Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g35030 Fragaria vesca HOM05D002914 ORTHO05D003196 1.0e-58 229.9 120 100.0
FAN15G3578 Fragaria x ananassa HOM05D002914 ORTHO05D003196 4.6e-56 221.1 120 95.8
FAN20G2785 Fragaria x ananassa HOM05D002914 ORTHO05D003196 5.1e-55 217.6 120 94.2
FAN27G2590 Fragaria x ananassa HOM05D002914 ORTHO05D003196 1.6e-53 212.6 120 92.5
RcHm_v2.0_Chr6g0306971 Rosa chinensis HOM05D002914 ORTHO05D003196 6.5e-42 174.1 122 78.7
Atru.chr13.614 Acer truncatum HOM05D002914 ORTHO05D003196 2.4e-20 102.4 99 55.6
Sed0019897 Sechium edule HOM05D002914 ORTHO05D003196 4.5e-19 98.2 117 51.3
Lj1g0002449 Lotus japonicus HOM05D002914 ORTHO05D003196 5.9e-19 97.8 102 48.0
Potri.014G035400 Populus trichocarpa HOM05D002914 ORTHO05D003196 5.9e-19 97.8 111 51.4
Nitab4.5_0002673g0030 Nicotiana tabacum HOM05D002914 ORTHO05D003196 7.7e-19 97.4 95 51.6
Glyma.04G036500 Glycine max HOM05D002914 ORTHO05D003196 1.3e-18 96.7 101 54.5
TPR.G40737 Trifolium pratense HOM05D002914 ORTHO05D003196 1.7e-18 96.3 127 50.4
Glyma.06G036600 Glycine max HOM05D002914 ORTHO05D003196 2.2e-18 95.9 99 54.5
Lalb_Chr16g0384551 Lupinus albus HOM05D002914 ORTHO05D003196 3.8e-18 95.1 117 45.3
Lalb_Chr23g0266911 Lupinus albus HOM05D002914 ORTHO05D003196 3.8e-18 95.1 115 48.7
arahy.Tifrunner.gnm1.ann1.HH3ECB Arachis hypogaea HOM05D002914 ORTHO05D003196 5.0e-18 94.7 124 48.4
CANSAT25G0897 Cannabis sativa HOM05D002914 ORTHO05D003196 5.0e-18 94.7 93 52.7
Ca_15973_v3 Cicer arietinum L. HOM05D002914 ORTHO05D003196 6.5e-18 94.4 120 46.7
ClCG08G015580 Citrullus lanatus HOM05D002914 ORTHO05D003196 6.5e-18 94.4 99 56.6
Nitab4.5_0000876g0190 Nicotiana tabacum HOM05D002914 ORTHO05D003196 6.5e-18 94.4 99 47.5
MELO3C010895.2 Cucumis melo HOM05D002914 ORTHO05D003196 1.1e-17 93.6 105 54.3
Oeu003691.1 Olea europaea HOM05D002914 ORTHO05D003196 1.9e-17 92.8 94 50.0
CsaV3_2G028190 Cucumis sativus L. HOM05D002914 ORTHO05D003196 3.2e-17 92.0 105 52.4
Medtr4g086780 Medicago truncatula HOM05D002914 ORTHO05D003196 4.2e-17 91.7 78 56.4
TWI36G0119 Tripterygium wilfordii HOM05D002914 ORTHO05D003196 4.2e-17 91.7 128 47.7
Oeu013680.1 Olea europaea HOM05D002914 ORTHO05D003196 7.2e-17 90.9 98 49.0
Thecc.08G014700 Theobroma cacao HOM05D002914 ORTHO05D003196 7.2e-17 90.9 102 51.0
ECA236G0292 Erigeron canadensis HOM05D002914 ORTHO05D003196 9.4e-17 90.5 107 47.7
Psat5g044840 Pisum sativum HOM05D002914 ORTHO05D003196 9.4e-17 90.5 95 53.7
QL02p006168 Quercus lobata HOM05D002914 ORTHO05D003196 9.4e-17 90.5 118 47.5
Oeu010582.1 Olea europaea HOM05D002914 ORTHO05D003196 1.2e-16 90.1 70 60.0
Dinv42126 Davidia involucrata HOM05D002914 ORTHO05D003196 1.6e-16 89.7 123 46.3
DCAR_022064 Daucus carota HOM05D002914 ORTHO05D003196 2.1e-16 89.4 81 48.1
HanXRQChr16g0509571 Helianthus annuus HOM05D002914 ORTHO05D003196 2.7e-16 89.0 90 48.9
PGR083G2546 Punica granatum HOM05D002914 ORTHO05D003196 2.7e-16 89.0 114 50.9
Sp4g07710 Schrenkiella parvula HOM05D002914 ORTHO05D003196 2.7e-16 89.0 117 46.2
Duzib248G0090 Durio zibethinus HOM05D002914 ORTHO05D003196 3.6e-16 88.6 85 49.4
AT2G26520 Arabidopsis thaliana HOM05D002914 ORTHO05D003196 4.7e-16 88.2 106 45.3
Nitab4.5_0000876g0210 Nicotiana tabacum HOM05D002914 ORTHO05D003196 4.7e-16 88.2 95 48.4
Oeu003693.1 Olea europaea HOM05D002914 ORTHO05D003196 6.1e-16 87.8 64 65.6
Sc15g0006440 Simmondsia chinensis HOM05D002914 ORTHO05D003196 6.1e-16 87.8 60 66.7
Migut.B00310 Erythranthe guttata HOM05D002914 ORTHO05D003196 8.0e-16 87.4 79 55.7
SGA_v2.0_scaffold58G20610 Striga asiatica HOM05D002914 ORTHO05D003196 1.0e-15 87.0 88 47.7
Prupe.1G441900 Prunus persica HOM05D002914 ORTHO05D003196 1.4e-15 86.7 120 47.5
Medtr3g101240 Medicago truncatula HOM05D002914 ORTHO05D003196 1.8e-15 86.3 96 49.0
AL4G19370 Arabidopsis lyrata HOM05D002914 ORTHO05D003196 2.3e-15 85.9 107 46.7
CDE01G0545 Ceratophyllum demersum HOM05D000767 ORTHO05D003196 2.3e-15 85.9 118 39.8
RcHm_v2.0_Chr6g0259071 Rosa chinensis HOM05D002914 ORTHO05D003196 2.3e-15 85.9 83 49.4
CDE02G0277 Ceratophyllum demersum HOM05D002914 ORTHO05D003196 3.0e-15 85.5 98 49.0
HanXRQChr04g0128331 Helianthus annuus HOM05D002914 ORTHO05D003196 3.0e-15 85.5 112 41.1
Aa31LG5G9350 Aethionema arabicum HOM05D002914 ORTHO05D003196 4.0e-15 85.1 109 45.9
Duzib052G1256 Durio zibethinus HOM05D002914 ORTHO05D003196 4.0e-15 85.1 109 44.0
Manes.05G170100 Manihot esculenta HOM05D002914 ORTHO05D003196 4.0e-15 85.1 85 51.8
Rhsim05G0080600 Rhododendron simsii HOM05D002914 ORTHO05D003196 6.8e-15 84.3 117 41.0
Ah.05g168910 Amaranthus hybridus HOM05D002914 ORTHO05D003196 8.8e-15 84.0 77 54.5
Sed0007891 Sechium edule HOM05D002914 ORTHO05D003196 8.8e-15 84.0 118 47.5
Cpa.g.sc376.2 Carica papaya HOM05D002914 ORTHO05D003196 1.5e-14 83.2 76 55.3
Nitab4.5_0002462g0040 Nicotiana tabacum HOM05D002914 ORTHO05D003196 1.5e-14 83.2 101 47.5
Solyc01g108330.2 Solanum lycopersicum HOM05D002914 ORTHO05D003196 1.5e-14 83.2 115 46.1
Sopen01g050550 Solanum pennellii HOM05D002914 ORTHO05D003196 1.5e-14 83.2 115 46.1
Hma1.2p1_0584F.1_g183120 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 2.0e-14 82.8 78 51.3
Carub.0004s0669 Capsella rubella HOM05D002914 ORTHO05D003196 3.4e-14 82.0 106 45.3
Glyma.07G210000 Glycine max HOM05D002914 ORTHO05D003196 3.4e-14 82.0 86 45.3
Aqoxy5G01394 Aquilegia oxysepala HOM05D002914 ORTHO05D003196 4.4e-14 81.6 101 46.5
PGSC0003DMG400025804 Solanum tuberosum HOM05D002914 ORTHO05D003196 4.4e-14 81.6 115 45.2
Atru.chr5.2809 Acer truncatum HOM05D002914 ORTHO05D003196 7.5e-14 80.9 108 41.7
Lj5P206T48 Lonicera japonica HOM05D002914 ORTHO05D003196 7.5e-14 80.9 96 50.0
Aqoxy6G00878 Aquilegia oxysepala HOM05D002914 ORTHO05D003196 9.8e-14 80.5 80 56.2
Hma1.2p1_1589F.1_g292395 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 9.8e-14 80.5 78 55.1
Hma1.2p1_2598F.1_g325150 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 9.8e-14 80.5 78 55.1
VMungo0251G3532 Vigna mungo HOM05D002914 ORTHO05D003196 1.3e-13 80.1 86 46.5
Peaxi162Scf00016g00161 Petunia axillaris HOM05D002914 ORTHO05D003196 1.7e-13 79.7 63 58.7
THA.LOC104803788 Tarenaya hassleriana HOM05D002914 ORTHO05D003196 1.7e-13 79.7 118 40.7
Gohir.D06G013700 Gossypium hirsutum HOM05D002914 ORTHO05D003196 2.8e-13 79.0 62 54.8
Gorai.010G016300 Gossypium raimondii HOM05D002914 ORTHO05D003196 2.8e-13 79.0 62 54.8
EL10Ac9g21822 Beta vulgaris HOM05D002914 ORTHO05D003196 3.7e-13 78.6 74 45.9
TAR376G1047 Trochodendron aralioides HOM05D002914 ORTHO05D003196 3.7e-13 78.6 63 60.3
Gohir.A06G015600 Gossypium hirsutum HOM05D002914 ORTHO05D003196 4.8e-13 78.2 57 57.9
arahy.Tifrunner.gnm1.ann1.2E3RSG Arachis hypogaea HOM05D002914 ORTHO05D003196 8.3e-13 77.4 109 44.0
TAR625G1140 Trochodendron aralioides HOM05D002914 ORTHO05D003196 8.3e-13 77.4 64 54.7
ClCG02G005720 Citrullus lanatus HOM05D002914 ORTHO05D003196 1.8e-12 76.3 86 44.2
MELO3C028578.2 Cucumis melo HOM05D002914 ORTHO05D003196 1.8e-12 76.3 86 44.2
arahy.Tifrunner.gnm1.ann1.ZME7HS Arachis hypogaea HOM05D002914 ORTHO05D003196 4.1e-12 75.1 101 45.5
Lalb_Chr09g0328151 Lupinus albus HOM05D002914 ORTHO05D003196 4.1e-12 75.1 86 45.3
Ciclev10002811m.g Citrus clementina HOM05D002914 ORTHO05D003196 5.4e-12 74.7 99 45.5
CsaV3_7G008810 Cucumis sativus L. HOM05D002914 ORTHO05D003196 5.4e-12 74.7 109 39.4
Cfa005429 Carpinus fangiana HOM05D002914 ORTHO05D003196 9.1e-12 73.9 110 41.8
TWI31G1086 Tripterygium wilfordii HOM05D002914 ORTHO05D003196 9.1e-12 73.9 85 42.4
Gohir.A03G191200 Gossypium hirsutum HOM05D002914 ORTHO05D003196 1.2e-11 73.6 108 43.5
Potri.004G144400 Populus trichocarpa HOM05D002914 ORTHO05D003196 1.6e-11 73.2 85 41.2
Gorai.005G104900 Gossypium raimondii HOM05D002914 ORTHO05D003196 2.7e-11 72.4 104 39.4
PSO675G1122 Papaver somniferum HOM05D000003 ORTHO05D001026 2.7e-11 72.4 52 61.5
Sed0010504 Sechium edule HOM05D002914 ORTHO05D003196 2.7e-11 72.4 107 40.2
TAR628G0868 Trochodendron aralioides HOM05D002914 ORTHO05D003196 1.3e-10 70.1 112 40.2
CiPaw.05G054900 Carya illinoinensis HOM05D002914 ORTHO05D003196 1.7e-10 69.7 63 58.7
Ca_18662_v3 Cicer arietinum L. HOM05D002914 ORTHO05D003196 1.7e-10 69.7 63 50.8
COL.COLO4_26446 Corchorus olitorius HOM05D002914 ORTHO05D003196 1.7e-10 69.7 77 50.6
Eucgr.I01175 Eucalyptus grandis HOM05D002914 ORTHO05D003196 2.3e-10 69.3 99 40.4
ATR0225G004 Amborella trichopoda HOM05D002914 ORTHO05D003196 2.9e-10 68.9 90 46.7
Glyma.02G134900 Glycine max HOM05D002914 ORTHO05D003196 2.9e-10 68.9 86 40.7
Gohir.D02G092940 Gossypium hirsutum HOM05D002914 ORTHO05D003196 2.9e-10 68.9 104 38.5
Gorai.005G240100 Gossypium raimondii HOM05D002914 ORTHO05D003196 2.9e-10 68.9 108 41.7
Ah.01g020080 Amaranthus hybridus HOM05D002914 ORTHO05D003196 6.6e-10 67.8 76 43.4
Phvul.003G294100 Phaseolus vulgaris HOM05D002914 ORTHO05D003196 6.6e-10 67.8 116 38.8
CSS0043526 Camellia sinensis var. sinensis HOM05D002914 ORTHO05D003196 8.6e-10 67.4 41 68.3
Nn1g05872 Nelumbo nucifera HOM05D002914 ORTHO05D003196 1.1e-09 67.0 98 39.8
QL11p038331 Quercus lobata HOM05D002914 ORTHO05D003196 1.1e-09 67.0 38 71.1
Oeu007255.1 Olea europaea HOM05D002914 ORTHO05D003196 1.5e-09 66.6 75 49.3
Sabra04G0095900 Salix brachista HOM05D002914 ORTHO05D003196 1.5e-09 66.6 100 36.0
SalBow6G6648 Salvia bowleyana HOM05D002914 ORTHO05D003196 1.9e-09 66.2 42 66.7
Thecc.02G096100 Theobroma cacao HOM05D002914 ORTHO05D003196 3.3e-09 65.5 64 48.4
Nn5g30169 Nelumbo nucifera HOM05D002914 ORTHO05D003196 4.2e-09 65.1 112 41.1
Gohir.A13G037800 Gossypium hirsutum HOM05D002914 ORTHO05D003196 5.5e-09 64.7 64 46.9
PSO170G6047 Papaver somniferum HOM05D002914 ORTHO05D003196 5.5e-09 64.7 42 69.0
COL.COLO4_11718 Corchorus olitorius HOM05D002914 ORTHO05D003196 7.2e-09 64.3 60 51.7
Gorai.013G040900 Gossypium raimondii HOM05D002914 ORTHO05D003196 7.2e-09 64.3 46 58.7
HPP92_003444 Vanilla planifolia HOM05D002914 ORTHO05D003196 7.2e-09 64.3 115 33.9
CSS0030933 Camellia sinensis var. sinensis HOM05D002914 ORTHO05D003196 9.5e-09 63.9 82 42.7
CSS0032479 Camellia sinensis var. sinensis HOM05D002914 ORTHO05D003196 9.5e-09 63.9 82 42.7
Prupe.8G116500 Prunus persica HOM05D002914 ORTHO05D003196 9.5e-09 63.9 80 45.0
Lsat_1_v5_gn_5_161660 Lactuca sativa HOM05D002914 ORTHO05D003196 1.2e-08 63.5 88 38.6
Lalb_Chr05g0219001 Lupinus albus HOM05D002914 ORTHO05D003196 1.2e-08 63.5 113 39.8
Potri.009G106300 Populus trichocarpa HOM05D002914 ORTHO05D003196 1.2e-08 63.5 93 34.4
CiPaw.06G141400 Carya illinoinensis HOM05D002914 ORTHO05D003196 1.6e-08 63.2 59 55.9
Cpa.g.sc62.45 Carica papaya HOM05D002914 ORTHO05D003196 2.8e-08 62.4 67 50.7
Sc08g0000120 Simmondsia chinensis HOM05D002914 ORTHO05D003196 2.8e-08 62.4 93 38.7
BcaB02g08314 Brassica carinata HOM05D002914 ORTHO05D003196 4.7e-08 61.6 81 40.7
A04p03090 Brassica napus HOM05D002914 ORTHO05D003196 4.7e-08 61.6 93 38.7
BraA04t16032Z Brassica rapa HOM05D002914 ORTHO05D003196 4.7e-08 61.6 93 38.7
FAN24G0092 Fragaria x ananassa HOM05D002914 ORTHO05D003196 4.7e-08 61.6 66 51.5
Gohir.D13G036200 Gossypium hirsutum HOM05D002914 ORTHO05D003196 4.7e-08 61.6 71 43.7
unitig_699.g19875 Utricularia gibba HOM05D002914 ORTHO05D003196 4.7e-08 61.6 85 43.5
CANSAT80G1635 Cannabis sativa HOM05D002914 ORTHO05D003196 6.1e-08 61.2 83 43.4
Manes.09G023600 Manihot esculenta HOM05D002914 ORTHO05D003196 6.1e-08 61.2 87 39.1
Peaxi162Scf00493g00035 Petunia axillaris HOM05D002914 ORTHO05D003196 6.1e-08 61.2 74 43.2
Manes.15G143200 Manihot esculenta HOM05D002914 ORTHO05D003196 8.0e-08 60.8 82 42.7
Nitab4.5_0005892g0010 Nicotiana tabacum HOM05D002914 ORTHO05D003196 8.0e-08 60.8 84 42.9
Sopen04g007610 Solanum pennellii HOM05D002914 ORTHO05D003196 8.0e-08 60.8 65 46.2
Manes.08G049900 Manihot esculenta HOM05D002914 ORTHO05D003196 1.0e-07 60.5 85 40.0
Prupe.7G063700 Prunus persica HOM05D002914 ORTHO05D003196 1.0e-07 60.5 94 34.0
HPP92_007074 Vanilla planifolia HOM05D002914 ORTHO05D003196 1.0e-07 60.5 89 39.3
Psat7g121600 Pisum sativum HOM05D002914 ORTHO05D003196 1.8e-07 59.7 85 38.8
EL10Ac3g07073 Beta vulgaris HOM05D002914 ORTHO05D003196 2.3e-07 59.3 76 42.1
MD14G1070500 Malus domestica HOM05D002914 ORTHO05D003196 3.0e-07 58.9 112 33.9
Solyc04g015540.1 Solanum lycopersicum HOM05D002914 ORTHO05D003196 3.0e-07 58.9 74 43.2
Gohir.A01G132111 Gossypium hirsutum HOM05D002914 ORTHO05D003196 4.0e-07 58.5 78 38.5
SGA_v2.0_scaffold105G30420 Striga asiatica HOM05D002914 ORTHO05D003196 4.0e-07 58.5 84 40.5
CSS0032433 Camellia sinensis var. sinensis HOM05D002914 ORTHO05D003196 5.2e-07 58.2 82 40.2
Duzib093G1261 Durio zibethinus HOM05D002914 ORTHO05D003196 5.2e-07 58.2 75 41.3
Sabra09G0081200 Salix brachista HOM05D002914 ORTHO05D003196 5.2e-07 58.2 101 31.7
Dinv18053 Davidia involucrata HOM05D002914 ORTHO05D003196 6.8e-07 57.8 112 35.7
Nn2g15303 Nelumbo nucifera HOM05D002914 ORTHO05D003196 6.8e-07 57.8 68 38.2
FAN20G0574 Fragaria x ananassa HOM05D002914 ORTHO05D003196 8.9e-07 57.4 111 38.7
Gohir.D02G212150 Gossypium hirsutum HOM05D002914 ORTHO05D003196 8.9e-07 57.4 108 37.0
PGR142G0527 Punica granatum HOM05D002914 ORTHO05D003196 8.9e-07 57.4 62 43.5
Thecc.05G158000 Theobroma cacao HOM05D002914 ORTHO05D003196 8.9e-07 57.4 81 39.5
Ah.04g151670 Amaranthus hybridus HOM05D002914 ORTHO05D003196 1.2e-06 57.0 73 41.1
FvH4_2g06840 Fragaria vesca HOM05D002914 ORTHO05D003196 1.2e-06 57.0 111 37.8
Lj4g0007898 Lotus japonicus HOM05D002914 ORTHO05D003196 1.2e-06 57.0 85 43.5
PGSC0003DMG400027270 Solanum tuberosum HOM05D002914 ORTHO05D003196 1.2e-06 57.0 64 43.8
TWI74G1608 Tripterygium wilfordii HOM05D002914 ORTHO05D003196 1.2e-06 57.0 62 45.2
COL.COLO4_28237 Corchorus olitorius HOM05D002914 ORTHO05D003196 1.5e-06 56.6 74 39.2
TAR623G0040 Trochodendron aralioides HOM05D002914 ORTHO05D003196 1.5e-06 56.6 109 36.7
Carub.0005s2434 Capsella rubella HOM05D002914 ORTHO05D003196 2.0e-06 56.2 63 44.4
AL5G39080 Arabidopsis lyrata HOM05D002914 ORTHO05D003196 2.6e-06 55.8 63 44.4
Thhalv10006376m.g Eutrema salsugineum HOM05D002914 ORTHO05D003196 2.6e-06 55.8 63 44.4
BcaC07g40375 Brassica carinata HOM05D002914 ORTHO05D003196 3.4e-06 55.5 79 39.2
A09p50360 Brassica napus HOM05D002914 ORTHO05D003196 3.4e-06 55.5 79 39.2
C08p33030 Brassica napus HOM05D002914 ORTHO05D003196 3.4e-06 55.5 79 39.2
BolC8t50903H Brassica oleracea HOM05D002914 ORTHO05D003196 3.4e-06 55.5 79 39.2
BraA09t40488Z Brassica rapa HOM05D002914 ORTHO05D003196 3.4e-06 55.5 79 39.2
FAN15G1103 Fragaria x ananassa HOM05D002914 ORTHO05D003196 3.4e-06 55.5 111 37.8
Hma1.2p1_1847F.1_g305210 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 3.4e-06 55.5 60 43.3
Nn7g36239 Nelumbo nucifera HOM05D002914 ORTHO05D003196 3.4e-06 55.5 101 38.6
Oeu000823.1 Olea europaea HOM05D002914 ORTHO05D003196 3.4e-06 55.5 88 36.4
TPR.G27766 Trifolium pratense HOM05D002914 ORTHO05D003196 3.4e-06 55.5 91 37.4
AT3G57500 Arabidopsis thaliana HOM05D002914 ORTHO05D003196 4.4e-06 55.1 63 46.0
THA.LOC104802149 Tarenaya hassleriana HOM05D002914 ORTHO05D003196 4.4e-06 55.1 78 39.7
Aqoxy2G00187 Aquilegia oxysepala HOM05D002914 ORTHO05D003196 5.7e-06 54.7 65 41.5
BcaC02g09941 Brassica carinata HOM05D002914 ORTHO05D003196 7.5e-06 54.3 79 40.5
C04p34950 Brassica napus HOM05D002914 ORTHO05D003196 7.5e-06 54.3 79 40.5
BolC4t25049H Brassica oleracea HOM05D002914 ORTHO05D003196 7.5e-06 54.3 79 40.5
Lj1g0015891 Lotus japonicus HOM05D002914 ORTHO05D003196 7.5e-06 54.3 108 35.2
CiPaw.09G037100 Carya illinoinensis HOM05D002914 ORTHO05D003196 9.8e-06 53.9 99 37.4
Lalb_Chr20g0110761 Lupinus albus HOM05D002914 ORTHO05D003196 9.8e-06 53.9 81 38.3


User provided reference genes

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