Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g34880 Fragaria vesca HOM05D000561 ORTHO05D008162 1.2e-147 526.6 272 100.0
FAN27G1876 Fragaria x ananassa HOM05D000561 ORTHO05D008162 4.3e-134 481.5 286 91.3
RcHm_v2.0_Chr6g0307161 Rosa chinensis HOM05D000561 ORTHO05D008162 5.8e-131 471.1 279 90.3
FAN20G2490 Fragaria x ananassa HOM05D000561 ORTHO05D008162 1.0e-127 460.3 364 72.3
MD08G1106500 Malus domestica HOM05D000561 ORTHO05D008162 4.1e-116 421.8 283 78.1
Prupe.1G440800 Prunus persica HOM05D000561 ORTHO05D008162 4.1e-116 421.8 284 78.2
MD15G1087100 Malus domestica HOM05D000561 ORTHO05D008162 1.0e-111 407.1 283 75.6
Potri.014G034700 Populus trichocarpa HOM05D000561 ORTHO05D008162 1.6e-109 399.8 269 76.2
Sabra14G0024600 Salix brachista HOM05D000561 ORTHO05D008162 2.2e-109 399.4 270 75.9
Atru.chr13.629 Acer truncatum HOM05D000561 ORTHO05D008162 2.4e-108 396.0 262 77.1
Atru.chr13.633 Acer truncatum HOM05D000561 ORTHO05D008162 2.4e-108 396.0 262 77.1
Ciclev10001965m.g Citrus clementina HOM05D000561 ORTHO05D008162 9.0e-108 394.0 236 81.8
TWI56G0230 Tripterygium wilfordii HOM05D000561 ORTHO05D008162 1.3e-106 390.2 263 76.8
Haze_17567 Corylus avellana HOM05D000561 ORTHO05D008162 6.5e-106 387.9 274 75.5
QL02p005893 Quercus lobata HOM05D000561 ORTHO05D008162 1.4e-105 386.7 260 78.1
GSVIVG01009559001 Vitis vinifera HOM05D000561 ORTHO05D008162 7.9e-104 380.9 281 73.0
Dinv39338 Davidia involucrata HOM05D000561 ORTHO05D008162 1.8e-103 379.8 285 71.6
Manes.05G170800 Manihot esculenta HOM05D000561 ORTHO05D008162 1.8e-103 379.8 276 72.8
Hma1.2p1_0260F.1_g104740 Hydrangea macrophylla HOM05D000561 ORTHO05D008162 1.5e-102 376.7 264 73.9
TAR628G0509 Trochodendron aralioides HOM05D000561 ORTHO05D008162 1.5e-102 376.7 269 74.3
Thecc.08G013400 Theobroma cacao HOM05D000561 ORTHO05D008162 2.5e-102 375.9 273 71.8
Duzib116G0222 Durio zibethinus HOM05D000561 ORTHO05D008162 5.7e-102 374.8 287 71.1
Gorai.009G209500 Gossypium raimondii HOM05D000561 ORTHO05D008162 1.8e-100 369.8 290 67.6
Manes.18G034000 Manihot esculenta HOM05D000561 ORTHO05D008162 2.4e-100 369.4 274 71.9
Duzib093G1567 Durio zibethinus HOM05D000561 ORTHO05D008162 5.3e-100 368.2 271 69.0
Nn5g30201 Nelumbo nucifera HOM05D000561 ORTHO05D000514 9.1e-100 367.5 255 75.3
Gohir.D05G203500 Gossypium hirsutum HOM05D000561 ORTHO05D008162 1.2e-99 367.1 290 67.9
Sed0001510 Sechium edule HOM05D000561 ORTHO05D008162 1.5e-99 366.7 286 67.8
CiPaw.16G047800 Carya illinoinensis HOM05D000561 ORTHO05D008162 3.4e-99 365.5 263 74.1
Actinidia22609 Actinidia chinensis HOM05D000561 ORTHO05D008162 5.9e-99 364.8 269 73.2
vmacro21557 Vaccinium macrocarpon HOM05D000561 ORTHO05D008162 1.0e-98 364.0 269 71.0
CSS0036187 Camellia sinensis var. sinensis HOM05D000561 ORTHO05D008162 1.7e-98 363.2 239 79.1
PSO675G5921 Papaver somniferum HOM05D000561 ORTHO05D008162 2.9e-98 362.5 259 73.0
TAR625G0340 Trochodendron aralioides HOM05D000561 ORTHO05D008162 2.9e-98 362.5 271 70.1
Sabra02G0100300 Salix brachista HOM05D000561 ORTHO05D008162 5.0e-98 361.7 253 75.1
PSO541G5839 Papaver somniferum HOM05D000561 ORTHO05D008162 6.5e-98 361.3 258 72.9
Rhsim06G0046600 Rhododendron simsii HOM05D000561 ORTHO05D008162 1.9e-97 359.8 281 69.8
Lj1g0015016 Lotus japonicus HOM05D000561 ORTHO05D008162 3.2e-97 359.0 275 69.8
Gohir.A05G200200 Gossypium hirsutum HOM05D000561 ORTHO05D008162 5.5e-97 358.2 290 67.2
Cc10_g03990 Coffea canephora HOM05D000561 ORTHO05D008162 7.2e-97 357.8 249 71.1
Nitab4.5_0005549g0040 Nicotiana tabacum HOM05D000561 ORTHO05D008162 9.4e-97 357.5 258 71.3
Lalb_Chr08g0245641 Lupinus albus HOM05D000561 ORTHO05D008162 7.9e-96 354.4 246 74.0
Nitab4.5_0000068g0440 Nicotiana tabacum HOM05D000561 ORTHO05D008162 7.9e-96 354.4 258 70.5
Phvul.009G063100 Phaseolus vulgaris HOM05D000561 ORTHO05D008162 5.1e-95 351.7 286 67.5
MELO3C010892.2 Cucumis melo HOM05D000561 ORTHO05D008162 8.8e-95 350.9 293 65.5
Glyma.06G037300 Glycine max HOM05D000561 ORTHO05D008162 1.5e-94 350.1 288 66.7
MBI06_g08185_MAGBIO Magnolia biondii HOM05D000561 ORTHO05D008162 2.0e-94 349.7 292 64.0
arahy.Tifrunner.gnm1.ann1.YYC1CT Arachis hypogaea HOM05D000561 ORTHO05D008162 2.6e-94 349.4 277 68.2
Ca_15966_v3 Cicer arietinum L. HOM05D000561 ORTHO05D008162 7.4e-94 347.8 263 70.7
CsaV3_2G028140 Cucumis sativus L. HOM05D000561 ORTHO05D008162 1.3e-93 347.1 292 65.4
ClCG08G015630 Citrullus lanatus HOM05D000561 ORTHO05D008162 1.7e-93 346.7 290 65.5
MSTRG.1332 Avicennia marina HOM05D000561 ORTHO05D008162 3.7e-93 345.5 270 67.8
Migut.C00604 Erythranthe guttata HOM05D000561 ORTHO05D008162 6.3e-93 344.7 269 67.7
CAN.G371.47 Capsicum annuum HOM05D000561 ORTHO05D008162 1.8e-92 343.2 246 69.1
Medtr3g101350 Medicago truncatula HOM05D000561 ORTHO05D008162 2.4e-92 342.8 244 71.3
AL4G19400 Arabidopsis lyrata HOM05D000561 ORTHO05D008162 3.1e-92 342.4 263 68.1
CDE06G2652 Ceratophyllum demersum HOM05D000561 ORTHO05D008162 3.1e-92 342.4 264 67.4
DCAR_019467 Daucus carota HOM05D000561 ORTHO05D008162 3.1e-92 342.4 274 66.4
CARHR050650 Cardamine hirsuta HOM05D000561 ORTHO05D008162 7.0e-92 341.3 269 66.5
Peaxi162Scf00566g00219 Petunia axillaris HOM05D000561 ORTHO05D008162 9.1e-92 340.9 255 67.8
COL.COLO4_26457 Corchorus olitorius HOM05D000561 ORTHO05D008162 2.0e-91 339.7 217 76.5
Psat5g044440 Pisum sativum HOM05D000561 ORTHO05D008162 2.6e-91 339.3 272 66.9
TPR.G10521 Trifolium pratense HOM05D000561 ORTHO05D008162 2.6e-91 339.3 243 71.2
PGR031G3300 Punica granatum HOM05D000561 ORTHO05D008162 7.7e-91 337.8 241 72.2
Solyc04g079320.4 Solanum lycopersicum HOM05D000561 ORTHO05D008162 7.7e-91 337.8 242 69.4
Sopen04g032930 Solanum pennellii HOM05D000561 ORTHO05D008162 7.7e-91 337.8 249 67.9
Sp4g07760 Schrenkiella parvula HOM05D000561 ORTHO05D008162 1.7e-90 336.7 279 65.9
HanXRQChr02g0038741 Helianthus annuus HOM05D000561 ORTHO05D008162 5.0e-90 335.1 263 66.5
Eucgr.F02370 Eucalyptus grandis HOM05D000561 ORTHO05D008162 1.9e-89 333.2 216 75.9
SalBow7G2378 Salvia bowleyana HOM05D000561 ORTHO05D008162 1.6e-88 330.1 313 56.5
THA.LOC104803685 Tarenaya hassleriana HOM05D000561 ORTHO05D008162 1.6e-88 330.1 240 67.9
HanXRQChr09g0268001 Helianthus annuus HOM05D000561 ORTHO05D008162 1.0e-87 327.4 275 64.4
AT2G26540 Arabidopsis thaliana HOM05D000561 ORTHO05D008162 1.4e-87 327.0 283 63.6
Carub.0003s2738 Capsella rubella HOM05D000561 ORTHO05D008162 1.4e-87 327.0 267 65.9
ECA232G0584 Erigeron canadensis HOM05D000561 ORTHO05D008162 2.3e-87 326.2 276 62.7
Aqoxy6G01386 Aquilegia oxysepala HOM05D000561 ORTHO05D008162 5.2e-87 325.1 235 70.2
Lsat_1_v5_gn_4_124200 Lactuca sativa HOM05D000561 ORTHO05D008162 5.2e-87 325.1 264 65.2
A09p55150 Brassica napus HOM05D000561 ORTHO05D008162 1.1e-86 323.9 251 66.5
BolC8t51383H Brassica oleracea HOM05D000561 ORTHO05D008162 2.0e-86 323.2 251 66.5
Aa31LG10G9880 Aethionema arabicum HOM05D000561 ORTHO05D008162 2.6e-86 322.8 271 65.3
C08p38080 Brassica napus HOM05D000561 ORTHO05D008162 2.6e-86 322.8 251 66.5
Zm00001eb006450 Zea mays HOM05D000561 ORTHO05D008162 3.3e-86 322.4 238 67.6
Os03g0186100 Oryza sativa ssp. japonica HOM05D000561 ORTHO05D008162 4.4e-86 322.0 240 67.1
BraA09t40923Z Brassica rapa HOM05D000561 ORTHO05D008162 1.7e-85 320.1 251 66.1
Lsat_1_v5_gn_1_20480 Lactuca sativa HOM05D000561 ORTHO05D008162 8.2e-85 317.8 254 65.0
BcaB08g35302 Brassica carinata HOM05D000561 ORTHO05D008162 1.1e-84 317.4 244 67.6
SGA_v2.0_scaffold71G24043 Striga asiatica HOM05D000561 ORTHO05D008162 1.2e-83 313.9 245 65.7
EL10Ac1g01805 Beta vulgaris HOM05D000561 ORTHO05D008162 1.0e-82 310.8 270 63.0
HPP92_011186 Vanilla planifolia HOM05D000561 ORTHO05D008162 5.0e-82 308.5 275 61.1
BcaC07g40815 Brassica carinata HOM05D000561 ORTHO05D008162 1.1e-81 307.4 251 64.5
Migut.O00512 Erythranthe guttata HOM05D000561 ORTHO05D008162 4.2e-81 305.4 302 55.6
Thhalv10001252m.g Eutrema salsugineum HOM05D000561 ORTHO05D008162 2.1e-80 303.1 271 63.8
VMungo1309G1588 Vigna mungo HOM05D000561 ORTHO05D008162 2.7e-80 302.8 234 67.5
Cpa.g.sc64.2 Carica papaya HOM05D000561 ORTHO05D008162 6.8e-79 298.1 191 78.0
Lj4A51T47 Lonicera japonica HOM05D000561 ORTHO05D008162 7.5e-78 294.7 195 76.4
ATR0087G004 Amborella trichopoda HOM05D000561 ORTHO05D008162 6.3e-77 291.6 216 66.7
Hund26617 Selenicereus undatus HOM05D000561 ORTHO05D008162 1.6e-75 287.0 388 45.9
Glyma.04G037000 Glycine max HOM05D000561 ORTHO05D008162 1.1e-73 280.8 266 60.5
Ah.06g192790 Amaranthus hybridus HOM05D000561 ORTHO05D008162 3.4e-70 269.2 308 53.2
AUR62022458 Chenopodium quinoa HOM05D000561 ORTHO05D008162 1.3e-69 267.3 230 64.3
SEGI_40608 Sequoiadendron giganteum HOM05D000561 ORTHO05D008162 7.0e-68 261.5 214 60.3
Pp3c9_18350 Physcomitrium patens HOM05D000561 ORTHO05D008162 2.3e-66 256.5 248 51.2
AagrBONN_evm.TU.Sc2ySwM_228.1283 Anthoceros agrestis HOM05D000561 ORTHO05D008162 1.1e-65 254.2 235 55.3
ECA247G1201 Erigeron canadensis HOM05D000561 ORTHO05D000514 4.3e-65 252.3 181 68.5
SHI08313 Sapria himalayana HOM05D000561 ORTHO05D008162 1.2e-64 250.8 241 57.3
AUR62040067 Chenopodium quinoa HOM05D000561 ORTHO05D008162 1.2e-62 244.2 290 51.7
Mapoly0101s0072 Marchantia polymorpha HOM05D000561 ORTHO05D008162 4.4e-62 242.3 249 52.2
Carub.0004s0671 Capsella rubella HOM05D000561 ORTHO05D008162 5.4e-60 235.3 284 52.5
Sc26g0003980 Simmondsia chinensis HOM05D000561 ORTHO05D008162 7.0e-60 235.0 196 68.9
SMO367G0032 Selaginella moellendorffii HOM05D000561 ORTHO05D008162 1.3e-58 230.7 257 49.4
CBR_g12178 Chara braunii HOM05D000561 ORTHO05D008162 4.4e-54 215.7 265 44.9
Cre09.g409100 Chlamydomonas reinhardtii HOM05D000561 ORTHO05D008162 2.9e-53 213.0 251 48.2
CDE10G0258 Ceratophyllum demersum HOM05D000561 ORTHO05D008162 1.4e-52 210.7 172 63.4
arahy.Tifrunner.gnm1.ann1.96H4RR Arachis hypogaea HOM05D000561 ORTHO05D008162 4.1e-52 209.1 144 75.0
Migut.N02692 Erythranthe guttata HOM05D000561 ORTHO05D008162 4.3e-49 199.1 164 62.2
MCO15G161 Micromonas commoda HOM05D000561 ORTHO05D008162 1.1e-47 194.5 236 45.3
unitig_32.g11128 Utricularia gibba HOM05D000561 ORTHO05D008162 1.3e-42 177.6 125 67.2
PRCOL_00005348 Prasinoderma coloniale HOM05D000561 ORTHO05D008162 4.3e-41 172.6 240 42.5
SGA_v2.0_scaffold217G42442 Striga asiatica HOM05D000561 ORTHO05D008162 5.4e-36 155.6 123 64.2
Lsat_1_v5_gn_2_45600 Lactuca sativa HOM05D000561 ORTHO05D008162 5.6e-33 145.6 188 45.2
Lsat_1_v5_gn_5_145360 Lactuca sativa HOM05D000561 ORTHO05D008162 8.1e-32 141.7 161 50.3
SGA_v2.0_scaffold217G42441 Striga asiatica HOM05D000561 ORTHO05D008162 4.0e-23 112.8 72 69.4
Lsat_1_v5_gn_5_39421 Lactuca sativa HOM05D000487 ORTHO05D048384 3.4e-14 83.2 64 62.5
PGSC0003DMG400030254 Solanum tuberosum HOM05D000561 ORTHO05D008162 1.5e-06 57.8 52 61.5


User provided reference genes

Program Settings