Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g33950 Fragaria vesca HOM05D005090 ORTHO05D006142 3.2e-93 345.1 179 100.0
FAN24G0633 Fragaria x ananassa HOM05D005090 ORTHO05D006142 3.2e-93 345.1 179 100.0
FAN27G2315 Fragaria x ananassa HOM05D005090 ORTHO05D006142 2.1e-89 332.4 179 96.6
FAN20G1047 Fragaria x ananassa HOM05D005090 ORTHO05D006142 5.2e-88 327.8 179 95.5
FAN15G0851 Fragaria x ananassa HOM05D005090 ORTHO05D006142 1.2e-87 326.6 179 96.1
RcHm_v2.0_Chr6g0308461 Rosa chinensis HOM05D005090 ORTHO05D006142 6.0e-84 314.3 179 90.5
MD08G1095400 Malus domestica HOM05D005090 ORTHO05D006142 2.5e-66 255.8 176 77.8
Prupe.1G431400 Prunus persica HOM05D005090 ORTHO05D006142 5.3e-64 248.1 179 74.9
Cfa009959 Carpinus fangiana HOM05D005090 ORTHO05D006142 1.5e-63 246.5 181 73.5
Gorai.010G022500 Gossypium raimondii HOM05D005090 ORTHO05D006142 3.4e-63 245.4 179 73.2
MD15G1077900 Malus domestica HOM05D005090 ORTHO05D006142 1.0e-62 243.8 180 74.4
Gohir.D06G019036 Gossypium hirsutum HOM05D005090 ORTHO05D006142 1.1e-61 240.4 179 70.9
CiPaw.15G053600 Carya illinoinensis HOM05D005090 ORTHO05D006142 4.2e-61 238.4 180 72.8
Duzib093G0455 Durio zibethinus HOM05D005090 ORTHO05D006142 1.3e-59 233.4 175 73.1
Atru.chr13.741 Acer truncatum HOM05D005090 ORTHO05D006142 8.7e-59 230.7 179 70.4
Phvul.001G024300 Phaseolus vulgaris HOM05D005090 ORTHO05D006142 1.1e-58 230.3 173 70.5
Glyma.14G085300 Glycine max HOM05D005090 ORTHO05D006142 2.5e-58 229.2 152 77.6
GSVIVG01009445001 Vitis vinifera HOM05D005090 ORTHO05D006142 4.3e-58 228.4 167 70.7
Manes.18G040700 Manihot esculenta HOM05D005090 ORTHO05D006142 9.6e-58 227.3 170 70.6
Duzib041G0676 Durio zibethinus HOM05D005090 ORTHO05D006142 2.8e-57 225.7 175 70.3
VMungo0647G1453 Vigna mungo HOM05D005090 ORTHO05D006142 2.8e-57 225.7 173 69.4
Glyma.17G239400 Glycine max HOM05D005090 ORTHO05D006142 4.8e-57 224.9 172 69.2
Medtr1g018930 Medicago truncatula HOM05D005090 ORTHO05D006142 4.0e-56 221.9 170 68.8
Duzib116G0889 Durio zibethinus HOM05D005090 ORTHO05D006142 5.3e-56 221.5 175 68.0
Ciclev10002608m.g Citrus clementina HOM05D005090 ORTHO05D006142 6.9e-56 221.1 179 65.4
TAR376G0388 Trochodendron aralioides HOM05D005090 ORTHO05D006142 6.9e-56 221.1 172 66.3
Ca_13273_v3 Cicer arietinum L. HOM05D005090 ORTHO05D006142 9.0e-56 220.7 155 72.3
Actinidia01086 Actinidia chinensis HOM05D005090 ORTHO05D006142 2.6e-55 219.2 176 65.9
Lalb_Chr22g0354971 Lupinus albus HOM05D005090 ORTHO05D006142 2.6e-55 219.2 169 69.8
Actinidia22653 Actinidia chinensis HOM05D005090 ORTHO05D006142 1.0e-54 217.2 173 65.3
Lj5g0006850 Lotus japonicus HOM05D005090 ORTHO05D006142 1.0e-54 217.2 171 69.6
arahy.Tifrunner.gnm1.ann1.LLUM42 Arachis hypogaea HOM05D005090 ORTHO05D006142 1.3e-54 216.9 176 67.6
arahy.Tifrunner.gnm1.ann1.Q1327U Arachis hypogaea HOM05D005090 ORTHO05D006142 1.3e-54 216.9 176 67.6
Cpa.g.sc21.163 Carica papaya HOM05D005090 ORTHO05D006142 1.7e-54 216.5 180 67.8
TWI36G0811 Tripterygium wilfordii HOM05D005090 ORTHO05D006142 2.9e-54 215.7 186 67.2
Haze_18058 Corylus avellana HOM05D005090 ORTHO05D006142 8.4e-54 214.2 246 52.4
Oeu009772.1 Olea europaea HOM05D005090 ORTHO05D006142 8.4e-54 214.2 169 65.7
CANSAT25G3428 Cannabis sativa HOM05D005090 ORTHO05D006142 1.2e-52 210.3 154 72.7
ClCG05G020140 Citrullus lanatus HOM05D005090 ORTHO05D006142 1.6e-52 209.9 181 65.7
Nitab4.5_0004730g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 2.7e-52 209.1 184 62.5
Sabra14G0016700 Salix brachista HOM05D005090 ORTHO05D006142 2.3e-51 206.1 172 66.9
Aqoxy6G01237 Aquilegia oxysepala HOM05D005090 ORTHO05D006142 3.0e-51 205.7 151 70.2
Nitab4.5_0002548g0010 Nicotiana tabacum HOM05D005090 ORTHO05D006142 5.1e-51 204.9 179 59.2
Rhsim06G0054600 Rhododendron simsii HOM05D005090 ORTHO05D006142 5.1e-51 204.9 180 62.2
Thecc.08G002400 Theobroma cacao HOM05D005090 ORTHO05D006142 5.1e-51 204.9 175 64.0
CANSAT56G0556 Cannabis sativa HOM05D005090 ORTHO05D006142 8.7e-51 204.1 188 63.3
MD17G1062600 Malus domestica HOM05D005090 ORTHO05D006142 1.9e-50 203.0 152 75.0
Peaxi162Scf00121g00414 Petunia axillaris HOM05D005090 ORTHO05D006142 2.5e-50 202.6 177 62.1
Sed0019095 Sechium edule HOM05D005090 ORTHO05D006142 4.3e-50 201.8 179 62.6
Haze_18064 Corylus avellana HOM05D005090 ORTHO05D006142 7.4e-50 201.1 283 45.9
Eucgr.F02314 Eucalyptus grandis HOM05D005090 ORTHO05D006142 3.7e-49 198.7 139 71.2
PGR031G1041 Punica granatum HOM05D005090 ORTHO05D006142 3.7e-49 198.7 175 61.7
Sed0001046 Sechium edule HOM05D005090 ORTHO05D006142 4.8e-49 198.4 158 69.0
COL.COLO4_10129 Corchorus olitorius HOM05D005090 ORTHO05D006142 6.3e-49 198.0 207 58.0
MELO3C016776.2 Cucumis melo HOM05D005090 ORTHO05D006142 6.3e-49 198.0 182 62.1
Potri.014G024500 Populus trichocarpa HOM05D005090 ORTHO05D006142 6.3e-49 198.0 177 63.8
CSS0005413 Camellia sinensis var. sinensis HOM05D005090 ORTHO05D006142 1.8e-48 196.4 181 62.4
MBI16_g23060_MAGBIO Magnolia biondii HOM05D005090 ORTHO05D006142 4.1e-48 195.3 171 62.6
Nn1g04760 Nelumbo nucifera HOM05D005090 ORTHO05D006142 6.9e-48 194.5 179 62.0
Potri.002G123400 Populus trichocarpa HOM05D005090 ORTHO05D006142 9.0e-48 194.1 168 65.5
MSTRG.1060 Avicennia marina HOM05D005090 ORTHO05D006142 1.2e-47 193.7 169 62.7
AUR62036618 Chenopodium quinoa HOM05D005090 ORTHO05D006142 1.2e-47 193.7 156 67.9
Sopen04g032180 Solanum pennellii HOM05D005090 ORTHO05D006142 2.0e-47 193.0 181 55.8
PGSC0003DMG400007949 Solanum tuberosum HOM05D005090 ORTHO05D006142 2.0e-47 193.0 182 57.1
CAN.G1030.34 Capsicum annuum HOM05D005090 ORTHO05D006142 4.5e-47 191.8 151 63.6
Nn5g30374 Nelumbo nucifera HOM05D005090 ORTHO05D006142 5.9e-47 191.4 175 62.9
Solyc04g078600.3 Solanum lycopersicum HOM05D005090 ORTHO05D006142 5.9e-47 191.4 185 55.7
Sc15g0005920 Simmondsia chinensis HOM05D005090 ORTHO05D006142 1.3e-46 190.3 146 69.2
Hma1.2p1_0360F.1_g135840 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 2.2e-46 189.5 157 66.9
THA.LOC104807114 Tarenaya hassleriana HOM05D005090 ORTHO05D006142 1.1e-45 187.2 152 64.5
SalBow7G1773 Salvia bowleyana HOM05D005090 ORTHO05D006142 1.4e-45 186.8 169 56.8
EL10As7g23773 Beta vulgaris HOM05D005090 ORTHO05D006142 1.9e-45 186.4 149 68.5
HanXRQChr04g0103471 Helianthus annuus HOM05D005090 ORTHO05D006142 3.2e-45 185.7 172 59.3
Manes.05G176500 Manihot esculenta HOM05D005090 ORTHO05D006142 9.4e-45 184.1 122 78.7
Cc10_g04780 Coffea canephora HOM05D005090 ORTHO05D006142 2.1e-44 183.0 171 57.3
Psat6g014640 Pisum sativum HOM05D005090 ORTHO05D006142 2.1e-44 183.0 172 59.9
Thhalv10005720m.g Eutrema salsugineum HOM05D005090 ORTHO05D006142 3.6e-44 182.2 169 58.0
DCAR_019423 Daucus carota HOM05D005090 ORTHO05D006142 4.6e-44 181.8 174 57.5
Lsat_1_v5_gn_1_22101 Lactuca sativa HOM05D005090 ORTHO05D006142 4.6e-44 181.8 185 54.6
Aa31LG3G14010 Aethionema arabicum HOM05D005090 ORTHO05D006142 6.1e-44 181.4 171 56.1
Carub.0008s0737 Capsella rubella HOM05D005090 ORTHO05D006142 6.1e-44 181.4 176 57.4
CARHR184350 Cardamine hirsuta HOM05D005090 ORTHO05D006142 1.4e-43 180.3 179 57.5
PSO541G4295 Papaver somniferum HOM05D005090 ORTHO05D006142 1.8e-43 179.9 181 58.6
PSO675G4571 Papaver somniferum HOM05D005090 ORTHO05D006142 2.3e-43 179.5 181 58.0
Sp2g18330 Schrenkiella parvula HOM05D005090 ORTHO05D006142 3.0e-43 179.1 147 62.6
C07p38740 Brassica napus HOM05D005090 ORTHO05D006142 8.8e-43 177.6 145 62.8
BolC7t44393H Brassica oleracea HOM05D005090 ORTHO05D006142 8.8e-43 177.6 145 62.8
A06p39530 Brassica napus HOM05D005090 ORTHO05D006142 1.1e-42 177.2 145 62.8
BraA06t26868Z Brassica rapa HOM05D005090 ORTHO05D006142 1.5e-42 176.8 145 62.8
Hund05334 Selenicereus undatus HOM05D005090 ORTHO05D006142 1.5e-42 176.8 183 56.8
BolC2t11671H Brassica oleracea HOM05D005090 ORTHO05D006142 2.0e-42 176.4 171 57.3
Hma1.2p1_0634F.1_g193080 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 2.0e-42 176.4 181 55.8
AT5G47830 Arabidopsis thaliana HOM05D005090 ORTHO05D006142 7.4e-42 174.5 148 62.2
BcaC03g17615 Brassica carinata HOM05D005090 ORTHO05D006142 7.4e-42 174.5 170 55.9
AUR62038807 Chenopodium quinoa HOM05D005090 ORTHO05D006142 1.3e-41 173.7 172 57.6
A02p37140 Brassica napus HOM05D005090 ORTHO05D006142 2.2e-41 172.9 176 54.0
BraA02t08700Z Brassica rapa HOM05D005090 ORTHO05D006142 2.2e-41 172.9 176 54.0
C02p56140 Brassica napus HOM05D005090 ORTHO05D006142 3.7e-41 172.2 170 55.3
Lj4C63T3 Lonicera japonica HOM05D005090 ORTHO05D006142 3.7e-41 172.2 122 71.3
AL8G19800 Arabidopsis lyrata HOM05D005090 ORTHO05D006142 1.1e-40 170.6 174 56.3
BcaB07g30052 Brassica carinata HOM05D005090 ORTHO05D006142 4.1e-40 168.7 169 55.6
HanXRQChr05g0150671 Helianthus annuus HOM05D005090 ORTHO05D006142 4.1e-40 168.7 165 55.2
ECA246G0692 Erigeron canadensis HOM05D005090 ORTHO05D006142 1.2e-39 167.2 172 52.9
ATR0762G034 Amborella trichopoda HOM05D005090 ORTHO05D006142 3.4e-39 165.6 145 57.9
Oeu037620.1 Olea europaea HOM05D005090 ORTHO05D006142 5.9e-39 164.9 120 65.8
unitig_26.g9810 Utricularia gibba HOM05D005090 ORTHO05D006142 2.2e-38 162.9 177 55.4
CDE06G1995 Ceratophyllum demersum HOM05D005090 ORTHO05D006142 6.5e-38 161.4 152 58.6
SEGI_34157 Sequoiadendron giganteum HOM05D005090 ORTHO05D006142 5.5e-37 158.3 169 51.5
SGA_v2.0_scaffold197G41030 Striga asiatica HOM05D005090 ORTHO05D006142 3.6e-36 155.6 225 43.1
ECA247G1795 Erigeron canadensis HOM05D005090 ORTHO05D006142 1.8e-35 153.3 135 60.0
Os02g0158600 Oryza sativa ssp. japonica HOM05D005090 ORTHO05D006142 2.0e-34 149.8 138 56.5
Zm00001eb232600 Zea mays HOM05D005090 ORTHO05D006142 2.6e-34 149.4 138 58.0
Migut.C00536 Erythranthe guttata HOM05D005090 ORTHO05D006142 6.3e-33 144.8 175 49.7
EL10As7g23770 Beta vulgaris HOM05D005090 ORTHO05D006142 8.2e-33 144.4 151 57.6
BcaB05g23208 Brassica carinata HOM05D005090 ORTHO05D006142 1.2e-31 140.6 124 58.1
CsaV3_4G034590 Cucumis sativus L. HOM05D005090 ORTHO05D006142 2.6e-31 139.4 182 49.5
Nitab4.5_0012973g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 3.5e-31 139.0 120 57.5
BcaB04g18280 Brassica carinata HOM05D005090 ORTHO05D006142 4.5e-31 138.7 117 60.7
TAR628G0694 Trochodendron aralioides HOM05D005090 ORTHO05D006142 2.2e-30 136.3 115 65.2
Pp3c10_3910 Physcomitrium patens HOM05D005090 ORTHO05D006142 4.7e-28 128.6 151 47.7
Pp3c14_4680 Physcomitrium patens HOM05D005090 ORTHO05D006142 1.0e-27 127.5 149 46.3
Pp3c14_4740 Physcomitrium patens HOM05D005090 ORTHO05D006142 1.0e-27 127.5 149 46.3
vmacro04554 Vaccinium macrocarpon HOM05D005090 ORTHO05D006142 3.0e-27 125.9 247 34.8
Mapoly0121s0046 Marchantia polymorpha HOM05D005090 ORTHO05D006142 1.5e-26 123.6 184 41.8
EL10As7g23766 Beta vulgaris HOM05D005090 ORTHO05D006142 4.4e-26 122.1 128 57.8
EL10As7g23771 Beta vulgaris HOM05D005090 ORTHO05D006142 4.4e-26 122.1 128 57.8
AagrBONN_evm.TU.Sc2ySwM_340.334 Anthoceros agrestis HOM05D005090 ORTHO05D006142 2.8e-25 119.4 152 44.1
Nitab4.5_0005621g0060 Nicotiana tabacum HOM05D005090 ORTHO05D006142 1.4e-24 117.1 100 57.0
AUR62044449 Chenopodium quinoa HOM05D005090 ORTHO05D006142 1.3e-22 110.5 119 56.3
SMO140G0004 Selaginella moellendorffii HOM05D002426 ORTHO05D002873 1.3e-22 110.5 180 38.3
MD06G1210300 Malus domestica HOM05D005090 ORTHO05D006142 3.8e-22 109.0 86 70.9
Sc02g0007470 Simmondsia chinensis HOM05D005090 ORTHO05D006142 9.4e-21 104.4 172 38.4
BcaB01g00393 Brassica carinata HOM05D005090 ORTHO05D006142 2.0e-18 96.7 103 51.5
EL10As7g23765 Beta vulgaris HOM05D005090 ORTHO05D006142 7.0e-16 88.2 115 51.3
CBR_g12766 Chara braunii HOM05D005090 ORTHO05D006142 2.0e-15 86.7 168 37.5
BcaC02g09103 Brassica carinata HOM05D005090 ORTHO05D006142 8.0e-12 74.7 95 51.6
C04p38460 Brassica napus HOM05D005090 ORTHO05D006142 1.8e-11 73.6 95 51.6
BolC6t37479H Brassica oleracea HOM05D005090 ORTHO05D006142 8.8e-11 71.2 95 50.5
BcaC03g17171 Brassica carinata HOM05D005090 ORTHO05D006142 1.5e-10 70.5 95 50.5
BolC2t11185H Brassica oleracea HOM05D005090 ORTHO05D006142 1.5e-10 70.5 95 50.5
C02p38970 Brassica napus HOM05D005090 ORTHO05D006142 4.4e-10 68.9 91 51.6
BolC2t09908H Brassica oleracea HOM05D005090 ORTHO05D006142 4.4e-10 68.9 91 51.6
Sabra02G0096900 Salix brachista HOM05D005090 ORTHO05D006142 1.3e-09 67.4 58 62.1
Sabra02G0096800 Salix brachista HOM05D005090 ORTHO05D006142 8.3e-09 64.7 48 70.8
CDE04G2695 Ceratophyllum demersum HOM05D005090 ORTHO05D006142 6.6e-06 55.1 51 56.9


User provided reference genes

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