e-24 115.2 89 62.9
AUR62010536 Chenopodium quinoa HOM05D005768 ORTHO05D007100 6.6e-24 114.4 85 63.5
Migut.A00171 Erythranthe guttata HOM05D005768 ORTHO05D007100 6.6e-24 114.4 99 56.6
BcaB03g14295 Brassica carinata HOM05D005768 ORTHO05D007100 8.6e-24 114.0 104 56.7
BcaC06g34845 Brassica carinata HOM05D005768 ORTHO05D007100 1.1e-23 113.6 87 64.4
A07p15420 Brassica napus HOM05D005768 ORTHO05D007100 1.1e-23 113.6 87 64.4
Sabra06G0183200 Salix brachista HOM05D005768 ORTHO05D007100 1.1e-23 113.6 120 54.2
MSTRG.25924 Avicennia marina HOM05D005768 ORTHO05D007100 1.5e-23 113.2 91 58.2
Thhalv10008823m.g Eutrema salsugineum HOM05D005768 ORTHO05D007100 1.5e-23 113.2 88 64.8
Potri.006G234800 Populus trichocarpa HOM05D005768 ORTHO05D007100 4.3e-23 111.7 81 65.4
arahy.Tifrunner.gnm1.ann1.FJ9VJT Arachis hypogaea HOM05D005768 ORTHO05D007100 5.6e-23 111.3 125 49.6
Aa31LG7G5050 Aethionema arabicum HOM05D005768 ORTHO05D007100 7.3e-23 110.9 113 53.1
Lsat_1_v5_gn_3_56860 Lactuca sativa HOM05D005768 ORTHO05D007100 7.3e-23 110.9 80 63.8
AL1G33910 Arabidopsis lyrata HOM05D005768 ORTHO05D007100 1.6e-22 109.8 89 60.7
Sopen08g019690 Solanum pennellii HOM05D005768 ORTHO05D007100 1.6e-22 109.8 111 49.5
AT1G20890 Arabidopsis thaliana HOM05D005768 ORTHO05D007100 2.1e-22 109.4 85 62.4
A06p16890 Brassica napus HOM05D005768 ORTHO05D007100 2.1e-22 109.4 89 62.9
Carub.0001s2036 Capsella rubella HOM05D005768 ORTHO05D007100 2.1e-22 109.4 113 53.1
unitig_0.g2567 Utricularia gibba HOM05D005768 ORTHO05D007100 2.1e-22 109.4 85 55.3
BraA06t24798Z Brassica rapa HOM05D005768 ORTHO05D007100 2.8e-22 109.0 93 61.3
HPP92_009604 Vanilla planifolia HOM05D005768 ORTHO05D007100 1.1e-21 107.1 115 49.6
Solyc08g066030.3 Solanum lycopersicum HOM05D005768 ORTHO05D007100 1.8e-21 106.3 111 49.5
Gohir.A07G022184 Gossypium hirsutum HOM05D005768 ORTHO05D007100 3.1e-21 105.5 69 75.4
vmacro05269 Vaccinium macrocarpon HOM05D005768 ORTHO05D007100 6.8e-21 104.4 79 64.6
C05p19520 Brassica napus HOM05D005768 ORTHO05D007100 1.5e-20 103.2 86 61.6
BolC5t30654H Brassica oleracea HOM05D005768 ORTHO05D007100 1.5e-20 103.2 86 61.6
Os03g0804100 Oryza sativa ssp. japonica HOM05D005768 ORTHO05D007100 1.5e-20 103.2 89 60.7
PGSC0003DMG401025462 Solanum tuberosum HOM05D005768 ORTHO05D007100 2.0e-20 102.8 85 58.8
Haze_01966 Corylus avellana HOM05D005768 ORTHO05D007100 3.4e-20 102.1 62 74.2
SEGI_27706 Sequoiadendron giganteum HOM05D005768 ORTHO05D007100 3.4e-20 102.1 79 62.0
SGA_v2.0_scaffold103G30048 Striga asiatica HOM05D005768 ORTHO05D007100 2.9e-19 99.0 71 66.2
Zm00001eb061390 Zea mays HOM05D005768 ORTHO05D007100 2.9e-19 99.0 113 48.7
Os08g0374900 Oryza sativa ssp. japonica HOM05D005768 ORTHO05D007100 1.1e-18 97.1 85 60.0
HanXRQChr14g0439211 Helianthus annuus HOM05D005768 ORTHO05D007100 9.2e-18 94.0 86 57.0
MBI02_g46884_MAGBIO Magnolia biondii HOM05D000614 ORTHO05D007100 1.2e-17 93.6 85 57.6
Nitab4.5_0000318g0060 Nicotiana tabacum HOM05D005768 ORTHO05D007100 2.7e-17 92.4 72 59.7
PSO832G4156 Papaver somniferum HOM05D005768 ORTHO05D007100 7.8e-17 90.9 67 68.7
Thhalv10019630m.g Eutrema salsugineum HOM05D005768 ORTHO05D007100 6.6e-16 87.8 67 64.2
Peaxi162Scf00699g00655 Petunia axillaris HOM05D005768 ORTHO05D007100 1.9e-15 86.3 69 58.0
SalBow4G3076 Salvia bowleyana HOM05D005768 ORTHO05D007100 1.3e-14 83.6 57 63.2
AL2G36620 Arabidopsis lyrata HOM05D005768 ORTHO05D007100 2.8e-14 82.4 92 48.9
Nitab4.5_0002021g0070 Nicotiana tabacum HOM05D005768 ORTHO05D007100 4.0e-13 78.6 67 53.7
MBI02_g46987_MAGBIO Magnolia biondii HOM05D005768 ORTHO05D007100 3.4e-12 75.5 51 70.6
Oeu002722.1 Olea europaea HOM05D005768 ORTHO05D007100 3.4e-12 75.5 44 77.3
Pp3c24_1520 Physcomitrium patens HOM05D005768 ORTHO05D007100 5.8e-12 74.7 117 41.0
Mapoly0062s0068 Marchantia polymorpha HOM05D005768 ORTHO05D007100 1.7e-11 73.2 110 40.0
SEGI_03586 Sequoiadendron giganteum HOM05D005768 ORTHO05D007100 6.4e-11 71.2 44 72.7
CBR_g130 Chara braunii HOM05D000019 ORTHO05D000002 6.0e-09 64.7 86 37.2
ATR0693G003 Amborella trichopoda HOM05D005768 ORTHO05D007100 5.1e-08 61.6 80 43.8
Sc09g0009520 Simmondsia chinensis HOM05D005768 ORTHO05D007100 5.1e-08 61.6 43 65.1
BcaC05g25998 Brassica carinata HOM05D005768 ORTHO05D007100 1.9e-07 59.7 48 56.2
Cre12.g547734 Chlamydomonas reinhardtii HOM05D005768 ORTHO05D007100 7.3e-07 57.8 77 41.6
Glyma.03G235400 Glycine max HOM05D005768 ORTHO05D007100 1.3e-06 57.0 59 52.5


User provided reference genes

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