Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g33990 Fragaria vesca HOM05D004702 ORTHO05D005505 1.5e-275 952.2 476 100.0
FAN24G1074 Fragaria x ananassa HOM05D004702 ORTHO05D005505 7.5e-275 949.9 476 99.6
FAN15G1938 Fragaria x ananassa HOM05D004702 ORTHO05D005505 1.6e-269 932.2 476 97.5
FAN20G1472 Fragaria x ananassa HOM05D004702 ORTHO05D005505 1.4e-268 929.1 476 97.5
FAN27G2110 Fragaria x ananassa HOM05D004702 ORTHO05D005505 3.4e-267 924.5 476 96.8
RcHm_v2.0_Chr6g0308391 Rosa chinensis HOM05D004702 ORTHO05D005505 1.5e-246 855.9 485 89.9
Prupe.1G431800 Prunus persica HOM05D004702 ORTHO05D005505 1.3e-173 613.6 475 69.3
MD08G1095800 Malus domestica HOM05D004702 ORTHO05D005505 7.7e-155 551.2 472 64.2
MD15G1078600 Malus domestica HOM05D004702 ORTHO05D005505 3.3e-153 545.8 456 64.0
CANSAT25G0849 Cannabis sativa HOM05D004702 ORTHO05D005505 5.2e-151 538.5 481 64.2
Ciclev10001048m.g Citrus clementina HOM05D004702 ORTHO05D005505 1.5e-145 520.4 481 60.9
Thecc.08G002800 Theobroma cacao HOM05D004702 ORTHO05D005505 8.9e-143 511.1 479 60.8
Potri.014G025000 Populus trichocarpa HOM05D004702 ORTHO05D005505 1.5e-142 510.4 459 62.3
Gorai.009G214400 Gossypium raimondii HOM05D004702 ORTHO05D005505 3.4e-142 509.2 484 60.3
Dinv35933 Davidia involucrata HOM05D004702 ORTHO05D005505 9.8e-142 507.7 462 60.8
Gohir.D05G207800 Gossypium hirsutum HOM05D004702 ORTHO05D005505 9.8e-142 507.7 484 60.1
Potri.002G123800 Populus trichocarpa HOM05D004702 ORTHO05D005505 9.8e-142 507.7 486 60.1
Manes.18G040500 Manihot esculenta HOM05D004702 ORTHO05D005505 1.3e-141 507.3 476 60.3
Manes.05G176200 Manihot esculenta HOM05D004702 ORTHO05D005505 2.2e-141 506.5 479 60.8
Duzib041G0633 Durio zibethinus HOM05D004702 ORTHO05D005505 3.2e-140 502.7 480 59.4
Duzib093G1440 Durio zibethinus HOM05D004702 ORTHO05D005505 3.2e-140 502.7 475 60.4
TWI56G0769 Tripterygium wilfordii HOM05D004702 ORTHO05D005505 1.6e-139 500.4 434 61.8
Sabra02G0097200 Salix brachista HOM05D004702 ORTHO05D005505 4.6e-139 498.8 471 58.8
Gohir.A05G204600 Gossypium hirsutum HOM05D004702 ORTHO05D005505 7.8e-139 498.0 484 59.5
COL.COLO4_03654 Corchorus olitorius HOM05D004702 ORTHO05D005505 8.6e-138 494.6 500 57.8
Eucgr.F00191 Eucalyptus grandis HOM05D004702 ORTHO05D005505 1.5e-137 493.8 447 62.2
TAR376G0323 Trochodendron aralioides HOM05D004702 ORTHO05D005505 2.3e-135 486.5 484 58.1
TAR381G0178 Trochodendron aralioides HOM05D004702 ORTHO05D005505 1.5e-134 483.8 449 59.2
CSS0001222 Camellia sinensis var. sinensis HOM05D004702 ORTHO05D005505 2.6e-134 483.0 463 59.2
Sabra14G0017000 Salix brachista HOM05D004702 ORTHO05D005505 5.8e-134 481.9 481 58.6
Cpa.g.sc21.167 Carica papaya HOM05D004702 ORTHO05D005505 2.9e-133 479.6 479 57.2
Hma1.2p1_0360F.1_g135770 Hydrangea macrophylla HOM05D004702 ORTHO05D005505 1.9e-132 476.9 480 57.3
Cc10_g04740 Coffea canephora HOM05D004702 ORTHO05D005505 3.2e-132 476.1 473 57.5
QL02p004185 Quercus lobata HOM05D004702 ORTHO05D005505 1.3e-130 470.7 486 57.6
Nitab4.5_0000287g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 2.1e-128 463.4 452 58.8
Oeu009775.1 Olea europaea HOM05D004702 ORTHO05D005505 2.1e-128 463.4 478 56.1
Dinv39282 Davidia involucrata HOM05D004702 ORTHO05D005505 2.3e-127 459.9 437 58.1
Nitab4.5_0005129g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 4.0e-127 459.1 452 58.4
Oeu054792.1 Olea europaea HOM05D004702 ORTHO05D005505 1.2e-126 457.6 480 55.4
Atru.BG.237.p Acer truncatum HOM05D004702 ORTHO05D005505 2.0e-126 456.8 387 64.3
Actinidia22651 Actinidia chinensis HOM05D004702 ORTHO05D005505 5.8e-126 455.3 491 55.0
VMungo1309G0408 Vigna mungo HOM05D004702 ORTHO05D005505 7.6e-126 454.9 497 53.7
arahy.Tifrunner.gnm1.ann1.WJS3XD Arachis hypogaea HOM05D004702 ORTHO05D005505 3.8e-125 452.6 513 52.8
CAN.G1030.31 Capsicum annuum HOM05D004702 ORTHO05D005505 3.8e-125 452.6 494 53.0
DCAR_012789 Daucus carota HOM05D004702 ORTHO05D005505 3.8e-125 452.6 436 58.0
arahy.Tifrunner.gnm1.ann1.L8L5ZS Arachis hypogaea HOM05D004702 ORTHO05D005505 4.9e-125 452.2 510 52.4
Phvul.009G067000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 7.1e-124 448.4 498 53.6
Lj4C62G3 Lonicera japonica HOM05D004702 ORTHO05D005505 2.1e-123 446.8 439 57.6
Glyma.06G042300 Glycine max HOM05D004702 ORTHO05D005505 2.7e-123 446.4 503 52.7
CiPaw.15G053800 Carya illinoinensis HOM05D004702 ORTHO05D005505 3.5e-123 446.0 482 55.4
PGR083G2110 Punica granatum HOM05D004702 ORTHO05D005505 3.5e-123 446.0 504 54.2
Gorai.010G022200 Gossypium raimondii HOM05D004702 ORTHO05D005505 1.0e-122 444.5 407 59.5
Lsat_1_v5_gn_1_22040 Lactuca sativa HOM05D004702 ORTHO05D005505 1.3e-122 444.1 490 53.1
Gohir.D06G019009 Gossypium hirsutum HOM05D004702 ORTHO05D005505 2.3e-122 443.4 407 59.2
Gohir.A06G020700 Gossypium hirsutum HOM05D004702 ORTHO05D005505 6.6e-122 441.8 407 59.0
Glyma.17G239800 Glycine max HOM05D004702 ORTHO05D005505 1.5e-121 440.7 492 54.7
VMungo0647G1506 Vigna mungo HOM05D004702 ORTHO05D005505 4.0e-119 432.6 486 52.1
Lj1g0008884 Lotus japonicus HOM05D004702 ORTHO05D005505 4.4e-118 429.1 483 53.2
Actinidia01089 Actinidia chinensis HOM05D004702 ORTHO05D005505 7.6e-118 428.3 453 56.1
Medtr3g102120 Medicago truncatula HOM05D004702 ORTHO05D005505 7.6e-118 428.3 480 51.9
TPR.G24175 Trifolium pratense HOM05D004702 ORTHO05D005505 1.3e-117 427.6 499 51.7
PGSC0003DMG400008008 Solanum tuberosum HOM05D004702 ORTHO05D005505 1.7e-117 427.2 450 56.2
CsaV3_4G034620 Cucumis sativus L. HOM05D004702 ORTHO05D005505 4.9e-117 425.6 478 52.9
Psat0s3591g0040 Pisum sativum HOM05D004702 ORTHO05D005505 1.1e-116 424.5 488 50.0
vmacro21496 Vaccinium macrocarpon HOM05D004702 ORTHO05D005505 2.4e-116 423.3 452 53.5
ECA247G0009 Erigeron canadensis HOM05D004702 ORTHO05D005505 2.7e-115 419.9 498 51.0
Aqoxy6G01249 Aquilegia oxysepala HOM05D004702 ORTHO05D005505 4.6e-115 419.1 481 50.1
MELO3C016778.2 Cucumis melo HOM05D004702 ORTHO05D005505 1.7e-114 417.2 480 52.9
ECA232G1346 Erigeron canadensis HOM05D004702 ORTHO05D005505 5.1e-114 415.6 396 55.8
Solyc04g078630.3 Solanum lycopersicum HOM05D004702 ORTHO05D005505 9.6e-113 411.4 464 52.4
SalBow7G0327 Salvia bowleyana HOM05D004702 ORTHO05D005505 1.3e-112 411.0 474 50.4
Ca_15936_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 2.8e-112 409.8 486 51.0
ClCG05G020100 Citrullus lanatus HOM05D004702 ORTHO05D005505 6.2e-112 408.7 479 51.6
HanXRQChr09g0267191 Helianthus annuus HOM05D004702 ORTHO05D005505 4.0e-111 406.0 419 55.4
DCAR_019426 Daucus carota HOM05D004702 ORTHO05D005505 6.9e-111 405.2 425 54.6
Medtr1g019040 Medicago truncatula HOM05D004702 ORTHO05D005505 9.0e-111 404.8 390 57.7
PSO675G4695 Papaver somniferum HOM05D004702 ORTHO05D005505 7.6e-110 401.7 484 48.1
Sopen04g032210 Solanum pennellii HOM05D004702 ORTHO05D005505 1.3e-109 401.0 413 55.7
Cfa009956 Carpinus fangiana HOM05D004702 ORTHO05D005505 1.7e-109 400.6 479 52.4
TPR.G3800 Trifolium pratense HOM05D004702 ORTHO05D005505 2.9e-109 399.8 492 49.4
HanXRQChr10g0286851 Helianthus annuus HOM05D004702 ORTHO05D005505 3.8e-109 399.4 489 48.7
Haze_18055 Corylus avellana HOM05D004702 ORTHO05D005505 1.9e-108 397.1 471 52.0
MSTRG.1063 Avicennia marina HOM05D004702 ORTHO05D005505 2.4e-108 396.7 438 52.3
Haze_18053 Corylus avellana HOM05D004702 ORTHO05D005505 7.1e-108 395.2 472 51.5
Glyma.14G085000 Glycine max HOM05D004702 ORTHO05D005505 7.1e-108 395.2 470 50.2
PSO541G5103 Papaver somniferum HOM05D004702 ORTHO05D005505 2.7e-107 393.3 482 46.9
Nn5g30368 Nelumbo nucifera HOM05D004702 ORTHO05D005505 7.9e-107 391.7 432 53.7
Peaxi162Scf00882g00017 Petunia axillaris HOM05D004702 ORTHO05D005505 5.1e-106 389.0 456 51.5
TAR625G0654 Trochodendron aralioides HOM05D004702 ORTHO05D005505 1.6e-104 384.0 408 54.4
Sc02g0007400 Simmondsia chinensis HOM05D004702 ORTHO05D005505 3.7e-104 382.9 389 55.3
HanXRQChr16g0509011 Helianthus annuus HOM05D004702 ORTHO05D005505 2.0e-102 377.1 395 53.9
HanXRQChr04g0103941 Helianthus annuus HOM05D004702 ORTHO05D005505 4.5e-102 375.9 482 46.5
Lj5g0017670 Lotus japonicus HOM05D004702 ORTHO05D005505 5.8e-102 375.6 414 52.9
Phvul.001G024000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 7.6e-102 375.2 342 59.4
Lalb_Chr14g0368541 Lupinus albus HOM05D004702 ORTHO05D005505 1.2e-99 367.9 476 47.5
Sed0014061 Sechium edule HOM05D004702 ORTHO05D005505 1.6e-99 367.5 465 48.4
MBI16_g04313_MAGBIO Magnolia biondii HOM05D004702 ORTHO05D005505 2.1e-99 367.1 493 47.7
Migut.C00543 Erythranthe guttata HOM05D004702 ORTHO05D005505 1.6e-96 357.5 500 44.8
AUR62035465 Chenopodium quinoa HOM05D004702 ORTHO05D005505 1.1e-95 354.8 436 47.9
THA.LOC104801428 Tarenaya hassleriana HOM05D004702 ORTHO05D005505 7.6e-94 348.6 497 44.7
Ah.05g167300 Amaranthus hybridus HOM05D004702 ORTHO05D005505 7.1e-92 342.0 423 46.3
EL10As7g23762 Beta vulgaris HOM05D004702 ORTHO05D005505 7.1e-92 342.0 402 49.0
SGA_v2.0_scaffold14G06974 Striga asiatica HOM05D004702 ORTHO05D005505 1.0e-90 338.2 477 44.2
Rhsim06G0053300 Rhododendron simsii HOM05D004702 ORTHO05D005505 1.1e-89 334.7 381 51.2
Hund05336 Selenicereus undatus HOM05D004702 ORTHO05D005505 2.8e-88 330.1 402 48.0
Ah.11g043030 Amaranthus hybridus HOM05D004702 ORTHO05D005505 4.5e-86 322.8 397 47.1
AL6G41200 Arabidopsis lyrata HOM05D004702 ORTHO05D005505 2.2e-85 320.5 493 42.6
Haze_18006 Corylus avellana HOM05D004702 ORTHO05D005505 2.9e-85 320.1 394 50.8
Carub.0006s2627 Capsella rubella HOM05D004702 ORTHO05D005505 4.2e-84 316.2 485 43.3
Ca_13276_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 6.1e-83 312.4 294 58.5
Thhalv10028638m.g Eutrema salsugineum HOM05D004702 ORTHO05D005505 1.0e-82 311.6 498 43.0
Aa31LG3G14060 Aethionema arabicum HOM05D004702 ORTHO05D005505 3.0e-82 310.1 494 40.9
BcaB01g01331 Brassica carinata HOM05D004702 ORTHO05D005505 8.7e-82 308.5 482 42.1
GSVIVG01009450001 Vitis vinifera HOM05D004702 ORTHO05D005505 3.7e-80 303.1 201 73.6
BraSC37t46123Z Brassica rapa HOM05D004702 ORTHO05D005505 1.4e-79 301.2 500 41.6
A10p08810 Brassica napus HOM05D004702 ORTHO05D005505 3.1e-79 300.1 500 41.4
Atru.chr13.733 Acer truncatum HOM05D004702 ORTHO05D005505 1.5e-78 297.7 204 72.5
Lalb_Chr23g0267231 Lupinus albus HOM05D004702 ORTHO05D005505 2.5e-76 290.4 231 61.9
SGA_v2.0_scaffold197G41020 Striga asiatica HOM05D004702 ORTHO05D005505 4.2e-76 289.7 471 40.8
Migut.N02734 Erythranthe guttata HOM05D004702 ORTHO05D005505 1.8e-74 284.3 345 44.6
ATR0762G037 Amborella trichopoda HOM05D004702 ORTHO05D005505 1.3e-72 278.1 426 40.8
unitig_8.g5031 Utricularia gibba HOM05D004702 ORTHO05D005505 2.2e-72 277.3 470 41.1
C09p38410 Brassica napus HOM05D004702 ORTHO05D005505 2.8e-72 276.9 490 38.6
SalBow6G2833 Salvia bowleyana HOM05D004702 ORTHO05D005505 5.3e-71 272.7 451 40.4
CDE01G0679 Ceratophyllum demersum HOM05D004702 ORTHO05D005505 6.9e-71 272.3 391 40.2
SalBow6G7027 Salvia bowleyana HOM05D004702 ORTHO05D005505 1.2e-70 271.6 451 40.1
HPP92_017369 Vanilla planifolia HOM05D004702 ORTHO05D005505 6.5e-69 265.8 394 40.9
Zm00001eb247120 Zea mays HOM05D004702 ORTHO05D005505 6.5e-69 265.8 503 35.8
Lsat_1_v5_gn_4_127260 Lactuca sativa HOM05D004702 ORTHO05D005505 4.1e-63 246.5 193 62.7
SEGI_05734 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 5.0e-61 239.6 412 39.3
SEGI_36308 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 2.7e-59 233.8 498 34.7
SEGI_19446 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 1.5e-57 228.0 408 38.2
SEGI_03871 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 2.8e-56 223.8 405 39.8
AagrBONN_evm.TU.Sc2ySwM_228.394 Anthoceros agrestis HOM05D004702 ORTHO05D005505 1.6e-54 218.0 433 36.0
Pp3c15_17100 Physcomitrium patens HOM05D004702 ORTHO05D005505 3.5e-54 216.9 417 36.7
HPP92_010365 Vanilla planifolia HOM05D004702 ORTHO05D005505 1.9e-52 211.1 479 34.9
SEGI_12847 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 9.4e-52 208.8 390 36.9
Psat0s3398g0240 Pisum sativum HOM05D004702 ORTHO05D005505 1.2e-51 208.4 160 62.5
arahy.Tifrunner.gnm1.ann1.7E6QIB Arachis hypogaea HOM05D004702 ORTHO05D005505 1.2e-49 201.8 148 66.9
arahy.Tifrunner.gnm1.ann1.7V26PZ Arachis hypogaea HOM05D004702 ORTHO05D005505 1.2e-49 201.8 148 66.9
CARHR264230 Cardamine hirsuta HOM05D004702 ORTHO05D005505 3.2e-44 183.7 172 55.8
AT4G06536 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 5.2e-42 176.4 168 54.2
Sp6g10680 Schrenkiella parvula HOM05D004702 ORTHO05D005505 3.7e-40 170.2 172 52.3
SMO145G0126 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 1.2e-38 165.2 438 30.6
Psat0s3398g0080 Pisum sativum HOM05D004702 ORTHO05D005505 8.6e-37 159.1 109 67.0
Nn7g37290 Nelumbo nucifera HOM05D004702 ORTHO05D005505 1.6e-35 154.8 159 50.9
SMO112G0032 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 2.1e-35 154.5 380 32.1
AT4G06534 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 2.6e-33 147.5 327 36.1
Os02g0614700 Oryza sativa ssp. japonica HOM05D004702 ORTHO05D005505 4.4e-33 146.7 162 46.3
AUR62044709 Chenopodium quinoa HOM05D004702 ORTHO05D005505 2.2e-32 144.4 294 36.7
AUR62044714 Chenopodium quinoa HOM05D004702 ORTHO05D005505 2.2e-32 144.4 294 36.7
Sp6g10670 Schrenkiella parvula HOM05D004702 ORTHO05D005505 1.6e-30 138.3 319 36.1
CBR_g733 Chara braunii HOM05D004702 ORTHO05D005505 3.3e-20 104.0 264 31.1
Glyma.15G095100 Glycine max HOM05D004702 ORTHO05D005505 1.3e-13 82.0 110 47.3
SMO364G0277 Selaginella moellendorffii HOM05D051657 ORTHO05D005505 8.9e-10 69.3 121 37.2
SEGI_40713 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 4.9e-08 63.5 110 30.9


User provided reference genes

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