Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g34660 Fragaria vesca HOM05D006157 ORTHO05D007826 1.1e-119 433.3 232 100.0
FAN20G0621 Fragaria x ananassa HOM05D006157 ORTHO05D007826 4.7e-113 411.4 233 94.8
FAN27G0611 Fragaria x ananassa HOM05D006157 ORTHO05D007826 2.3e-112 409.1 233 95.7
FAN15G3536 Fragaria x ananassa HOM05D006157 ORTHO05D007826 9.7e-111 403.7 233 89.7
RcHm_v2.0_Chr6g0307431 Rosa chinensis HOM05D006157 ORTHO05D007826 1.3e-99 366.7 224 82.6
Prupe.1G438800 Prunus persica HOM05D006157 ORTHO05D007826 1.3e-67 260.4 211 69.2
MD15G1085000 Malus domestica HOM05D006157 ORTHO05D007826 3.1e-64 249.2 210 67.6
MD08G1103700 Malus domestica HOM05D006157 ORTHO05D007826 2.9e-62 242.7 210 71.4
Duzib116G0710 Durio zibethinus HOM05D006157 ORTHO05D007826 8.4e-54 214.5 217 56.7
CiPaw.15G061800 Carya illinoinensis HOM05D006157 ORTHO05D007826 1.4e-53 213.8 213 62.0
Cfa018525 Carpinus fangiana HOM05D006157 ORTHO05D007826 2.4e-53 213.0 215 57.2
Potri.002G127800 Populus trichocarpa HOM05D006157 ORTHO05D007826 2.4e-53 213.0 214 57.0
QL02p005407 Quercus lobata HOM05D006157 ORTHO05D007826 3.2e-53 212.6 210 54.8
Sabra14G0022700 Salix brachista HOM05D006157 ORTHO05D007826 1.3e-51 207.2 213 55.4
Potri.014G032300 Populus trichocarpa HOM05D006157 ORTHO05D007826 1.7e-51 206.8 212 57.5
Haze_17545 Corylus avellana HOM05D006157 ORTHO05D007826 2.3e-51 206.5 216 56.5
Haze_17554 Corylus avellana HOM05D006157 ORTHO05D007826 2.3e-51 206.5 216 56.5
TWI56G1258 Tripterygium wilfordii HOM05D006157 ORTHO05D007826 2.5e-50 203.0 213 51.6
Ciclev10002442m.g Citrus clementina HOM05D006157 ORTHO05D007826 9.6e-50 201.1 224 52.2
Atru.chr13.647 Acer truncatum HOM05D006157 ORTHO05D007826 2.8e-49 199.5 224 53.6
Cpa.g.c24415.4 Carica papaya HOM05D006157 ORTHO05D007826 7.6e-47 191.4 217 51.2
Gohir.D06G015100 Gossypium hirsutum HOM05D006157 ORTHO05D007826 7.6e-47 191.4 217 49.8
Psat6g012720 Pisum sativum HOM05D006157 ORTHO05D007826 9.9e-47 191.0 210 54.3
Gohir.A06G017000 Gossypium hirsutum HOM05D006157 ORTHO05D007826 1.3e-46 190.7 217 49.3
Gorai.010G017900 Gossypium raimondii HOM05D006157 ORTHO05D007826 1.3e-46 190.7 217 49.3
Manes.05G171900 Manihot esculenta HOM05D006157 ORTHO05D007826 2.9e-46 189.5 211 56.9
Manes.05G171901 Manihot esculenta HOM05D006157 ORTHO05D007826 2.9e-46 189.5 211 56.9
CANSAT54G0006 Cannabis sativa HOM05D006157 ORTHO05D007826 8.4e-46 188.0 216 51.4
MELO3C010885.2 Cucumis melo HOM05D006157 ORTHO05D007826 1.4e-45 187.2 201 53.2
Medtr1g019800 Medicago truncatula HOM05D006157 ORTHO05D007826 1.9e-45 186.8 212 53.8
Sed0015883 Sechium edule HOM05D006157 ORTHO05D007826 1.9e-45 186.8 201 50.7
CsaV3_2G028070 Cucumis sativus L. HOM05D006157 ORTHO05D007826 2.4e-45 186.4 201 53.2
TPR.G13684 Trifolium pratense HOM05D006157 ORTHO05D007826 4.2e-45 185.7 212 53.8
Manes.18G032700 Manihot esculenta HOM05D006157 ORTHO05D007826 9.3e-45 184.5 211 51.7
Sed0006561 Sechium edule HOM05D006157 ORTHO05D007826 1.2e-44 184.1 201 51.2
Ca_13302_v3 Cicer arietinum L. HOM05D006157 ORTHO05D007826 3.5e-44 182.6 208 50.5
Actinidia23263 Actinidia chinensis HOM05D006157 ORTHO05D007826 4.6e-44 182.2 225 48.4
Hma1.2p1_0718F.1_g208450 Hydrangea macrophylla HOM05D006157 ORTHO05D007826 2.3e-43 179.9 213 51.2
Gohir.D02G092100 Gossypium hirsutum HOM05D006157 ORTHO05D007826 1.3e-41 174.1 216 47.7
Gorai.005G103500 Gossypium raimondii HOM05D006157 ORTHO05D007826 1.3e-41 174.1 216 47.7
ClCG08G015710 Citrullus lanatus HOM05D006157 ORTHO05D007826 2.8e-41 172.9 194 52.6
CSS0004131 Camellia sinensis var. sinensis HOM05D006157 ORTHO05D007826 3.7e-41 172.6 222 44.1
Lj5g0002869 Lotus japonicus HOM05D006157 ORTHO05D007826 3.7e-41 172.6 214 51.9
Gohir.A03G079324 Gossypium hirsutum HOM05D006157 ORTHO05D007826 8.1e-41 171.4 216 47.2
vmacro21540 Vaccinium macrocarpon HOM05D006157 ORTHO05D007826 3.1e-40 169.5 219 47.0
Peaxi162Scf00064g00125 Petunia axillaris HOM05D006157 ORTHO05D007826 5.3e-40 168.7 201 48.3
Nitab4.5_0000686g0050 Nicotiana tabacum HOM05D006157 ORTHO05D007826 6.9e-40 168.3 204 45.1
Nitab4.5_0001101g0070 Nicotiana tabacum HOM05D006157 ORTHO05D007826 6.9e-40 168.3 200 45.5
GSVIVG01009525001 Vitis vinifera HOM05D006157 ORTHO05D007826 6.9e-40 168.3 215 52.1
Thecc.08G011200 Theobroma cacao HOM05D006157 ORTHO05D007826 1.5e-39 167.2 157 56.1
FvH4_2g34701 Fragaria vesca HOM05D006157 ORTHO05D007826 4.5e-39 165.6 114 86.8
Eucgr.F00242 Eucalyptus grandis HOM05D006157 ORTHO05D007826 5.8e-39 165.2 213 48.8
Lalb_Chr14g0368791 Lupinus albus HOM05D006157 ORTHO05D007826 2.9e-38 162.9 205 49.8
Nitab4.5_0000453g0220 Nicotiana tabacum HOM05D006157 ORTHO05D007890 4.9e-38 162.2 198 50.5
Dinv35975 Davidia involucrata HOM05D006157 ORTHO05D007826 1.1e-37 161.0 224 45.1
PGR083G2028 Punica granatum HOM05D006157 ORTHO05D007826 2.4e-37 159.8 216 44.4
Lj4C53T12 Lonicera japonica HOM05D006157 ORTHO05D007826 1.2e-36 157.5 235 43.0
TAR628G1181 Trochodendron aralioides HOM05D006157 ORTHO05D007826 2.1e-36 156.8 211 44.5
VMungo1309G0335 Vigna mungo HOM05D006157 ORTHO05D007826 2.1e-36 156.8 214 43.9
PGSC0003DMG400036180 Solanum tuberosum HOM05D006157 ORTHO05D007826 1.3e-35 154.1 208 42.3
Glyma.04G037500 Glycine max HOM05D006157 ORTHO05D007826 2.3e-35 153.3 216 45.4
Phvul.009G063700 Phaseolus vulgaris HOM05D006157 ORTHO05D007826 8.7e-35 151.4 212 42.0
Nitab4.5_0004184g0060 Nicotiana tabacum HOM05D006157 ORTHO05D007890 1.5e-34 150.6 202 44.1
EL10Ac1g01781 Beta vulgaris HOM05D006157 ORTHO05D007826 2.5e-34 149.8 228 42.1
Sopen04g032780 Solanum pennellii HOM05D006157 ORTHO05D007826 2.5e-34 149.8 208 41.8
THA.LOC104806945 Tarenaya hassleriana HOM05D006157 ORTHO05D007826 3.3e-34 149.4 210 43.3
Lsat_1_v5_gn_4_124041 Lactuca sativa HOM05D006157 ORTHO05D007826 7.4e-34 148.3 222 41.0
Nn5g30225 Nelumbo nucifera HOM05D006157 ORTHO05D007826 7.4e-34 148.3 206 44.7
Peaxi162Scf00528g00414 Petunia axillaris HOM05D006157 ORTHO05D007826 9.6e-34 147.9 197 45.2
AUR62039307 Chenopodium quinoa HOM05D006157 ORTHO05D007826 2.1e-33 146.7 223 40.8
AUR62022432 Chenopodium quinoa HOM05D006157 ORTHO05D007826 2.8e-33 146.4 217 42.4
Cc10_g04340 Coffea canephora HOM05D006157 ORTHO05D007826 4.8e-33 145.6 231 40.7
Glyma.06G038400 Glycine max HOM05D006157 ORTHO05D007826 8.2e-33 144.8 219 42.9
Phvul.001G020800 Phaseolus vulgaris HOM05D006157 ORTHO05D007826 1.4e-32 144.1 206 43.7
MSTRG.25101 Avicennia marina HOM05D006157 ORTHO05D007826 1.8e-32 143.7 221 43.0
Glyma.17G243500 Glycine max HOM05D006157 ORTHO05D007826 2.4e-32 143.3 212 45.3
Rhsim06G0048100 Rhododendron simsii HOM05D006157 ORTHO05D007826 1.2e-31 141.0 209 40.7
VMungo0647G0691 Vigna mungo HOM05D006157 ORTHO05D007826 5.8e-31 138.7 209 45.0
SalBow8G3379 Salvia bowleyana HOM05D006157 ORTHO05D007826 1.0e-30 137.9 217 43.3
Sopen12g030790 Solanum pennellii HOM05D006157 ORTHO05D007826 2.2e-30 136.7 199 47.2
Glyma.14G081800 Glycine max HOM05D006157 ORTHO05D007826 1.1e-29 134.4 212 43.4
Solyc04g079170.4 Solanum lycopersicum HOM05D006157 ORTHO05D007826 2.5e-29 133.3 202 40.1
Ah.05g168840 Amaranthus hybridus HOM05D006157 ORTHO05D007826 5.5e-29 132.1 185 41.6
ECA232G2668 Erigeron canadensis HOM05D006157 ORTHO05D007826 7.1e-29 131.7 212 40.1
HanXRQChr09g0267931 Helianthus annuus HOM05D006157 ORTHO05D007826 7.1e-29 131.7 219 38.8
DCAR_011305 Daucus carota HOM05D005231 ORTHO05D006387 2.7e-28 129.8 149 47.7
Solyc12g088890.3 Solanum lycopersicum HOM05D006157 ORTHO05D007890 2.7e-28 129.8 171 50.9
Nn1g05836 Nelumbo nucifera HOM05D006157 ORTHO05D007826 1.8e-27 127.1 205 40.0
SGA_v2.0_scaffold14G07032 Striga asiatica HOM05D006157 ORTHO05D007826 5.1e-27 125.6 213 39.9
BcaB07g33839 Brassica carinata HOM05D006157 ORTHO05D007826 4.3e-26 122.5 195 40.0
MBI02_g17343_MAGBIO Magnolia biondii HOM05D006157 ORTHO05D007826 3.7e-25 119.4 204 35.8
Sp1g34500 Schrenkiella parvula HOM05D006157 ORTHO05D007826 3.7e-25 119.4 190 39.5
SpUn0102_0020 Schrenkiella parvula HOM05D006157 ORTHO05D007826 3.7e-25 119.4 190 39.5
CARHR037020 Cardamine hirsuta HOM05D006157 ORTHO05D007826 4.8e-25 119.0 193 40.9
Migut.C00597 Erythranthe guttata HOM05D006157 ORTHO05D007826 1.4e-24 117.5 201 38.3
Aa31sc924G20 Aethionema arabicum HOM05D006157 ORTHO05D007826 1.8e-24 117.1 210 37.6
A10p06400 Brassica napus HOM05D006157 ORTHO05D007826 1.2e-23 114.4 198 39.4
Thhalv10011797m.g Eutrema salsugineum HOM05D006157 ORTHO05D007826 1.2e-23 114.4 196 39.3
COL.COLO4_26474 Corchorus olitorius HOM05D006157 ORTHO05D007826 2.0e-23 113.6 210 37.1
BolSC99t61279H Brassica oleracea HOM05D006157 ORTHO05D007826 2.6e-23 113.2 195 37.4
Migut.N02699 Erythranthe guttata HOM05D006157 ORTHO05D007826 5.9e-23 112.1 206 36.9
AT1G47410 Arabidopsis thaliana HOM05D006157 ORTHO05D007826 2.2e-22 110.2 200 37.5
C06p01910 Brassica napus HOM05D006157 ORTHO05D007826 2.2e-22 110.2 195 36.9
Aqoxy6G01361 Aquilegia oxysepala HOM05D006157 ORTHO05D007826 2.9e-22 109.8 211 37.4
PGSC0003DMG400015419 Solanum tuberosum HOM05D006157 ORTHO05D007826 6.5e-22 108.6 136 43.4
Carub.0001s3622 Capsella rubella HOM05D006157 ORTHO05D007826 8.5e-22 108.2 198 35.9
AUR62019555 Chenopodium quinoa HOM05D006157 ORTHO05D007826 8.5e-22 108.2 159 42.8
PSO541G3363 Papaver somniferum HOM05D006157 ORTHO05D007826 1.9e-21 107.1 218 32.6
AL1G53700 Arabidopsis lyrata HOM05D006157 ORTHO05D007826 4.2e-21 105.9 200 37.0
Actinidia22616 Actinidia chinensis HOM05D006157 ORTHO05D007826 1.2e-20 104.4 168 42.9
Sc02g0007020 Simmondsia chinensis HOM05D006157 ORTHO05D007826 7.9e-20 101.7 225 41.8
arahy.Tifrunner.gnm1.ann1.HUL940 Arachis hypogaea HOM05D006157 ORTHO05D007826 4.3e-18 95.9 222 39.2
arahy.Tifrunner.gnm1.ann1.R9H0NA Arachis hypogaea HOM05D006157 ORTHO05D007826 4.3e-18 95.9 222 39.2
BcaC08g42947 Brassica carinata HOM05D006157 ORTHO05D007826 7.4e-18 95.1 91 52.7
PSO675G5393 Papaver somniferum HOM05D006157 ORTHO05D007826 9.1e-16 88.2 158 34.2
Duzib093G2157 Durio zibethinus HOM05D006157 ORTHO05D007826 3.8e-14 82.8 108 44.4
ATR0100G006 Amborella trichopoda HOM05D006157 ORTHO05D007826 1.1e-10 71.2 156 34.6
ATR0100G061 Amborella trichopoda HOM05D006157 ORTHO05D007826 2.0e-10 70.5 158 35.4
unitig_22.g6773 Utricularia gibba HOM05D006157 ORTHO05D007826 3.3e-10 69.7 168 33.9
Os09g0460100 Oryza sativa ssp. japonica HOM05D006157 ORTHO05D007826 1.5e-07 60.8 236 27.5
CSS0005922 Camellia sinensis var. sinensis HOM05D006157 ORTHO05D007826 3.4e-07 59.7 154 31.2
Zm00001eb100900 Zea mays HOM05D006157 ORTHO05D007826 3.4e-07 59.7 245 25.7
Zm00001eb315050 Zea mays HOM05D006157 ORTHO05D007826 3.4e-07 59.7 236 24.2
HPP92_027520 Vanilla planifolia HOM05D006157 ORTHO05D007826 1.7e-06 57.4 79 41.8
SalBow8G4867 Salvia bowleyana HOM05D006157 ORTHO05D007826 3.8e-06 56.2 33 72.7


User provided reference genes

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