Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g35070 Fragaria vesca HOM05D004101 ORTHO05D005221 0.0e+00 1921.4 934 100.0
FAN27G2707 Fragaria x ananassa HOM05D004101 ORTHO05D005221 0.0e+00 1859.7 932 97.7
FAN20G0554 Fragaria x ananassa HOM05D004101 ORTHO05D005221 0.0e+00 1744.2 928 92.2
FAN15G3699 Fragaria x ananassa HOM05D004101 ORTHO05D005221 0.0e+00 1677.5 923 89.9
RcHm_v2.0_Chr6g0306901 Rosa chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1661.7 933 88.0
MD15G1088500 Malus domestica HOM05D004101 ORTHO05D005221 0.0e+00 1448.3 930 78.0
Prupe.1G442600 Prunus persica HOM05D004101 ORTHO05D005221 0.0e+00 1434.5 930 77.0
MD08G1108000 Malus domestica HOM05D004101 ORTHO05D005221 0.0e+00 1406.7 940 75.4
Cfa008084 Carpinus fangiana HOM05D004101 ORTHO05D005221 0.0e+00 1314.7 924 71.6
QL09p002038 Quercus lobata HOM05D004101 ORTHO05D005221 0.0e+00 1312.7 926 70.8
CiPaw.03G015400 Carya illinoinensis HOM05D004101 ORTHO05D005221 0.0e+00 1289.6 932 70.3
Atru.chr13.2487 Acer truncatum HOM05D004101 ORTHO05D005221 0.0e+00 1267.3 928 69.6
Ciclev10018750m.g Citrus clementina HOM05D004101 ORTHO05D005221 0.0e+00 1253.0 921 69.6
Dinv05108 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1252.7 939 67.1
Potri.013G099700 Populus trichocarpa HOM05D004101 ORTHO05D005221 0.0e+00 1251.5 929 69.2
Dinv36168 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1245.7 937 67.7
Thecc.08G177600 Theobroma cacao HOM05D004101 ORTHO05D005221 0.0e+00 1238.8 933 68.5
GSVIVG01036377001 Vitis vinifera HOM05D004101 ORTHO05D005221 0.0e+00 1233.4 933 67.4
Potri.019G072300 Populus trichocarpa HOM05D004101 ORTHO05D005221 0.0e+00 1232.2 937 67.6
TAR383G0434 Trochodendron aralioides HOM05D004101 ORTHO05D005221 0.0e+00 1232.2 944 67.3
CSS0023016 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1231.9 931 67.5
Manes.02G221381 Manihot esculenta HOM05D004101 ORTHO05D005221 0.0e+00 1230.7 940 67.0
Manes.18G117901 Manihot esculenta HOM05D004101 ORTHO05D005221 0.0e+00 1224.2 955 67.4
TAR625G0099 Trochodendron aralioides HOM05D004101 ORTHO05D005221 0.0e+00 1224.2 948 66.8
Actinidia29382 Actinidia chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1218.8 937 66.9
TWI18G0503 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1213.4 926 67.4
CSS0032109 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1212.6 930 67.5
Gohir.A05G253700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1208.7 932 67.8
Gorai.009G267200 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1208.0 927 67.9
Haze_13953 Corylus avellana HOM05D004101 ORTHO05D005221 0.0e+00 1203.3 1027 62.4
CANSAT78G1092 Cannabis sativa HOM05D004101 ORTHO05D005221 0.0e+00 1203.0 954 64.9
Gohir.A02G087700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1199.9 930 67.8
TWI12G0255 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1199.1 926 67.1
Gorai.005G116600 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1198.7 929 67.7
Duzib177G1024 Durio zibethinus HOM05D004101 ORTHO05D005221 0.0e+00 1194.9 981 64.4
CANSAT21G1017 Cannabis sativa HOM05D004101 ORTHO05D005221 0.0e+00 1187.6 890 66.6
arahy.Tifrunner.gnm1.ann1.BP0NKM Arachis hypogaea HOM05D004101 ORTHO05D005221 0.0e+00 1185.2 939 65.4
Glyma.09G234500 Glycine max HOM05D004101 ORTHO05D005221 0.0e+00 1178.3 923 65.9
Phvul.011G002700 Phaseolus vulgaris HOM05D004101 ORTHO05D005221 0.0e+00 1174.5 931 65.7
VMungo1127G2207 Vigna mungo HOM05D004101 ORTHO05D005221 0.0e+00 1174.5 931 65.5
Nn5g27278 Nelumbo nucifera HOM05D004101 ORTHO05D005221 0.0e+00 1172.9 928 64.5
Sed0018643 Sechium edule HOM05D004101 ORTHO05D005221 0.0e+00 1171.0 937 64.8
PGR042G3616 Punica granatum HOM05D004101 ORTHO05D005221 0.0e+00 1162.5 949 64.6
Psat7g146680 Pisum sativum HOM05D004101 ORTHO05D005221 0.0e+00 1159.1 923 65.1
Sabra13G0085500 Salix brachista HOM05D004101 ORTHO05D005221 0.0e+00 1157.9 1018 61.8
Solyc01g008320.3 Solanum lycopersicum HOM05D004101 ORTHO05D005221 0.0e+00 1154.8 939 62.9
CsaV3_2G033160 Cucumis sativus L. HOM05D004101 ORTHO05D005221 0.0e+00 1152.9 921 64.2
Lalb_Chr16g0391261 Lupinus albus HOM05D004101 ORTHO05D005221 0.0e+00 1152.1 927 64.9
Oeu028926.1 Olea europaea HOM05D004101 ORTHO05D005221 0.0e+00 1149.0 927 63.4
arahy.Tifrunner.gnm1.ann1.FM3HJM Arachis hypogaea HOM05D004101 ORTHO05D005221 0.0e+00 1148.3 1028 59.7
Medtr4g033490 Medicago truncatula HOM05D004101 ORTHO05D005221 0.0e+00 1147.9 932 64.2
Ca_19680_v3 Cicer arietinum L. HOM05D004101 ORTHO05D005221 0.0e+00 1145.6 922 64.6
Sopen01g003840 Solanum pennellii HOM05D004101 ORTHO05D005221 0.0e+00 1144.8 939 62.4
Lj3g0009901 Lotus japonicus HOM05D004101 ORTHO05D005221 0.0e+00 1142.9 927 64.2
EL10Ac1g01668 Beta vulgaris HOM05D004101 ORTHO05D005221 0.0e+00 1138.6 930 63.8
ClCG11G008940 Citrullus lanatus HOM05D004101 ORTHO05D005221 0.0e+00 1137.9 925 64.1
MSTRG.12725 Avicennia marina HOM05D004101 ORTHO05D005221 0.0e+00 1132.5 933 63.3
Gohir.D02G102700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1128.2 878 67.8
Aqoxy6G00101 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1125.9 989 59.6
Aqoxy6G01398 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1120.1 989 59.7
Aqoxy2G02197 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1119.8 989 59.7
Sabra19G0083800 Salix brachista HOM05D004101 ORTHO05D005221 0.0e+00 1115.5 1074 57.2
Eucgr.F02954 Eucalyptus grandis HOM05D004101 ORTHO05D005221 0.0e+00 1115.1 923 63.3
Sp1g27280 Schrenkiella parvula HOM05D004101 ORTHO05D005221 0.0e+00 1115.1 928 61.7
BcaB07g32808 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1111.3 935 61.4
Thhalv10006721m.g Eutrema salsugineum HOM05D004101 ORTHO05D005221 0.0e+00 1110.1 956 61.0
Aa31LG2G14460 Aethionema arabicum HOM05D004101 ORTHO05D005221 0.0e+00 1109.7 928 61.7
CARHR287040 Cardamine hirsuta HOM05D004101 ORTHO05D005221 0.0e+00 1106.7 941 61.4
Carub.0001s2990 Capsella rubella HOM05D004101 ORTHO05D005221 0.0e+00 1105.1 951 61.0
Migut.D00784 Erythranthe guttata HOM05D004101 ORTHO05D005221 0.0e+00 1102.0 931 61.2
Atru.chr13.2501 Acer truncatum HOM05D004101 ORTHO05D005221 0.0e+00 1101.7 819 68.7
C05p30730 Brassica napus HOM05D004101 ORTHO05D005221 0.0e+00 1100.9 944 60.9
AT1G31480 Arabidopsis thaliana HOM05D004101 ORTHO05D005221 0.0e+00 1100.5 941 60.8
Atru.chr13.2489 Acer truncatum HOM05D004101 ORTHO05D005221 0.0e+00 1099.7 941 62.4
Aa31LG9G15840 Aethionema arabicum HOM05D004101 ORTHO05D005221 0.0e+00 1097.4 939 60.1
BcaC05g27176 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1097.4 944 60.9
BolC5t31805H Brassica oleracea HOM05D004101 ORTHO05D005221 0.0e+00 1097.4 944 60.9
HanXRQChr03g0062111 Helianthus annuus HOM05D004101 ORTHO05D005221 0.0e+00 1096.3 942 59.7
BraA09t39007Z Brassica rapa HOM05D004101 ORTHO05D005221 0.0e+00 1095.9 945 60.7
SalBow2G0849 Salvia bowleyana HOM05D004101 ORTHO05D005221 0.0e+00 1094.7 972 59.3
SGA_v2.0_scaffold120G33012 Striga asiatica HOM05D004101 ORTHO05D005221 0.0e+00 1094.7 1005 58.5
AL1G49570 Arabidopsis lyrata HOM05D004101 ORTHO05D005221 0.0e+00 1094.3 951 60.5
ATR1089G044 Amborella trichopoda HOM05D004101 ORTHO05D005221 0.0e+00 1084.7 952 59.1
BraA08t33053Z Brassica rapa HOM05D004101 ORTHO05D005221 0.0e+00 1084.7 947 59.9
A08p10530 Brassica napus HOM05D004101 ORTHO05D005221 0.0e+00 1082.8 943 59.8
Cc10_g08720 Coffea canephora HOM05D004101 ORTHO05D005221 0.0e+00 1082.4 988 59.1
SGA_v2.0_scaffold158G37476 Striga asiatica HOM05D004101 ORTHO05D005221 0.0e+00 1075.8 968 58.6
PSO017G3151 Papaver somniferum HOM05D004101 ORTHO05D005221 1.7e-310 1069.3 933 59.5
CAN.G282.41 Capsicum annuum HOM05D004101 ORTHO05D005221 2.4e-309 1065.4 968 58.0
DCAR_019079 Daucus carota HOM05D004101 ORTHO05D005221 2.4e-309 1065.4 1056 55.0
Lj9A698G58 Lonicera japonica HOM05D004101 ORTHO05D005221 4.1e-309 1064.7 938 61.3
Peaxi162Scf00021g02415 Petunia axillaris HOM05D004101 ORTHO05D005221 2.0e-308 1062.4 943 60.1
ECA234G0584 Erigeron canadensis HOM05D004101 ORTHO05D005221 5.9e-308 1060.8 937 58.9
BcaC07g37755 Brassica carinata HOM05D004101 ORTHO05D005221 7.7e-308 1060.4 938 59.6
BolC8t48140H Brassica oleracea HOM05D004101 ORTHO05D005221 7.7e-308 1060.4 938 59.6
ECA240G3381 Erigeron canadensis HOM05D004101 ORTHO05D005221 2.9e-307 1058.5 952 59.3
PSO017G5679 Papaver somniferum HOM05D004101 ORTHO05D005221 1.9e-306 1055.8 923 60.3
PSO170G4509 Papaver somniferum HOM05D004101 ORTHO05D005221 8.0e-305 1050.4 925 60.2
MELO3C008088.2 Cucumis melo HOM05D004101 ORTHO05D005221 3.0e-304 1048.5 848 62.9
PSO170G4791 Papaver somniferum HOM05D004101 ORTHO05D005221 9.8e-303 1043.5 922 58.8
Nitab4.5_0000069g0130 Nicotiana tabacum HOM05D004101 ORTHO05D005221 1.4e-301 1039.6 886 61.7
Lsat_1_v5_gn_7_42860 Lactuca sativa HOM05D004101 ORTHO05D005221 5.0e-299 1031.2 936 58.3
COL.COLO4_06914 Corchorus olitorius HOM05D004101 ORTHO05D005221 2.8e-294 1015.4 853 63.4
Os08g0110700 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 2.7e-284 982.2 929 57.1
Zm00001eb174090 Zea mays HOM05D004101 ORTHO05D005221 2.7e-284 982.2 951 55.9
Hund26650 Selenicereus undatus HOM05D004101 ORTHO05D005221 1.0e-283 980.3 1177 50.0
AUR62022357 Chenopodium quinoa HOM05D004101 ORTHO05D005221 1.1e-282 976.9 959 55.6
AUR62034351 Chenopodium quinoa HOM05D004101 ORTHO05D005221 1.1e-282 976.9 942 57.0
Zm00001eb260480 Zea mays HOM05D004101 ORTHO05D005221 7.3e-282 974.2 949 55.2
HPP92_008596 Vanilla planifolia HOM05D004101 ORTHO05D005221 8.0e-281 970.7 1045 52.4
Sc26g0002190 Simmondsia chinensis HOM05D004101 ORTHO05D005221 8.3e-278 960.7 818 62.2
THA.LOC104812717 Tarenaya hassleriana HOM05D004101 ORTHO05D005221 1.6e-260 903.3 782 61.4
Ah.07g205660 Amaranthus hybridus HOM05D004101 ORTHO05D005221 5.4e-253 878.2 953 52.7
unitig_8.g3682 Utricularia gibba HOM05D004101 ORTHO05D005221 1.1e-248 864.0 918 52.9
BcaB04g18153 Brassica carinata HOM05D004101 ORTHO05D005221 3.1e-248 862.4 761 58.6
Mapoly0151s0040 Marchantia polymorpha HOM05D004101 ORTHO05D005221 3.9e-243 845.5 914 49.8
Gohir.D05G255640 Gossypium hirsutum HOM05D004101 ORTHO05D005221 3.3e-242 842.4 694 65.4
AagrBONN_evm.TU.Sc2ySwM_228.4088 Anthoceros agrestis HOM05D004101 ORTHO05D005221 3.4e-239 832.4 919 49.3
SMO200G0043 Selaginella moellendorffii HOM05D004101 ORTHO05D005221 1.1e-237 827.4 860 51.5
Pp3c3_10170 Physcomitrium patens HOM05D004101 ORTHO05D005221 8.7e-227 791.2 1107 41.7
Nitab4.5_0009427g0010 Nicotiana tabacum HOM05D004101 ORTHO05D005221 6.5e-222 775.0 732 57.1
TPR.G31924 Trifolium pratense HOM05D004101 ORTHO05D005221 2.3e-203 713.4 643 58.6
A09p34710 Brassica napus HOM05D004101 ORTHO05D005221 3.8e-198 696.0 630 58.1
CDE02G0702 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 1.6e-191 674.1 684 55.7
Rhsim08G0116000 Rhododendron simsii HOM05D004101 ORTHO05D005221 3.4e-186 656.4 753 50.5
Migut.N00698 Erythranthe guttata HOM05D004101 ORTHO05D005221 1.0e-179 634.8 420 75.2
Cpa.g.sc24.82 Carica papaya HOM05D004101 ORTHO05D005221 6.6e-166 589.0 476 65.5
vmacro14428 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 3.0e-158 563.5 356 78.1
vmacro17837 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 1.7e-153 547.7 401 70.3
Lj2A387T50 Lonicera japonica HOM05D004101 ORTHO05D005221 3.3e-149 533.5 384 71.1
vmacro17836 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 2.4e-136 490.7 716 43.3
Lj2A387G43 Lonicera japonica HOM05D004101 ORTHO05D005221 4.5e-130 469.9 607 47.8
Gohir.D05G255660 Gossypium hirsutum HOM05D004101 ORTHO05D005221 1.4e-123 448.4 471 54.4
HPP92_008552 Vanilla planifolia HOM05D004101 ORTHO05D005221 1.7e-121 441.4 555 46.8
Oeu006618.1 Olea europaea HOM05D004101 ORTHO05D005221 1.1e-115 422.2 285 73.0
Lsat_1_v5_gn_5_98501 Lactuca sativa HOM05D004101 ORTHO05D007752 1.4e-115 421.8 297 69.4
HPP92_008553 Vanilla planifolia HOM05D004101 ORTHO05D005221 2.6e-114 417.5 298 70.1
Migut.N00699 Erythranthe guttata HOM05D004101 ORTHO05D005221 6.7e-102 376.3 313 59.1
CBR_g19663 Chara braunii HOM05D004101 ORTHO05D005221 3.8e-97 360.5 320 57.2
Cpa.g.sc24.85 Carica papaya HOM05D004101 ORTHO05D005221 1.5e-85 322.0 208 77.4
vmacro14430 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 4.7e-55 220.7 139 70.5
BcaB04g18154 Brassica carinata HOM05D004101 ORTHO05D005221 1.7e-52 212.2 164 68.3
CDE02G4445 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 8.0e-47 193.4 198 50.5
A09p34730 Brassica napus HOM05D004101 ORTHO05D005221 2.6e-45 188.3 141 68.8
vmacro14429 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 1.2e-39 169.5 296 40.2
QL93p1879_0034 Quercus lobata HOM05D004101 ORTHO05D005221 1.7e-36 159.1 116 64.7
Aqoxy2G00645 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 3.6e-31 141.4 150 49.3
SEGI_28351 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 4.4e-29 134.4 91 72.5
SEGI_18218 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 5.8e-29 134.0 76 84.2
SEGI_38945 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 3.1e-22 111.7 85 57.6
Cpa.g.sc24.79 Carica papaya HOM05D004101 ORTHO05D005221 5.3e-22 110.9 66 78.8
PSO017G1167 Papaver somniferum HOM05D004101 ORTHO05D005221 3.4e-21 108.2 97 51.5
COL.COLO4_06915 Corchorus olitorius HOM05D004101 ORTHO05D005221 1.2e-13 83.2 57 70.2
BolC1t03898H Brassica oleracea HOM05D010251 ORTHO05D005221 5.8e-13 80.9 169 33.7
Medtr5g080490 Medicago truncatula HOM05D004101 ORTHO05D005221 1.3e-12 79.7 61 62.3
SHI03798 Sapria himalayana HOM05D004101 ORTHO05D005221 2.9e-12 78.6 98 46.9
SMO200G0098 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 2.9e-12 78.6 82 51.2
Os07g0406600 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 3.0e-09 68.6 46 60.9
Pp3c3_10160 Physcomitrium patens HOM05D004101 ORTHO05D005221 8.7e-09 67.0 139 30.9
VMungo0251G0072 Vigna mungo HOM05D004101 ORTHO05D005221 1.3e-07 63.2 35 74.3
Lsat_1_v5_gn_5_153621 Lactuca sativa HOM05D004101 ORTHO05D005221 1.6e-07 62.8 68 47.1
BolC2t10203H Brassica oleracea HOM05D004101 ORTHO05D027158 2.8e-07 62.0 63 44.4
SMO200G0135 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 3.7e-07 61.6 62 51.6
BolC2t10210H Brassica oleracea HOM05D004101 ORTHO05D027158 4.8e-07 61.2 55 49.1
A01p24750 Brassica napus HOM05D004101 ORTHO05D027158 5.3e-06 57.8 53 49.1


User provided reference genes

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