Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g34610 Fragaria vesca HOM05D004259 ORTHO05D005014 1.9e-209 732.3 364 100.0
FAN15G2861 Fragaria x ananassa HOM05D001625 ORTHO05D005014 2.5e-206 721.8 362 98.6
FAN20G1942 Fragaria x ananassa HOM05D004259 ORTHO05D005014 3.7e-205 718.0 364 97.3
RcHm_v2.0_Chr6g0307691 Rosa chinensis HOM05D004259 ORTHO05D005014 1.0e-202 709.9 364 96.2
FAN27G2417 Fragaria x ananassa HOM05D004259 ORTHO05D005014 1.3e-189 666.4 364 92.0
MD08G1103300 Malus domestica HOM05D004259 ORTHO05D005014 1.4e-167 593.2 364 79.4
Atru.chr8.1940 Acer truncatum HOM05D004259 ORTHO05D005014 1.4e-164 583.2 364 76.1
CANSAT01G2810 Cannabis sativa HOM05D004259 ORTHO05D005014 2.1e-160 569.3 362 74.9
Ciclev10012027m.g Citrus clementina HOM05D004259 ORTHO05D005014 1.8e-159 566.2 364 74.7
Cfa018528 Carpinus fangiana HOM05D004259 ORTHO05D005014 1.2e-158 563.5 367 73.6
PSO675G0522 Papaver somniferum HOM05D004259 ORTHO05D005014 4.4e-158 561.6 363 74.7
Manes.08G078200 Manihot esculenta HOM05D004259 ORTHO05D005014 2.2e-157 559.3 364 73.6
CSS0003524 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 4.8e-157 558.1 364 73.4
Duzib128G0657 Durio zibethinus HOM05D004259 ORTHO05D005014 1.1e-156 557.0 361 73.1
Cpa.g.sc973.4 Carica papaya HOM05D004259 ORTHO05D005014 2.4e-156 555.8 364 75.3
Potri.003G094800 Populus trichocarpa HOM05D004259 ORTHO05D005014 3.1e-156 555.4 364 73.1
PSO339G6255 Papaver somniferum HOM05D004259 ORTHO05D005014 5.9e-155 551.2 363 73.3
PSO541G1765 Papaver somniferum HOM05D004259 ORTHO05D005014 1.0e-154 550.4 363 73.0
Gohir.D11G345100 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.3e-154 550.1 362 72.1
Sed0023883 Sechium edule HOM05D004259 ORTHO05D005014 1.3e-154 550.1 361 72.3
Gorai.007G375500 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.7e-154 549.7 362 72.1
CiPaw.15G061500 Carya illinoinensis HOM05D004259 ORTHO05D005014 2.9e-154 548.9 358 73.5
Gohir.A11G326200 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.9e-154 548.9 362 72.1
Thecc.05G042500 Theobroma cacao HOM05D004259 ORTHO05D005014 3.8e-154 548.5 361 72.9
TAR376G0692 Trochodendron aralioides HOM05D004259 ORTHO05D005014 2.5e-153 545.8 363 71.9
CsaV3_2G028020 Cucumis sativus L. HOM05D004259 ORTHO05D005014 4.7e-152 541.6 362 71.8
MELO3C010882.2 Cucumis melo HOM05D004259 ORTHO05D005014 1.4e-151 540.0 362 71.3
QL02p005360 Quercus lobata HOM05D004259 ORTHO05D005014 1.8e-151 539.7 419 65.2
Migut.N02703 Erythranthe guttata HOM05D004259 ORTHO05D005014 3.0e-151 538.9 364 70.3
ClCG08G015740 Citrullus lanatus HOM05D004259 ORTHO05D005014 1.5e-150 536.6 372 69.4
MSTRG.24327 Avicennia marina HOM05D004259 ORTHO05D005014 6.3e-149 531.2 364 69.2
Aqoxy7G01016 Aquilegia oxysepala HOM05D004259 ORTHO05D005014 1.1e-148 530.4 362 71.8
Peaxi162Scf00162g00029 Petunia axillaris HOM05D004259 ORTHO05D005014 2.4e-148 529.3 372 66.9
Lj3C736T6 Lonicera japonica HOM05D004259 ORTHO05D005014 9.2e-148 527.3 364 70.3
Haze_17552 Corylus avellana HOM05D004259 ORTHO05D005014 1.2e-147 526.9 369 70.7
HanXRQChr04g0103531 Helianthus annuus HOM05D004259 ORTHO05D005014 1.2e-147 526.9 364 69.0
AUR62039303 Chenopodium quinoa HOM05D004259 ORTHO05D005014 2.7e-147 525.8 364 68.1
Nn1g05830 Nelumbo nucifera HOM05D004259 ORTHO05D005014 4.5e-147 525.0 361 69.8
Peaxi162Scf00929g00211 Petunia axillaris HOM05D004259 ORTHO05D005014 4.5e-147 525.0 372 67.2
MBI02_g17334_MAGBIO Magnolia biondii HOM05D004259 ORTHO05D005014 5.9e-147 524.6 393 65.4
THA.LOC104806568 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 1.7e-146 523.1 361 69.3
Oeu018211.1 Olea europaea HOM05D004259 ORTHO05D005014 6.6e-146 521.2 376 66.8
BraA05t19805Z Brassica rapa HOM05D004259 ORTHO05D005014 8.6e-146 520.8 363 67.5
AUR62022427 Chenopodium quinoa HOM05D004259 ORTHO05D005014 2.5e-145 519.2 364 67.0
Lsat_1_v5_gn_1_20280 Lactuca sativa HOM05D004259 ORTHO05D005014 2.5e-145 519.2 364 68.1
EL10Ac3g06655 Beta vulgaris HOM05D004259 ORTHO05D005014 3.3e-145 518.8 364 66.8
Glyma.14G082100 Glycine max HOM05D004259 ORTHO05D005014 5.6e-145 518.1 366 68.9
A05p08400 Brassica napus HOM05D004259 ORTHO05D005014 1.6e-144 516.5 363 67.2
PGSC0003DMG400027003 Solanum tuberosum HOM05D004259 ORTHO05D005014 2.8e-144 515.8 362 67.1
Sabra03G0064000 Salix brachista HOM05D004259 ORTHO05D005014 3.6e-144 515.4 357 69.7
Sopen06g029870 Solanum pennellii HOM05D004259 ORTHO05D005014 6.1e-144 514.6 362 66.9
Phvul.001G021100 Phaseolus vulgaris HOM05D004259 ORTHO05D005014 1.0e-143 513.8 365 68.2
Solyc06g073510.3 Solanum lycopersicum HOM05D004259 ORTHO05D005014 1.0e-143 513.8 362 66.6
CAN.G65.190 Capsicum annuum HOM05D004259 ORTHO05D005014 1.4e-143 513.5 369 66.4
Sabra11G0061200 Salix brachista HOM05D004259 ORTHO05D005014 1.8e-143 513.1 359 69.1
BolC4t22638H Brassica oleracea HOM05D004259 ORTHO05D005014 2.3e-143 512.7 363 66.9
BcaB02g09273 Brassica carinata HOM05D004259 ORTHO05D005014 4.0e-143 511.9 363 66.7
THA.LOC104809222 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 5.2e-143 511.5 365 67.1
Lj5g0003666 Lotus japonicus HOM05D004259 ORTHO05D005014 8.9e-143 510.8 357 67.5
C04p10400 Brassica napus HOM05D004259 ORTHO05D005014 1.5e-142 510.0 363 66.7
BcaC02g11869 Brassica carinata HOM05D004259 ORTHO05D005014 2.0e-142 509.6 363 66.9
Thhalv10016846m.g Eutrema salsugineum HOM05D004259 ORTHO05D005014 3.4e-142 508.8 363 66.9
Rhsim10G0028600 Rhododendron simsii HOM05D004259 ORTHO05D005014 7.5e-142 507.7 364 69.5
VMungo0647G0522 Vigna mungo HOM05D004259 ORTHO05D005014 9.8e-142 507.3 365 68.2
PGR031G2227 Punica granatum HOM05D004259 ORTHO05D005014 1.3e-141 506.9 362 67.4
Ca_01811_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 1.7e-141 506.5 353 69.4
Ca_29610_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 1.7e-141 506.5 353 69.4
CARHR132030 Cardamine hirsuta HOM05D004259 ORTHO05D005014 2.2e-141 506.1 363 65.8
Lalb_Chr19g0129351 Lupinus albus HOM05D004259 ORTHO05D005014 2.9e-141 505.8 362 67.1
Carub.0004s1948 Capsella rubella HOM05D004259 ORTHO05D005014 3.7e-141 505.4 363 66.1
Sp4g19910 Schrenkiella parvula HOM05D004259 ORTHO05D005014 1.1e-140 503.8 363 66.1
Nitab4.5_0002664g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 4.1e-140 501.9 396 62.6
Eucgr.F00239 Eucalyptus grandis HOM05D004259 ORTHO05D005014 1.2e-139 500.4 359 66.0
ATR0100G023 Amborella trichopoda HOM05D004259 ORTHO05D005014 1.6e-139 500.0 362 66.0
Dinv39327 Davidia involucrata HOM05D004259 ORTHO05D005014 2.7e-139 499.2 322 73.9
Nitab4.5_0000111g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 3.5e-139 498.8 381 63.5
MD15G1084600 Malus domestica HOM05D004259 ORTHO05D005014 4.6e-139 498.4 375 68.5
CDE10G1325 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 6.0e-139 498.0 355 67.3
Medtr1g019770 Medicago truncatula HOM05D004259 ORTHO05D005014 1.0e-138 497.3 350 69.1
TPR.G17553 Trifolium pratense HOM05D004259 ORTHO05D005014 1.7e-138 496.5 350 68.3
AL4G34050 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 2.3e-138 496.1 363 65.3
Nitab4.5_0002045g0130 Nicotiana tabacum HOM05D004259 ORTHO05D005014 5.0e-138 495.0 363 65.3
unitig_26.g10027 Utricularia gibba HOM05D004259 ORTHO05D005014 5.0e-138 495.0 362 65.7
Psat6g012600 Pisum sativum HOM05D004259 ORTHO05D005014 1.1e-137 493.8 350 68.0
TWI53G0519 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 2.5e-137 492.7 363 66.7
Peaxi162Scf00003g02311 Petunia axillaris HOM05D004259 ORTHO05D005014 6.2e-136 488.0 397 61.5
SalBow2G1152 Salvia bowleyana HOM05D004259 ORTHO05D005014 2.0e-134 483.0 389 60.7
SalBow2G2463 Salvia bowleyana HOM05D004259 ORTHO05D005014 9.8e-134 480.7 389 60.4
SalBow2G2012 Salvia bowleyana HOM05D004259 ORTHO05D005014 2.2e-133 479.6 389 60.2
AT2G37560 Arabidopsis thaliana HOM05D004259 ORTHO05D005014 3.7e-133 478.8 363 62.8
arahy.Tifrunner.gnm1.ann1.1PWX74 Arachis hypogaea HOM05D004259 ORTHO05D005014 1.4e-132 476.9 362 65.5
arahy.Tifrunner.gnm1.ann1.63NC9C Arachis hypogaea HOM05D004259 ORTHO05D005014 1.4e-132 476.9 362 65.5
Sc07g0003460 Simmondsia chinensis HOM05D004259 ORTHO05D005014 1.9e-132 476.5 317 70.3
Prupe.1G438300 Prunus persica HOM05D004259 ORTHO05D005014 9.2e-132 474.2 298 77.9
Os03g0184700 Oryza sativa ssp. japonica HOM05D004259 ORTHO05D005014 4.6e-131 471.9 355 61.7
Haze_17543 Corylus avellana HOM05D004259 ORTHO05D005014 7.8e-131 471.1 316 71.5
Zm00001eb248940 Zea mays HOM05D004259 ORTHO05D005014 1.5e-129 466.8 357 62.2
RcHm_v2.0_Chr6g0307531 Rosa chinensis HOM05D004259 ORTHO05D005014 1.9e-129 466.5 358 70.9
ECA247G2793 Erigeron canadensis HOM05D004259 ORTHO05D005014 9.5e-129 464.2 329 67.2
Cc10_g04310 Coffea canephora HOM05D004259 ORTHO05D005014 1.6e-128 463.4 364 61.8
CSS0037728 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 1.8e-127 459.9 364 62.9
GSVIVG01009522001 Vitis vinifera HOM05D004259 ORTHO05D005014 1.3e-125 453.8 315 70.2
SalBow3G4106 Salvia bowleyana HOM05D004259 ORTHO05D005014 3.2e-124 449.1 364 60.4
SGA_v2.0_scaffold204G41641 Striga asiatica HOM05D004259 ORTHO05D005014 2.1e-123 446.4 366 60.7
Nitab4.5_0004918g0050 Nicotiana tabacum HOM05D004259 ORTHO05D005014 5.6e-121 438.3 354 61.3
Glyma.17G243200 Glycine max HOM05D004259 ORTHO05D005014 2.4e-119 433.0 292 68.8
Rhsim07G0229700 Rhododendron simsii HOM05D004259 ORTHO05D005014 8.9e-119 431.0 332 64.8
Hma1.2p1_0718F.1_g208420 Hydrangea macrophylla HOM05D004259 ORTHO05D005014 4.9e-117 425.2 301 70.1
Ah.05g168820 Amaranthus hybridus HOM05D001625 ORTHO05D005014 2.7e-115 419.5 298 67.1
SalBow2G2610 Salvia bowleyana HOM05D004259 ORTHO05D005014 9.3e-108 394.4 389 53.2
vmacro04457 Vaccinium macrocarpon HOM05D004259 ORTHO05D005014 9.3e-108 394.4 364 57.4
SalBow2G0695 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.4e-103 380.6 287 64.1
SEGI_21568 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 5.8e-102 375.2 287 59.6
AagrBONN_evm.TU.Sc2ySwM_344.5209 Anthoceros agrestis HOM05D004259 ORTHO05D005014 2.9e-101 372.9 361 51.2
Actinidia29866 Actinidia chinensis HOM05D004259 ORTHO05D005014 4.9e-101 372.1 364 53.3
Pp3c18_14740 Physcomitrium patens HOM05D004259 ORTHO05D005014 4.2e-100 369.0 350 51.4
COL.COLO4_14836 Corchorus olitorius HOM05D004259 ORTHO05D005014 2.1e-96 356.7 361 52.1
SMO147G0302 Selaginella moellendorffii HOM05D004259 ORTHO05D005014 2.9e-93 346.3 339 50.1
Mapoly0106s0035 Marchantia polymorpha HOM05D004259 ORTHO05D005014 1.9e-92 343.6 319 51.4
SHI12655 Sapria himalayana HOM05D004259 ORTHO05D005014 1.9e-92 343.6 367 49.6
CBR_g6665 Chara braunii HOM05D004259 ORTHO05D005014 2.5e-92 343.2 336 49.1
TWI53G0792 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 9.3e-92 341.3 268 63.4
Rhsim10G0028100 Rhododendron simsii HOM05D004259 ORTHO05D005014 2.1e-83 313.5 221 71.0
HPP92_027219 Vanilla planifolia HOM05D004259 ORTHO05D005014 2.0e-62 243.8 152 71.7
MCO16G222 Micromonas commoda HOM05D004259 ORTHO05D005014 2.6e-57 226.9 328 37.5
CDE10G0377 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 9.4e-52 208.4 135 71.1
PRCOL_00004897 Prasinoderma coloniale HOM05D004259 ORTHO05D005014 9.4e-44 181.8 369 31.7
HPP92_027220 Vanilla planifolia HOM05D004259 ORTHO05D005014 5.9e-38 162.5 162 54.9
Gohir.D10G137766 Gossypium hirsutum HOM05D004259 ORTHO05D005014 9.5e-36 155.2 137 55.5
Cre03.g199400 Chlamydomonas reinhardtii HOM05D004259 ORTHO05D005014 8.0e-35 152.1 337 32.3
Nitab4.5_0000017g0120 Nicotiana tabacum HOM05D004259 ORTHO05D005014 1.7e-32 144.4 199 41.7
Aa31LG5G22990 Aethionema arabicum HOM05D004259 ORTHO05D005014 6.3e-32 142.5 138 53.6
AL4G34080 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 1.1e-31 141.7 103 66.0
Gohir.D12G080700 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.2e-30 138.3 87 74.7
Cc00_g16720 Coffea canephora HOM05D004259 ORTHO05D005014 1.6e-30 137.9 116 61.2
Gorai.005G118700 Gossypium raimondii HOM05D004259 ORTHO05D005014 2.9e-29 133.7 85 72.9
Gorai.011G277900 Gossypium raimondii HOM05D004259 ORTHO05D005014 2.9e-29 133.7 87 71.3
Gohir.D02G104501 Gossypium hirsutum HOM05D004259 ORTHO05D005014 6.6e-29 132.5 85 71.8
Gohir.D03G074850 Gossypium hirsutum HOM05D004259 ORTHO05D005014 5.2e-26 122.9 79 73.4
Cfa024619 Carpinus fangiana HOM05D004259 ORTHO05D005014 2.0e-25 120.9 351 25.9
Gohir.D01G124400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.6e-25 120.6 78 73.1
Gohir.D02G123750 Gossypium hirsutum HOM05D004259 ORTHO05D005014 5.8e-25 119.4 78 71.8
Actinidia38053 Actinidia chinensis HOM05D004259 ORTHO05D005014 7.5e-25 119.0 85 69.4
Gohir.D09G120150 Gossypium hirsutum HOM05D004259 ORTHO05D005014 9.8e-25 118.6 78 71.8
Gorai.005G130400 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.3e-24 118.2 78 71.8
Gorai.008G056700 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.7e-24 117.9 79 70.9
Gorai.004G133100 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.4e-23 114.8 78 69.2
PSO724G0286 Papaver somniferum HOM05D004259 ORTHO05D005014 1.6e-22 111.3 110 52.7
Gohir.D04G089650 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.7e-22 110.5 79 65.8
Gohir.D10G134400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 4.6e-22 109.8 70 71.4
PSO724G0742 Papaver somniferum HOM05D004259 ORTHO05D005014 4.6e-22 109.8 110 52.7
Gorai.012G099900 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.7e-21 107.8 79 63.3
Cc06_g20720 Coffea canephora HOM05D004259 ORTHO05D005014 5.0e-21 106.3 104 57.7
Aa31sc112G60 Aethionema arabicum HOM05D004259 ORTHO05D005014 2.5e-20 104.0 78 64.1
Gorai.006G043100 Gossypium raimondii HOM05D004259 ORTHO05D005014 9.5e-20 102.1 101 55.4
SEGI_22221 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 9.8e-17 92.0 76 59.2
Cc11_g02680 Coffea canephora HOM05D004259 ORTHO05D005014 1.1e-15 88.6 62 69.4
Gohir.D09G088725 Gossypium hirsutum HOM05D004259 ORTHO05D005014 7.8e-14 82.4 56 71.4
Sabra15G0136400 Salix brachista HOM05D004259 ORTHO05D004947 1.0e-13 82.0 67 64.2
EL10Ac4g08135 Beta vulgaris HOM05D004259 ORTHO05D005014 3.0e-13 80.5 45 80.0
Gorai.011G153000 Gossypium raimondii HOM05D004259 ORTHO05D005014 4.0e-10 70.1 90 44.4
Cc00_g00370 Coffea canephora HOM05D004259 ORTHO05D005014 3.4e-09 67.0 52 59.6
Gohir.D09G037800 Gossypium hirsutum HOM05D004259 ORTHO05D005014 9.9e-09 65.5 43 72.1
Gohir.D01G066700 Gossypium hirsutum HOM05D000706 ORTHO05D013538 2.9e-08 63.9 49 57.1
Gohir.D01G081300 Gossypium hirsutum HOM05D000706 ORTHO05D013538 6.4e-08 62.8 37 70.3
Gorai.007G356500 Gossypium raimondii HOM05D000706 ORTHO05D013538 8.4e-08 62.4 49 57.1
Gohir.D06G127100 Gossypium hirsutum HOM05D000706 ORTHO05D013538 1.1e-07 62.0 79 44.3
Gohir.D13G142000 Gossypium hirsutum HOM05D000706 ORTHO05D013538 1.1e-07 62.0 49 57.1
Gorai.010G148400 Gossypium raimondii HOM05D000706 ORTHO05D013538 1.1e-07 62.0 79 44.3
Gohir.D03G122500 Gossypium hirsutum HOM05D000706 ORTHO05D013538 1.4e-07 61.6 43 65.1
Cc01_g09720 Coffea canephora HOM05D004259 ORTHO05D005014 4.1e-07 60.1 43 65.1
Gohir.D06G138051 Gossypium hirsutum HOM05D000706 ORTHO05D013538 5.4e-07 59.7 37 67.6
Gohir.D09G037400 Gossypium hirsutum HOM05D000706 ORTHO05D013538 9.2e-07 58.9 79 39.2
Gohir.D09G143401 Gossypium hirsutum HOM05D000706 ORTHO05D013538 9.2e-07 58.9 49 55.1
Aa31LG5G23020 Aethionema arabicum HOM05D004259 ORTHO05D005014 1.2e-06 58.5 46 67.4
Sabra07G0018600 Salix brachista HOM05D004259 ORTHO05D003320 3.5e-06 57.0 60 51.7
Sabra18G0120100 Salix brachista HOM05D001081 ORTHO05D003320 3.5e-06 57.0 60 51.7
Cc02_g31720 Coffea canephora HOM05D004259 ORTHO05D005014 4.6e-06 56.6 42 61.9


User provided reference genes

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