Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g35140 Fragaria vesca HOM05D006132 ORTHO05D007305 0.0e+00 3887.0 1968 100.0
RcHm_v2.0_Chr6g0306811 Rosa chinensis HOM05D006132 ORTHO05D007305 0.0e+00 3583.5 1993 91.7
Prupe.1G443500 Prunus persica HOM05D006132 ORTHO05D007305 0.0e+00 3116.6 1903 83.8
MD08G1108900 Malus domestica HOM05D006132 ORTHO05D007305 0.0e+00 3088.9 1996 79.8
QL12p040855 Quercus lobata HOM05D006132 ORTHO05D007305 0.0e+00 2651.3 1993 70.0
CiPaw.07G201400 Carya illinoinensis HOM05D006132 ORTHO05D007305 0.0e+00 2634.4 1984 69.5
Haze_01967 Corylus avellana HOM05D006132 ORTHO05D007305 0.0e+00 2600.1 1999 69.4
Atru.chr7.2044 Acer truncatum HOM05D006132 ORTHO05D007305 0.0e+00 2520.3 1985 67.0
Thecc.09G049200 Theobroma cacao HOM05D006132 ORTHO05D007305 0.0e+00 2502.2 2001 66.5
GSVIVG01035326001 Vitis vinifera HOM05D006132 ORTHO05D007305 0.0e+00 2500.7 1982 66.6
Dinv23402 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 2497.2 1944 67.7
Ciclev10010526m.g Citrus clementina HOM05D006132 ORTHO05D007305 0.0e+00 2482.6 1955 67.3
FAN20G0110 Fragaria x ananassa HOM05D006132 ORTHO05D007305 0.0e+00 2474.5 1322 95.4
Manes.03G057600 Manihot esculenta HOM05D006132 ORTHO05D007305 0.0e+00 2473.4 1995 66.5
Potri.018G057900 Populus trichocarpa HOM05D006132 ORTHO05D007305 0.0e+00 2456.4 1985 66.7
TAR636G1718 Trochodendron aralioides HOM05D006132 ORTHO05D007305 0.0e+00 2441.4 2067 63.3
Gorai.001G024600 Gossypium raimondii HOM05D006132 ORTHO05D007305 0.0e+00 2437.9 1990 65.0
Duzib168G1248 Durio zibethinus HOM05D006132 ORTHO05D007305 0.0e+00 2415.2 1997 64.8
COL.COLO4_21010 Corchorus olitorius HOM05D006132 ORTHO05D007305 0.0e+00 2413.6 1969 65.4
Glyma.06G088900 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 2378.6 1971 63.9
Glyma.04G087200 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 2375.1 1974 63.8
TWI34G0160 Tripterygium wilfordii HOM05D006132 ORTHO05D007305 0.0e+00 2369.3 1991 63.8
Dinv02537 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 2363.2 1866 67.0
Ca_15565_v3 Cicer arietinum L. HOM05D006132 ORTHO05D007305 0.0e+00 2357.4 1973 63.5
Nn8g39007 Nelumbo nucifera HOM05D006132 ORTHO05D007305 0.0e+00 2351.6 2059 61.3
Gohir.D07G023900 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 2351.2 1898 65.6
Lalb_Chr08g0242871 Lupinus albus HOM05D006132 ORTHO05D007305 0.0e+00 2350.9 1977 63.4
Sed0028022 Sechium edule HOM05D006132 ORTHO05D007305 0.0e+00 2340.1 1994 62.8
Medtr3g110417 Medicago truncatula HOM05D006132 ORTHO05D007305 0.0e+00 2339.7 1974 63.1
Lj8C561G12 Lonicera japonica HOM05D006132 ORTHO05D007305 0.0e+00 2326.6 1895 64.3
Lj1g0008631 Lotus japonicus HOM05D006132 ORTHO05D007305 0.0e+00 2317.0 1968 62.4
MELO3C003478.2 Cucumis melo HOM05D006132 ORTHO05D007305 0.0e+00 2302.3 1983 62.6
Psat0s3156g0040 Pisum sativum HOM05D006132 ORTHO05D007305 0.0e+00 2299.2 1972 62.2
CsaV3_3G048410 Cucumis sativus L. HOM05D006132 ORTHO05D007305 0.0e+00 2298.5 1989 62.3
vmacro00180 Vaccinium macrocarpon HOM05D006132 ORTHO05D007305 0.0e+00 2298.5 2026 61.6
Phvul.009G112700 Phaseolus vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 2293.1 1964 62.6
VMungo1309G3161 Vigna mungo HOM05D006132 ORTHO05D007305 0.0e+00 2287.3 1971 62.0
ClCG11G015000 Citrullus lanatus HOM05D006132 ORTHO05D007305 0.0e+00 2261.5 2016 61.4
TPR.G12374 Trifolium pratense HOM05D006132 ORTHO05D007305 0.0e+00 2260.3 1991 61.6
arahy.Tifrunner.gnm1.ann1.GM174E Arachis hypogaea HOM05D006132 ORTHO05D007305 0.0e+00 2252.2 2112 58.9
Cc08_g10020 Coffea canephora HOM05D006132 ORTHO05D007305 0.0e+00 2219.5 1987 59.7
Gohir.A07G022180 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 2214.5 1862 63.6
PGR031G1631 Punica granatum HOM05D006132 ORTHO05D007305 0.0e+00 2213.7 1958 61.0
Sc09g0009530 Simmondsia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 2203.7 2014 59.2
Aqoxy7G03955 Aquilegia oxysepala HOM05D006132 ORTHO05D007305 0.0e+00 2201.8 2061 59.2
arahy.Tifrunner.gnm1.ann1.XPLI6K Arachis hypogaea HOM05D006132 ORTHO05D007305 0.0e+00 2186.0 1964 60.4
Sopen08g019670 Solanum pennellii HOM05D006132 ORTHO05D007305 0.0e+00 2147.9 1958 58.8
MSTRG.25925 Avicennia marina HOM05D006132 ORTHO05D007305 0.0e+00 2138.6 2000 57.2
MBI01_g01249_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 0.0e+00 2132.5 2028 57.5
PSO210G7354 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 2128.6 2050 57.5
CAN.G9.6 Capsicum annuum HOM05D006132 ORTHO05D007305 0.0e+00 2127.1 1958 58.4
AUR62040212 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 2124.0 1998 57.4
Migut.A00170 Erythranthe guttata HOM05D006132 ORTHO05D007305 0.0e+00 2119.7 1972 57.7
PSO210G2191 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 2115.5 1963 58.6
AUR62009214 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 2099.3 2004 57.2
THA.LOC104818581 Tarenaya hassleriana HOM05D006132 ORTHO05D007305 0.0e+00 2097.8 1996 58.4
ECA240G1625 Erigeron canadensis HOM05D006132 ORTHO05D007305 0.0e+00 2062.3 2023 56.8
Thhalv10026823m.g Eutrema salsugineum HOM05D006132 ORTHO05D007305 0.0e+00 2060.4 1907 58.3
Eucgr.C00619 Eucalyptus grandis HOM05D006132 ORTHO05D007305 0.0e+00 2059.3 1877 59.4
DCAR_007699 Daucus carota HOM05D006132 ORTHO05D007305 0.0e+00 2056.2 1946 57.5
Rhsim11G0049000 Rhododendron simsii HOM05D006132 ORTHO05D007305 0.0e+00 2054.3 1963 57.7
AT4G32820 Arabidopsis thaliana HOM05D006132 ORTHO05D007305 0.0e+00 2052.7 1944 57.1
Ah.11g044450 Amaranthus hybridus HOM05D006132 ORTHO05D007305 0.0e+00 2051.9 1972 56.1
Carub.0007s0767 Capsella rubella HOM05D006132 ORTHO05D007305 0.0e+00 2046.2 1921 57.7
AL7G18910 Arabidopsis lyrata HOM05D006132 ORTHO05D007305 0.0e+00 2042.3 1940 57.1
Lsat_1_v5_gn_3_109020 Lactuca sativa HOM05D006132 ORTHO05D007305 0.0e+00 2036.2 1995 56.6
Sp7g30590 Schrenkiella parvula HOM05D006132 ORTHO05D007305 0.0e+00 2036.2 1909 57.5
BcaC09g52078 Brassica carinata HOM05D006132 ORTHO05D007305 0.0e+00 2030.8 1912 57.3
C01p06070 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 2026.9 1914 57.0
HanXRQChr03g0077991 Helianthus annuus HOM05D006132 ORTHO05D007305 0.0e+00 2023.1 1950 56.5
Oeu038827.1 Olea europaea HOM05D006132 ORTHO05D007305 0.0e+00 2021.1 1944 56.4
SalBow4G1475 Salvia bowleyana HOM05D006132 ORTHO05D007305 0.0e+00 2020.7 1955 56.3
A01p05470 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 2013.8 1935 56.5
EL10Ac2g03960 Beta vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 2010.0 2125 52.8
BraA01t00520Z Brassica rapa HOM05D006132 ORTHO05D007305 0.0e+00 2001.5 1964 55.8
BolC1t00600H Brassica oleracea HOM05D006132 ORTHO05D007305 0.0e+00 1998.8 1945 56.2
Hund19486 Selenicereus undatus HOM05D006132 ORTHO05D007305 0.0e+00 1968.0 1985 55.3
Nitab4.5_0000318g0080 Nicotiana tabacum HOM05D006132 ORTHO05D007305 0.0e+00 1954.9 1946 55.7
Aa31sc208G40 Aethionema arabicum HOM05D006132 ORTHO05D007305 0.0e+00 1944.9 1909 55.8
SGA_v2.0_scaffold103G30057 Striga asiatica HOM05D006132 ORTHO05D007305 0.0e+00 1941.0 1985 54.8
Aa31LG5G17300 Aethionema arabicum HOM05D006132 ORTHO05D007305 0.0e+00 1930.6 1924 55.1
Actinidia01213 Actinidia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 1897.9 1912 56.5
ATR0815G026 Amborella trichopoda HOM05D006132 ORTHO05D007305 0.0e+00 1860.1 2124 50.0
Cpa.g.sc7.235 Carica papaya HOM05D006132 ORTHO05D007305 0.0e+00 1716.0 1603 58.8
Solyc08g066010.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 0.0e+00 1666.0 1542 59.0
HPP92_019594 Vanilla planifolia HOM05D006132 ORTHO05D007305 0.0e+00 1566.6 1778 49.7
unitig_0.g2566 Utricularia gibba HOM05D006132 ORTHO05D007305 0.0e+00 1440.6 1943 44.7
CSS0000087 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 0.0e+00 1389.8 1085 66.1
Pp3c4_1880 Physcomitrium patens HOM05D006132 ORTHO05D007305 0.0e+00 1255.7 2205 38.0
Mapoly0021s0014 Marchantia polymorpha HOM05D006132 ORTHO05D007305 0.0e+00 1191.0 2194 36.6
SMO365G0056 Selaginella moellendorffii HOM05D006132 ORTHO05D007305 0.0e+00 1188.7 1936 38.3
AagrBONN_evm.TU.Sc2ySwM_344.875 Anthoceros agrestis HOM05D006132 ORTHO05D007305 0.0e+00 1076.2 2181 35.1
CSS0048337 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 2.7e-294 1016.5 794 67.1
Nitab4.5_0002021g0060 Nicotiana tabacum HOM05D006132 ORTHO05D007305 3.6e-246 856.7 1394 40.9
CARHR240810 Cardamine hirsuta HOM05D006132 ORTHO05D007305 1.3e-243 848.2 709 62.9
CSS0029204 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 9.1e-242 842.0 800 59.1
SHI18807 Sapria himalayana HOM05D006132 ORTHO05D007305 3.8e-240 836.6 1128 44.2
Peaxi162Scf00840g00429 Petunia axillaris HOM05D006132 ORTHO05D007305 7.2e-239 832.4 796 57.5
CBR_g22939 Chara braunii HOM05D006132 ORTHO05D000048 2.8e-227 793.9 2098 30.4
Psat4g077080 Pisum sativum HOM05D006132 ORTHO05D007305 1.2e-217 761.9 758 55.9
Psat4g077000 Pisum sativum HOM05D006132 ORTHO05D007305 8.6e-200 702.6 741 54.1
SHI18802 Sapria himalayana HOM05D006132 ORTHO05D007305 7.1e-186 656.4 798 49.2
Solyc08g066000.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 1.5e-132 479.2 423 57.2
Peaxi162Scf00840g00428 Petunia axillaris HOM05D006132 ORTHO05D007305 2.9e-123 448.4 358 62.0
TAR636G0297 Trochodendron aralioides HOM05D006132 ORTHO05D007305 7.5e-87 327.4 496 44.2
TAR636G2276 Trochodendron aralioides HOM05D006132 ORTHO05D007305 1.1e-85 323.6 267 64.4
Psat2g119040 Pisum sativum HOM05D006132 ORTHO05D007305 6.0e-76 291.2 220 66.8
CSS0021543 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 3.3e-66 258.8 217 59.4
Zm00001eb053280 Zea mays HOM05D006132 ORTHO05D007305 2.7e-60 239.2 305 44.3
Lsat_1_v5_gn_0_25341 Lactuca sativa HOM05D006132 ORTHO05D007305 9.6e-58 230.7 269 46.8
SHI18803 Sapria himalayana HOM05D006132 ORTHO05D007305 1.1e-56 227.3 298 47.3
Cpa.g.sc7.234 Carica papaya HOM05D006132 ORTHO05D007305 4.6e-52 211.8 124 83.9
Carub.0003s0455 Capsella rubella HOM05D006132 ORTHO05D007305 1.8e-40 173.3 244 42.2
Zm00001eb053310 Zea mays HOM05D006132 ORTHO05D007305 4.2e-37 162.2 272 41.5
Zm00001eb053300 Zea mays HOM05D006132 ORTHO05D007305 3.1e-32 146.0 121 62.0
Glyma.18G112500 Glycine max HOM05D006132 ORTHO05D007305 7.9e-28 131.3 80 82.5
MBI04_g05153_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 1.3e-27 130.6 127 51.2
MD08G1109200 Malus domestica HOM05D006132 ORTHO05D007305 1.1e-18 100.9 71 70.4
Os03g0685750 Oryza sativa ssp. japonica HOM05D006132 ORTHO05D007305 2.6e-18 99.8 137 43.8
Zm00001eb053290 Zea mays HOM05D006132 ORTHO05D007305 8.2e-17 94.7 69 63.8
Sabra06G0183100 Salix brachista HOM05D006132 ORTHO05D007305 1.1e-16 94.4 122 53.3
CiPaw.04G074200 Carya illinoinensis HOM05D006132 ORTHO05D007305 9.1e-16 91.3 61 72.1
MCO10G298 Micromonas commoda HOM05D006132 ORTHO05D007305 7.7e-15 88.2 429 24.5
Glyma.11G174000 Glycine max HOM05D006132 ORTHO05D007305 1.4e-13 84.0 66 54.5
CDE12G0288 Ceratophyllum demersum HOM05D004517 ORTHO05D005366 7.2e-13 81.6 58 70.7
Phvul.003G090001 Phaseolus vulgaris HOM05D006132 ORTHO05D007305 2.6e-10 73.2 119 41.2
Psat3g153160 Pisum sativum HOM05D006816 ORTHO05D008517 4.8e-09 68.9 78 46.2
MBI04_g44310_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 1.1e-08 67.8 69 47.8
Psat3g171600 Pisum sativum HOM05D006132 ORTHO05D007305 1.1e-08 67.8 90 44.4
SMO351G0355 Selaginella moellendorffii HOM05D023170 ORTHO05D007305 7.0e-08 65.1 71 53.5


User provided reference genes

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