Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g33280 Fragaria vesca HOM05D004288 ORTHO05D004997 1.4e-57 226.1 114 100.0
FAN24G2538 Fragaria x ananassa HOM05D004288 ORTHO05D004997 1.4e-57 226.1 114 100.0
FAN27G1232 Fragaria x ananassa HOM05D004288 ORTHO05D004997 4.4e-56 221.1 114 97.4
FAN15G0972 Fragaria x ananassa HOM05D004288 ORTHO05D004997 1.7e-55 219.2 114 97.4
FAN20G2816 Fragaria x ananassa HOM05D004288 ORTHO05D004997 2.9e-55 218.4 114 96.5
RcHm_v2.0_Chr6g0309361 Rosa chinensis HOM05D004288 ORTHO05D004997 3.9e-44 181.4 118 81.4
MD15G1071700 Malus domestica HOM05D004288 ORTHO05D004997 1.2e-26 123.2 117 61.5
Prupe.1G424700 Prunus persica HOM05D004288 ORTHO05D004997 1.3e-23 113.2 122 56.6
MD08G1087000 Malus domestica HOM05D004288 ORTHO05D004997 6.4e-23 110.9 122 58.2
Cfa013675 Carpinus fangiana HOM05D004288 ORTHO05D004997 2.3e-20 102.4 115 53.9
GSVIVG01009362001 Vitis vinifera HOM05D004288 ORTHO05D004997 8.7e-20 100.5 120 53.3
CiPaw.07G176600 Carya illinoinensis HOM05D004288 ORTHO05D004997 1.1e-19 100.1 113 54.9
Haze_22316 Corylus avellana HOM05D004288 ORTHO05D004997 3.3e-19 98.6 114 53.5
Dinv44970 Davidia involucrata HOM05D004288 ORTHO05D004997 9.6e-19 97.1 111 52.3
Ciclev10002881m.g Citrus clementina HOM05D004288 ORTHO05D004997 4.8e-18 94.7 115 52.2
TWI12G0116 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 2.4e-17 92.4 111 53.2
Atru.chr13.813 Acer truncatum HOM05D004288 ORTHO05D004997 4.0e-17 91.7 117 50.4
Duzib116G0008 Durio zibethinus HOM05D004288 ORTHO05D004997 1.5e-16 89.7 107 49.5
QL12p037641 Quercus lobata HOM05D004288 ORTHO05D004997 2.0e-16 89.4 137 44.5
TWI56G0562 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 2.0e-16 89.4 111 48.6
Cc10_g05620 Coffea canephora HOM05D004288 ORTHO05D004997 2.6e-16 89.0 109 46.8
Gohir.A05G208400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 3.4e-16 88.6 106 50.0
Potri.014G017600 Populus trichocarpa HOM05D004288 ORTHO05D004997 3.4e-16 88.6 117 47.9
Rhsim06G0060800 Rhododendron simsii HOM05D004288 ORTHO05D004997 7.6e-16 87.4 105 46.7
Duzib041G0778 Durio zibethinus HOM05D004288 ORTHO05D004997 1.3e-15 86.7 109 51.4
Thecc.08G091000 Theobroma cacao HOM05D004288 ORTHO05D004997 1.3e-15 86.7 109 49.5
Manes.18G045000 Manihot esculenta HOM05D004288 ORTHO05D004997 3.8e-15 85.1 114 46.5
Gohir.D05G211900 Gossypium hirsutum HOM05D004288 ORTHO05D004997 4.9e-15 84.7 106 50.0
Gorai.009G218500 Gossypium raimondii HOM05D004288 ORTHO05D004997 4.9e-15 84.7 106 50.0
Actinidia10187 Actinidia chinensis HOM05D004288 ORTHO05D004997 6.4e-15 84.3 76 56.6
CSS0041913 Camellia sinensis var. sinensis HOM05D004288 ORTHO05D004997 6.4e-15 84.3 106 45.3
Glyma.17G236500 Glycine max HOM05D004288 ORTHO05D004997 1.4e-14 83.2 122 49.2
Phvul.001G026500 Phaseolus vulgaris HOM05D004288 ORTHO05D004997 1.4e-14 83.2 119 47.1
vmacro21447 Vaccinium macrocarpon HOM05D004288 ORTHO05D004997 1.9e-14 82.8 105 47.6
Dinv39247 Davidia involucrata HOM05D004288 ORTHO05D004997 2.4e-14 82.4 109 46.8
CiPaw.13G085100 Carya illinoinensis HOM05D004288 ORTHO05D004997 7.1e-14 80.9 76 59.2
TAR628G0045 Trochodendron aralioides HOM05D004288 ORTHO05D004997 7.1e-14 80.9 113 46.9
Actinidia22683 Actinidia chinensis HOM05D004288 ORTHO05D004997 1.2e-13 80.1 106 46.2
Actinidia38098 Actinidia chinensis HOM05D004288 ORTHO05D004997 1.2e-13 80.1 112 44.6
CANSAT25G2350 Cannabis sativa HOM05D004288 ORTHO05D004997 2.1e-13 79.3 113 45.1
Glyma.14G087800 Glycine max HOM05D004288 ORTHO05D004997 2.1e-13 79.3 122 48.4
Phvul.001G026400 Phaseolus vulgaris HOM05D004288 ORTHO05D004997 2.1e-13 79.3 111 45.0
Gorai.010G024900 Gossypium raimondii HOM05D004288 ORTHO05D004997 2.7e-13 79.0 108 50.9
CiPaw.08G113500 Carya illinoinensis HOM05D004288 ORTHO05D004997 3.5e-13 78.6 73 58.9
CiPaw.08G049000 Carya illinoinensis HOM05D004288 ORTHO05D004997 4.6e-13 78.2 115 47.8
PSO541G1266 Papaver somniferum HOM05D004288 ORTHO05D004997 4.6e-13 78.2 110 40.9
Peaxi162Scf00081g01322 Petunia axillaris HOM05D004288 ORTHO05D004997 6.0e-13 77.8 44 75.0
THA.LOC104825767 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 6.0e-13 77.8 102 45.1
TAR376G0993 Trochodendron aralioides HOM05D004288 ORTHO05D004997 1.0e-12 77.0 112 44.6
EL10As7g23804 Beta vulgaris HOM05D004288 ORTHO05D004997 2.3e-12 75.9 118 45.8
Hma1.2p1_0210F.1_g089620 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 2.3e-12 75.9 75 58.7
THA.LOC104801605 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 2.3e-12 75.9 98 42.9
Cpa.g.sc21.102 Carica papaya HOM05D004288 ORTHO05D004997 3.0e-12 75.5 116 40.5
Migut.C00495 Erythranthe guttata HOM05D004288 ORTHO05D004997 3.0e-12 75.5 114 43.9
Gohir.D06G020400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 3.0e-12 75.5 108 49.1
SalBow6G1935 Salvia bowleyana HOM05D004288 ORTHO05D004997 3.0e-12 75.5 89 42.7
SalBow8G0960 Salvia bowleyana HOM05D004288 ORTHO05D004997 3.0e-12 75.5 89 42.7
CSS0005181 Camellia sinensis var. sinensis HOM05D004288 ORTHO05D004997 3.9e-12 75.1 118 42.4
PSO675G1665 Papaver somniferum HOM05D004288 ORTHO05D004997 3.9e-12 75.1 112 41.1
Hma1.2p1_0819F.1_g223820 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 5.1e-12 74.7 99 47.5
Hund14391 Selenicereus undatus HOM05D004288 ORTHO05D004997 6.7e-12 74.3 56 67.9
Gohir.A06G023200 Gossypium hirsutum HOM05D004288 ORTHO05D004997 8.7e-12 73.9 108 48.1
Peaxi162Scf00160g00120 Petunia axillaris HOM05D004288 ORTHO05D004997 1.5e-11 73.2 71 57.7
SalBow7G4748 Salvia bowleyana HOM05D004288 ORTHO05D004997 1.5e-11 73.2 50 66.0
PGSC0003DMG400021529 Solanum tuberosum HOM05D004288 ORTHO05D004997 1.5e-11 73.2 112 44.6
COL.COLO4_28524 Corchorus olitorius HOM05D004288 ORTHO05D004997 1.9e-11 72.8 76 60.5
DCAR_012811 Daucus carota HOM05D004288 ORTHO05D004997 1.9e-11 72.8 58 60.3
Nitab4.5_0000569g0070 Nicotiana tabacum HOM05D004288 ORTHO05D004997 3.3e-11 72.0 101 45.5
Os03g0206201 Oryza sativa ssp. japonica HOM05D004288 ORTHO05D004997 3.3e-11 72.0 66 50.0
Solyc04g078010.4 Solanum lycopersicum HOM05D004288 ORTHO05D004997 3.3e-11 72.0 54 63.0
Sopen04g031610 Solanum pennellii HOM05D004288 ORTHO05D004997 3.3e-11 72.0 54 63.0
TAR636G2516 Trochodendron aralioides HOM05D004288 ORTHO05D004997 3.3e-11 72.0 80 48.8
Oeu057368.1 Olea europaea HOM05D004288 ORTHO05D004997 4.3e-11 71.6 115 41.7
Eucgr.F00116 Eucalyptus grandis HOM05D004288 ORTHO05D004997 5.6e-11 71.2 116 43.1
Sc02g0007800 Simmondsia chinensis HOM05D003189 ORTHO05D003449 5.6e-11 71.2 95 49.5
MBI16_g22811_MAGBIO Magnolia biondii HOM05D004288 ORTHO05D004997 7.4e-11 70.9 114 42.1
Ah.05g167180 Amaranthus hybridus HOM05D004288 ORTHO05D004997 9.6e-11 70.5 122 44.3
Nitab4.5_0014410g0020 Nicotiana tabacum HOM05D004288 ORTHO05D004997 9.6e-11 70.5 64 53.1
Sopen12g030390 Solanum pennellii HOM05D004288 ORTHO05D004997 9.6e-11 70.5 66 56.1
HanXRQChr01g0027971 Helianthus annuus HOM05D004288 ORTHO05D004997 1.3e-10 70.1 102 46.1
Rhsim07G0221200 Rhododendron simsii HOM05D004288 ORTHO05D004997 1.3e-10 70.1 47 66.0
Solyc12g088410.3 Solanum lycopersicum HOM05D004288 ORTHO05D004997 1.3e-10 70.1 66 56.1
MSTRG.22227 Avicennia marina HOM05D004288 ORTHO05D004997 1.6e-10 69.7 106 43.4
PGSC0003DMG401011559 Solanum tuberosum HOM05D004288 ORTHO05D004997 1.6e-10 69.7 66 54.5
CsaV3_4G034910 Cucumis sativus L. HOM05D004288 ORTHO05D003449 2.1e-10 69.3 89 46.1
Sed0012219 Sechium edule HOM05D004288 ORTHO05D004997 2.1e-10 69.3 51 62.7
TPR.G11815 Trifolium pratense HOM05D004288 ORTHO05D004997 2.8e-10 68.9 116 38.8
Zm00001eb007460 Zea mays HOM05D004288 ORTHO05D004997 2.8e-10 68.9 47 68.1
CAN.G107.3 Capsicum annuum HOM05D004288 ORTHO05D004997 3.6e-10 68.6 48 66.7
Sabra14G0011500 Salix brachista HOM05D004288 ORTHO05D004997 3.6e-10 68.6 86 47.7
ECA232G2356 Erigeron canadensis HOM05D004288 ORTHO05D004997 4.8e-10 68.2 115 42.6
Lsat_1_v5_gn_4_130821 Lactuca sativa HOM05D004288 ORTHO05D004997 4.8e-10 68.2 112 43.8
Sed0026714 Sechium edule HOM05D004288 ORTHO05D004997 4.8e-10 68.2 116 39.7
CiPaw.04G152800 Carya illinoinensis HOM05D004288 ORTHO05D004997 6.2e-10 67.8 71 56.3
MELO3C032376.2 Cucumis melo HOM05D004288 ORTHO05D004997 6.2e-10 67.8 49 63.3
SGA_v2.0_scaffold14G06935 Striga asiatica HOM05D004288 ORTHO05D004997 6.2e-10 67.8 73 49.3
GSVIVG01037855001 Vitis vinifera HOM05D004288 ORTHO05D004997 8.1e-10 67.4 112 39.3
HanXRQChr09g0266571 Helianthus annuus HOM05D004288 ORTHO05D004997 1.1e-09 67.0 111 44.1
CDE06G1799 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 1.4e-09 66.6 55 60.0
Medtr1g018470 Medicago truncatula HOM05D004288 ORTHO05D004997 1.4e-09 66.6 111 41.4
Medtr1g418505 Medicago truncatula HOM05D004288 ORTHO05D004997 1.4e-09 66.6 111 41.4
Sed0005367 Sechium edule HOM05D004288 ORTHO05D004997 1.4e-09 66.6 115 40.0
CDE04G1463 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 1.8e-09 66.2 55 60.0
Nitab4.5_0011511g0010 Nicotiana tabacum HOM05D004288 ORTHO05D004997 1.8e-09 66.2 54 63.0
Aqoxy6G02704 Aquilegia oxysepala HOM05D004288 ORTHO05D004997 2.4e-09 65.9 58 58.6
ClCG05G020460 Citrullus lanatus HOM05D004288 ORTHO05D004997 3.1e-09 65.5 92 45.7
Nn1g04602 Nelumbo nucifera HOM05D004288 ORTHO05D004997 3.1e-09 65.5 120 40.8
Nitab4.5_0000934g0110 Nicotiana tabacum HOM05D004288 ORTHO05D004997 3.1e-09 65.5 69 52.2
CANSAT54G1812 Cannabis sativa HOM05D004288 ORTHO05D004997 4.0e-09 65.1 37 75.7
AUR62024064 Chenopodium quinoa HOM05D004288 ORTHO05D004997 4.0e-09 65.1 62 58.1
AUR62041737 Chenopodium quinoa HOM05D004288 ORTHO05D004997 5.3e-09 64.7 98 49.0
ClCG05G020480 Citrullus lanatus HOM05D004288 ORTHO05D004997 6.9e-09 64.3 47 63.8
MELO3C016806.2 Cucumis melo HOM05D004288 ORTHO05D004997 9.0e-09 63.9 116 38.8
PGR031G3267 Punica granatum HOM05D004288 ORTHO05D004997 9.0e-09 63.9 104 44.2
AUR62029595 Chenopodium quinoa HOM05D004288 ORTHO05D004997 1.5e-08 63.2 65 55.4
HanXRQChr11g0341661 Helianthus annuus HOM05D004288 ORTHO05D004997 1.5e-08 63.2 106 43.4
MSTRG.1030 Avicennia marina HOM05D004288 ORTHO05D004997 2.6e-08 62.4 51 60.8
Thhalv10015166m.g Eutrema salsugineum HOM05D004288 ORTHO05D004997 3.4e-08 62.0 49 63.3
VMungo0647G1919 Vigna mungo HOM05D004288 ORTHO05D004997 4.5e-08 61.6 119 39.5
DCAR_008852 Daucus carota HOM05D004288 ORTHO05D004997 7.6e-08 60.8 83 44.6
Psat6g015560 Pisum sativum HOM05D004288 ORTHO05D004997 7.6e-08 60.8 115 39.1
SGA_v2.0_scaffold238G43969 Striga asiatica HOM05D004288 ORTHO05D004997 7.6e-08 60.8 39 69.2
TAR381G1169 Trochodendron aralioides HOM05D004288 ORTHO05D004997 7.6e-08 60.8 80 46.2
Carub.0006s0080 Capsella rubella HOM05D004288 ORTHO05D004997 9.9e-08 60.5 48 64.6
Lj3g0011225 Lotus japonicus HOM05D004288 ORTHO05D004997 1.3e-07 60.1 117 41.0
Migut.N02769 Erythranthe guttata HOM05D004288 ORTHO05D004997 1.7e-07 59.7 48 56.2
unitig_8.g4880 Utricularia gibba HOM05D004288 ORTHO05D004997 1.7e-07 59.7 51 62.7
TPR.G3776 Trifolium pratense HOM05D004288 ORTHO05D004997 2.2e-07 59.3 80 42.5
DCAR_020077 Daucus carota HOM05D004288 ORTHO05D004997 8.4e-07 57.4 88 39.8
Lj6g0004688 Lotus japonicus HOM05D004288 ORTHO05D004997 1.1e-06 57.0 113 36.3
Sp6g40470 Schrenkiella parvula HOM05D004288 ORTHO05D004997 1.1e-06 57.0 38 68.4
AT5G01075 Arabidopsis thaliana HOM05D004288 ORTHO05D004997 1.4e-06 56.6 48 62.5
Lsat_1_v5_gn_6_112441 Lactuca sativa HOM05D004288 ORTHO05D004997 1.4e-06 56.6 45 62.2
BraA02t04704Z Brassica rapa HOM05D004288 ORTHO05D004997 2.4e-06 55.8 46 60.9
Ciclev10029597m.g Citrus clementina HOM05D004288 ORTHO05D004997 2.4e-06 55.8 116 37.1
Psat6g016040 Pisum sativum HOM05D004288 ORTHO05D004997 2.4e-06 55.8 113 37.2
AL6G11150 Arabidopsis lyrata HOM05D004288 ORTHO05D004997 3.2e-06 55.5 38 63.2
BcaC03g13064 Brassica carinata HOM05D004288 ORTHO05D004997 3.2e-06 55.5 46 58.7
C02p00310 Brassica napus HOM05D004288 ORTHO05D004997 3.2e-06 55.5 46 58.7
BolC2t06031H Brassica oleracea HOM05D004288 ORTHO05D004997 5.5e-06 54.7 46 58.7
ECA246G3669 Erigeron canadensis HOM05D002841 ORTHO05D003158 5.5e-06 54.7 40 57.5
CDE04G1843 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 7.1e-06 54.3 45 46.7
BcaB05g21897 Brassica carinata HOM05D004288 ORTHO05D004997 9.3e-06 53.9 48 60.4


User provided reference genes

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