Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g32940 Fragaria vesca HOM05D005715 ORTHO05D007160 7.1e-212 740.3 377 100.0
FAN24G0894 Fragaria x ananassa HOM05D005715 ORTHO05D007160 2.5e-209 731.9 377 99.5
FAN27G0384 Fragaria x ananassa HOM05D005715 ORTHO05D007160 5.3e-207 724.2 378 97.9
FAN15G0086 Fragaria x ananassa HOM05D005715 ORTHO05D007160 2.6e-206 721.8 377 97.6
FAN20G0332 Fragaria x ananassa HOM05D005715 ORTHO05D007160 1.1e-199 699.9 377 95.5
RcHm_v2.0_Chr6g0309781 Rosa chinensis HOM05D005715 ORTHO05D007160 1.8e-186 656.0 379 89.7
Prupe.1G421700 Prunus persica HOM05D005715 ORTHO05D007160 1.6e-150 536.6 390 74.4
MD08G1080800 Malus domestica HOM05D005715 ORTHO05D007160 5.2e-138 495.0 380 72.1
Thecc.08G087700 Theobroma cacao HOM05D005715 ORTHO05D007160 1.1e-127 460.7 380 67.1
QL12p038205 Quercus lobata HOM05D005715 ORTHO05D007160 2.4e-127 459.5 383 68.4
CiPaw.08G050600 Carya illinoinensis HOM05D005715 ORTHO05D007160 2.7e-126 456.1 382 68.1
QL05p065482 Quercus lobata HOM05D005715 ORTHO05D007160 6.0e-126 454.9 383 68.1
Duzib093G0740 Durio zibethinus HOM05D005715 ORTHO05D007160 1.5e-124 450.3 384 65.4
COL.COLO4_28493 Corchorus olitorius HOM05D005715 ORTHO05D007160 2.1e-118 429.9 367 64.9
Manes.18G047200 Manihot esculenta HOM05D005715 ORTHO05D007160 1.3e-117 427.2 382 63.1
Potri.002G117700 Populus trichocarpa HOM05D005715 ORTHO05D007160 1.3e-115 420.6 382 61.3
Cfa013768 Carpinus fangiana HOM05D005715 ORTHO05D007160 5.8e-113 411.8 373 64.9
CANSAT25G3138 Cannabis sativa HOM05D005715 ORTHO05D007160 4.6e-110 402.1 394 59.6
Haze_22425 Corylus avellana HOM05D005715 ORTHO05D007160 1.7e-109 400.2 371 65.0
Ciclev10001560m.g Citrus clementina HOM05D005715 ORTHO05D007160 5.1e-109 398.7 380 60.3
Cpa.g.sc142.38 Carica papaya HOM05D005715 ORTHO05D007160 1.1e-108 397.5 379 59.6
Sabra02G0092400 Salix brachista HOM05D005715 ORTHO05D007160 1.2e-105 387.5 365 59.5
Dinv44948 Davidia involucrata HOM05D005715 ORTHO05D007160 7.6e-105 384.8 368 58.4
Phvul.001G028500 Phaseolus vulgaris HOM05D005715 ORTHO05D007160 1.3e-104 384.0 381 57.5
Gohir.A05G210700 Gossypium hirsutum HOM05D005715 ORTHO05D007160 1.4e-103 380.6 374 57.5
TWI12G0318 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 9.3e-103 377.9 375 57.6
Potri.014G015300 Populus trichocarpa HOM05D005715 ORTHO05D007160 1.2e-102 377.5 381 57.2
TWI56G0918 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 1.2e-102 377.5 383 58.7
Gorai.009G220700 Gossypium raimondii HOM05D005715 ORTHO05D007160 2.1e-102 376.7 374 57.8
Lj5g0027881 Lotus japonicus HOM05D005715 ORTHO05D007160 3.5e-102 375.9 389 58.4
Glyma.14G089033 Glycine max HOM05D005715 ORTHO05D007160 7.9e-102 374.8 385 58.7
Glyma.17G234300 Glycine max HOM05D005715 ORTHO05D007160 8.7e-101 371.3 393 58.3
Medtr1g017920 Medicago truncatula HOM05D005715 ORTHO05D007160 5.6e-100 368.6 386 58.3
CSS0034937 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 2.6e-97 359.8 391 56.5
CSS0039747 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 2.6e-97 359.8 391 56.5
Gohir.D05G214000 Gossypium hirsutum HOM05D005715 ORTHO05D007160 1.9e-95 353.6 373 55.5
PGR031G1686 Punica granatum HOM05D005715 ORTHO05D007160 7.1e-95 351.7 399 53.9
Psat6g017920 Pisum sativum HOM05D005715 ORTHO05D007160 3.5e-94 349.4 389 56.0
Lalb_Chr22g0355691 Lupinus albus HOM05D005715 ORTHO05D007160 3.7e-91 339.3 390 55.6
Dinv39217 Davidia involucrata HOM05D005715 ORTHO05D007160 2.0e-89 333.6 347 55.6
VMungo0647G0294 Vigna mungo HOM05D005715 ORTHO05D007160 2.0e-89 333.6 454 47.1
Eucgr.F02242 Eucalyptus grandis HOM05D005715 ORTHO05D007160 4.5e-89 332.4 398 52.3
Actinidia10205 Actinidia chinensis HOM05D005715 ORTHO05D007160 1.7e-88 330.5 380 54.5
Rhsim06G0062800 Rhododendron simsii HOM05D005715 ORTHO05D007160 3.8e-88 329.3 379 52.2
Gorai.010G026200 Gossypium raimondii HOM05D005715 ORTHO05D007160 2.1e-86 323.6 369 53.4
TAR628G0320 Trochodendron aralioides HOM05D005715 ORTHO05D007160 1.8e-85 320.5 367 51.8
Nitab4.5_0000497g0110 Nicotiana tabacum HOM05D005715 ORTHO05D007160 3.0e-85 319.7 383 49.1
Thhalv10009308m.g Eutrema salsugineum HOM05D005715 ORTHO05D007160 8.7e-85 318.2 392 50.8
CAN.G724.34 Capsicum annuum HOM05D005715 ORTHO05D007160 1.9e-84 317.0 383 50.1
Nitab4.5_0003725g0050 Nicotiana tabacum HOM05D005715 ORTHO05D007160 3.3e-84 316.2 379 48.5
ClCG05G020660 Citrullus lanatus HOM05D005715 ORTHO05D007160 7.4e-84 315.1 388 54.1
Gohir.D06G021600 Gossypium hirsutum HOM05D005715 ORTHO05D007160 1.6e-83 313.9 369 52.3
Peaxi162Scf00081g00232 Petunia axillaris HOM05D005715 ORTHO05D007160 2.2e-83 313.5 377 48.8
Carub.0001s2602 Capsella rubella HOM05D005715 ORTHO05D007160 3.7e-83 312.8 384 49.7
Sopen04g031360 Solanum pennellii HOM05D005715 ORTHO05D007160 1.1e-82 311.2 386 49.7
PGSC0003DMG400010622 Solanum tuberosum HOM05D005715 ORTHO05D007160 1.1e-82 311.2 384 49.7
Lj4C71T16 Lonicera japonica HOM05D005715 ORTHO05D007160 2.4e-82 310.1 384 48.7
Solyc04g077740.1 Solanum lycopersicum HOM05D005715 ORTHO05D007160 2.4e-82 310.1 385 50.4
Lalb_Chr24g0399501 Lupinus albus HOM05D005715 ORTHO05D007160 9.0e-82 308.1 381 52.0
BcaC01g01604 Brassica carinata HOM05D005715 ORTHO05D007160 4.5e-81 305.8 382 48.2
AL1G40890 Arabidopsis lyrata HOM05D005715 ORTHO05D007160 1.0e-80 304.7 385 48.1
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 1.3e-80 304.3 378 50.3
Lalb_Chr14g0368141 Lupinus albus HOM05D005715 ORTHO05D007160 1.3e-80 304.3 381 52.5
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 2.9e-80 303.1 376 50.0
AT1G27461 Arabidopsis thaliana HOM05D005715 ORTHO05D007160 6.5e-80 302.0 374 48.4
C03p74190 Brassica napus HOM05D005715 ORTHO05D007160 8.5e-80 301.6 382 47.6
THA.LOC104825782 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 1.1e-79 301.2 395 48.1
THA.LOC104825172 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 3.2e-79 299.7 369 49.6
MELO3C016824.2 Cucumis melo HOM05D005715 ORTHO05D007160 7.2e-79 298.5 381 51.7
arahy.Tifrunner.gnm1.ann1.42CAD1 Arachis hypogaea HOM05D005715 ORTHO05D007160 9.4e-79 298.1 434 46.5
Sp1g23710 Schrenkiella parvula HOM05D005715 ORTHO05D007160 1.6e-78 297.4 395 47.6
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 3.6e-78 296.2 387 48.1
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 3.6e-78 296.2 387 48.1
BraA08t34576Z Brassica rapa HOM05D005715 ORTHO05D007160 3.6e-78 296.2 384 46.6
BcaC05g26566 Brassica carinata HOM05D005715 ORTHO05D007160 1.0e-77 294.7 387 48.1
BcaC01g06948 Brassica carinata HOM05D005715 ORTHO05D007160 1.4e-77 294.3 385 48.1
Gohir.A06G024500 Gossypium hirsutum HOM05D005715 ORTHO05D007160 1.4e-77 294.3 381 49.9
Nn5g30612 Nelumbo nucifera HOM05D005715 ORTHO05D007160 2.6e-76 290.0 390 48.5
Aa31LG7G10200 Aethionema arabicum HOM05D005715 ORTHO05D007160 4.4e-76 289.3 379 49.6
A08p26250 Brassica napus HOM05D005715 ORTHO05D007160 7.4e-76 288.5 386 45.3
Nn1g04537 Nelumbo nucifera HOM05D005715 ORTHO05D007160 4.8e-75 285.8 392 46.9
CARHR027070 Cardamine hirsuta HOM05D005715 ORTHO05D007160 8.2e-75 285.0 374 48.7
Oeu053625.1 Olea europaea HOM05D005715 ORTHO05D007160 2.0e-73 280.4 384 46.4
SHI08419 Sapria himalayana HOM05D005715 ORTHO05D000023 7.7e-73 278.5 349 49.9
arahy.Tifrunner.gnm1.ann1.3URM83 Arachis hypogaea HOM05D005715 ORTHO05D009860 2.2e-72 276.9 425 45.2
Oeu053093.1 Olea europaea HOM05D005715 ORTHO05D007160 1.9e-71 273.9 384 44.5
MSTRG.24379 Avicennia marina HOM05D005715 ORTHO05D007160 1.2e-70 271.2 381 48.6
arahy.Tifrunner.gnm1.ann1.B5Z1I8 Arachis hypogaea HOM05D003856 ORTHO05D004547 2.1e-70 270.4 363 49.6
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 2.7e-70 270.0 350 47.7
Sed0010783 Sechium edule HOM05D005715 ORTHO05D007160 2.6e-68 263.5 385 46.0
Lj1g0016682 Lotus japonicus HOM05D005715 ORTHO05D007160 5.7e-68 262.3 364 48.9
Aqoxy6G02590 Aquilegia oxysepala HOM05D005715 ORTHO05D007160 9.7e-68 261.5 383 44.9
HanXRQChr15g0495001 Helianthus annuus HOM05D005715 ORTHO05D007160 2.6e-65 253.4 402 42.0
MSTRG.22219 Avicennia marina HOM05D005715 ORTHO05D007160 3.8e-64 249.6 370 47.0
Sc02g0007950 Simmondsia chinensis HOM05D005715 ORTHO05D007160 5.0e-64 249.2 376 45.7
EL10Ac1g02368 Beta vulgaris HOM05D005715 ORTHO05D007160 4.2e-63 246.1 398 45.5
TPR.G825 Trifolium pratense HOM05D005715 ORTHO05D007160 8.8e-61 238.4 271 52.0
BcaC05g26750 Brassica carinata HOM05D005715 ORTHO05D007160 4.5e-57 226.1 303 49.5
CsaV3_4G035110 Cucumis sativus L. HOM05D005715 ORTHO05D007160 1.3e-56 224.6 210 60.0
MBI16_g02456_MAGBIO Magnolia biondii HOM05D005715 ORTHO05D007160 1.3e-56 224.6 350 44.9
Ah.05g167050 Amaranthus hybridus HOM05D005715 ORTHO05D007160 1.5e-55 221.1 385 42.3
PSO541G4157 Papaver somniferum HOM05D005715 ORTHO05D007160 1.6e-54 217.6 384 41.7
DCAR_012819 Daucus carota HOM05D005715 ORTHO05D007160 6.8e-53 212.2 361 41.3
ECA232G0180 Erigeron canadensis HOM05D005715 ORTHO05D007160 4.4e-52 209.5 378 38.9
PSO675G4043 Papaver somniferum HOM05D005715 ORTHO05D007160 1.3e-51 208.0 388 39.4
ATR0739G069 Amborella trichopoda HOM05D005715 ORTHO05D007160 1.7e-51 207.6 387 40.3
Hma1.2p1_0819F.1_g223600 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 2.8e-51 206.8 312 48.1
Hma1.2p1_3250F.1_g334460 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 4.5e-49 199.5 273 51.3
SGA_v2.0_scaffold28G11837 Striga asiatica HOM05D005715 ORTHO05D007160 5.9e-49 199.1 365 41.4
Lj4P757T25 Lonicera japonica HOM05D005715 ORTHO05D007160 6.5e-48 195.7 362 39.2
GSVIVG01009335001 Vitis vinifera HOM05D005715 ORTHO05D007160 1.6e-46 191.0 298 44.6
Sed0026939 Sechium edule HOM05D005715 ORTHO05D007160 4.7e-46 189.5 184 55.4
AUR62022469 Chenopodium quinoa HOM05D005715 ORTHO05D007160 6.8e-45 185.7 205 52.7
SGA_v2.0_scaffold152G36807 Striga asiatica HOM05D005715 ORTHO05D007160 1.2e-44 184.9 343 41.1
AUR62037422 Chenopodium quinoa HOM05D005715 ORTHO05D007160 2.8e-43 180.3 188 54.8
Zm00001eb325870 Zea mays HOM05D005715 ORTHO05D007160 1.8e-42 177.6 364 36.0
DCAR_008858 Daucus carota HOM05D005715 ORTHO05D007160 5.9e-41 172.6 356 35.1
SalBow2G0154 Salvia bowleyana HOM05D005715 ORTHO05D007160 5.9e-41 172.6 198 48.5
BcaC01g01609 Brassica carinata HOM05D005715 ORTHO05D007160 6.6e-40 169.1 126 58.7
Zm00001eb108020 Zea mays HOM05D005715 ORTHO05D007160 6.6e-40 169.1 376 37.2
Os07g0585700 Oryza sativa ssp. japonica HOM05D005715 ORTHO05D007160 8.9e-37 158.7 373 34.6
Duzib041G0674 Durio zibethinus HOM05D005715 ORTHO05D007160 2.6e-36 157.1 123 67.5
BcaC05g26749 Brassica carinata HOM05D005715 ORTHO05D007160 1.3e-35 154.8 254 44.9
HPP92_024906 Vanilla planifolia HOM05D005715 ORTHO05D007160 5.6e-31 139.4 363 32.2
unitig_744.g24126 Utricularia gibba HOM05D005715 ORTHO05D007160 7.3e-31 139.0 371 33.2
TPR.G12997 Trifolium pratense HOM05D005715 ORTHO05D007160 3.4e-28 130.2 112 64.3
unitig_21.g20630 Utricularia gibba HOM05D005715 ORTHO05D007160 2.3e-24 117.5 187 39.0
Migut.N02788 Erythranthe guttata HOM05D005715 ORTHO05D007160 6.2e-22 109.4 132 55.3
Zm00001eb020940 Zea mays HOM05D005715 ORTHO05D007160 1.2e-17 95.1 357 30.8
Mapoly0094s0025 Marchantia polymorpha HOM05D005715 ORTHO05D007160 2.7e-17 94.0 171 37.4
Pp3c7_20380 Physcomitrium patens HOM05D005715 ORTHO05D007160 1.7e-16 91.3 156 34.6
SEGI_33265 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 3.0e-16 90.5 163 37.4
SEGI_17393 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 5.1e-16 89.7 163 36.8
Pp3c7_18640 Physcomitrium patens HOM05D005715 ORTHO05D007160 8.6e-16 89.0 160 32.5
Pp3c11_8450 Physcomitrium patens HOM05D005715 ORTHO05D007160 1.1e-15 88.6 165 37.0
C03p73810 Brassica napus HOM05D005715 ORTHO05D007160 6.2e-14 82.8 91 46.2
Pp3c11_8920 Physcomitrium patens HOM05D005715 ORTHO05D007160 4.0e-13 80.1 166 30.1
ATR0609G089 Amborella trichopoda HOM05D001735 ORTHO05D001640 1.2e-12 78.6 355 26.8
PSO063G5781 Papaver somniferum HOM05D001735 ORTHO05D001640 6.0e-09 66.2 162 30.2
PSO063G6933 Papaver somniferum HOM05D001735 ORTHO05D001640 6.0e-09 66.2 162 30.2
PSO170G3003 Papaver somniferum HOM05D001735 ORTHO05D001640 6.0e-09 66.2 162 30.2
PSO210G1866 Papaver somniferum HOM05D001735 ORTHO05D001640 6.0e-09 66.2 162 30.2
PSO339G0231 Papaver somniferum HOM05D001735 ORTHO05D001640 6.0e-09 66.2 162 30.2
Aqoxy35s001 Aquilegia oxysepala HOM05D003138 ORTHO05D003789 7.8e-09 65.9 86 47.7
PSO063G3829 Papaver somniferum HOM05D001735 ORTHO05D001640 1.3e-08 65.1 162 29.6
PSO782G3763 Papaver somniferum HOM05D001735 ORTHO05D001640 1.3e-08 65.1 162 29.0
PSO170G3598 Papaver somniferum HOM05D001735 ORTHO05D001640 2.3e-08 64.3 162 29.6
MBI11_g00913_MAGBIO Magnolia biondii HOM05D001735 ORTHO05D001640 5.6e-07 59.7 194 27.8
TAR374G1031 Trochodendron aralioides HOM05D001735 ORTHO05D001640 1.6e-06 58.2 188 25.5
Actinidia08859 Actinidia chinensis HOM05D001735 ORTHO05D001640 2.1e-06 57.8 198 26.3
Aqoxy5G03520 Aquilegia oxysepala HOM05D001735 ORTHO05D001640 2.1e-06 57.8 161 31.1
Dinv04851 Davidia involucrata HOM05D001735 ORTHO05D001640 3.6e-06 57.0 207 26.1
Nn4g22410 Nelumbo nucifera HOM05D001735 ORTHO05D001640 8.1e-06 55.8 249 23.7


User provided reference genes

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