Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g32900 Fragaria vesca HOM05D002412 ORTHO05D002516 2.3e-78 295.8 184 100.0
FAN15G1065 Fragaria x ananassa HOM05D002412 ORTHO05D002516 2.3e-70 269.2 220 70.9
FAN20G2155 Fragaria x ananassa HOM05D002412 ORTHO05D002516 1.8e-67 259.6 196 76.0
RcHm_v2.0_Chr6g0309821 Rosa chinensis HOM05D002412 ORTHO05D002516 5.6e-61 238.0 182 85.2
Prupe.1G421400 Prunus persica HOM05D002412 ORTHO05D002516 5.5e-40 168.3 186 64.0
MD15G1067500 Malus domestica HOM05D002412 ORTHO05D002516 1.9e-32 143.3 190 52.6
MD08G1080400 Malus domestica HOM05D002412 ORTHO05D002516 3.9e-30 135.6 183 51.9
FAN24G0690 Fragaria x ananassa HOM05D002412 ORTHO05D002516 3.7e-28 129.0 65 96.9
FAN27G2180 Fragaria x ananassa HOM05D002412 ORTHO05D002516 2.6e-26 122.9 65 92.3
Thecc.08G086800 Theobroma cacao HOM05D002412 ORTHO05D002516 2.4e-19 99.8 188 38.8
Lj9A329T24 Lonicera japonica HOM05D002412 ORTHO05D002516 4.1e-19 99.0 166 34.3
Lj9A332T16 Lonicera japonica HOM05D002412 ORTHO05D002516 6.9e-19 98.2 168 35.7
Manes.18G047500 Manihot esculenta HOM05D002412 ORTHO05D002516 9.1e-19 97.8 178 39.3
Potri.002G117600 Populus trichocarpa HOM05D002412 ORTHO05D002516 4.5e-18 95.5 177 38.4
QL12p038263 Quercus lobata HOM05D002412 ORTHO05D002516 7.7e-18 94.7 195 40.0
Cfa004671 Carpinus fangiana HOM05D002412 ORTHO05D002516 1.0e-17 94.4 183 35.5
TAR381G0181 Trochodendron aralioides HOM05D002412 ORTHO05D002516 1.7e-17 93.6 177 41.8
GSVIVG01037808001 Vitis vinifera HOM05D002412 ORTHO05D002516 5.0e-17 92.0 182 36.3
Sabra02G0092100 Salix brachista HOM05D002412 ORTHO05D002516 6.5e-17 91.7 170 38.8
Nn5g30629 Nelumbo nucifera HOM05D002412 ORTHO05D002516 8.5e-17 91.3 192 42.2
Lalb_Chr11g0062941 Lupinus albus HOM05D002412 ORTHO05D002516 1.1e-16 90.9 168 39.3
Rhsim06G0063100 Rhododendron simsii HOM05D002412 ORTHO05D002516 1.4e-16 90.5 190 39.5
Potri.014G015000 Populus trichocarpa HOM05D002412 ORTHO05D002516 1.9e-16 90.1 185 37.8
Ciclev10002703m.g Citrus clementina HOM05D002412 ORTHO05D002516 2.5e-16 89.7 176 37.5
Hma1.2p1_1059F.1_g253110 Hydrangea macrophylla HOM05D002412 ORTHO05D002516 2.5e-16 89.7 179 35.2
TWI12G0333 Tripterygium wilfordii HOM05D002412 ORTHO05D002516 4.2e-16 89.0 181 35.9
CANSAT25G2021 Cannabis sativa HOM05D002412 ORTHO05D002516 5.5e-16 88.6 188 39.4
QL93p0154_0003 Quercus lobata HOM05D002412 ORTHO05D002516 5.5e-16 88.6 207 38.2
Glyma.04G046600 Glycine max HOM05D002412 ORTHO05D002516 9.4e-16 87.8 186 40.3
Phvul.002G051300 Phaseolus vulgaris HOM05D002412 ORTHO05D002516 1.2e-15 87.4 173 35.3
TAR628G0919 Trochodendron aralioides HOM05D002412 ORTHO05D002516 1.2e-15 87.4 176 37.5
CiPaw.08G050800 Carya illinoinensis HOM05D002412 ORTHO05D002516 2.7e-15 86.3 184 39.1
Actinidia19303 Actinidia chinensis HOM05D002412 ORTHO05D002516 3.6e-15 85.9 171 35.7
Sed0022600 Sechium edule HOM05D002412 ORTHO05D002516 4.7e-15 85.5 179 36.3
QL11p029982 Quercus lobata HOM05D002412 ORTHO05D002516 7.9e-15 84.7 191 33.0
Phvul.001G028800 Phaseolus vulgaris HOM05D002412 ORTHO05D002516 1.4e-14 84.0 177 36.2
Actinidia10209 Actinidia chinensis HOM05D002412 ORTHO05D002516 1.8e-14 83.6 168 36.9
Duzib052G0953 Durio zibethinus HOM05D002412 ORTHO05D002516 1.8e-14 83.6 191 35.1
Glyma.14G089039 Glycine max HOM05D002412 ORTHO05D002516 1.8e-14 83.6 175 36.6
VMungo1215G2231 Vigna mungo HOM05D002412 ORTHO05D002516 1.8e-14 83.6 173 32.9
Gohir.A12G019300 Gossypium hirsutum HOM05D002412 ORTHO05D002516 3.0e-14 82.8 188 31.4
Gohir.D05G214100 Gossypium hirsutum HOM05D002412 ORTHO05D002516 3.0e-14 82.8 184 36.4
Haze_10271 Corylus avellana HOM05D002412 ORTHO05D002516 3.9e-14 82.4 186 33.3
Gohir.D12G019500 Gossypium hirsutum HOM05D002412 ORTHO05D002516 3.9e-14 82.4 174 32.8
Gorai.008G019800 Gossypium raimondii HOM05D002412 ORTHO05D002516 3.9e-14 82.4 174 32.8
Duzib041G0516 Durio zibethinus HOM05D002412 ORTHO05D002516 6.7e-14 81.6 188 35.1
Lalb_Chr21g0308011 Lupinus albus HOM05D002412 ORTHO05D002516 6.7e-14 81.6 177 33.3
CiPaw.07G173700 Carya illinoinensis HOM05D002412 ORTHO05D002516 1.1e-13 80.9 183 39.3
Glyma.10G256100 Glycine max HOM05D002412 ORTHO05D002516 1.1e-13 80.9 177 33.9
Psat0ss7070g0040 Pisum sativum HOM05D002412 ORTHO05D002516 1.5e-13 80.5 178 35.4
TWI56G0446 Tripterygium wilfordii HOM05D002412 ORTHO05D002516 1.5e-13 80.5 167 35.9
Actinidia04390 Actinidia chinensis HOM05D002412 ORTHO05D002516 2.0e-13 80.1 170 31.8
Ciclev10029343m.g Citrus clementina HOM05D002412 ORTHO05D002516 2.0e-13 80.1 179 33.5
Dinv44944 Davidia involucrata HOM05D002412 ORTHO05D002516 2.6e-13 79.7 218 33.0
Glyma.17G234000 Glycine max HOM05D002412 ORTHO05D002516 2.6e-13 79.7 181 34.3
Nn6g34504 Nelumbo nucifera HOM05D002412 ORTHO05D002516 2.6e-13 79.7 182 34.6
Psat4g227320 Pisum sativum HOM05D002412 ORTHO05D002516 3.3e-13 79.3 169 33.7
VMungo0647G1017 Vigna mungo HOM05D002412 ORTHO05D002516 3.3e-13 79.3 177 34.5
Lj1g0009349 Lotus japonicus HOM05D002412 ORTHO05D002516 4.4e-13 79.0 183 32.2
Sopen01g049190 Solanum pennellii HOM05D002412 ORTHO05D002516 5.7e-13 78.6 173 33.5
Glyma.20G135500 Glycine max HOM05D002412 ORTHO05D002516 7.4e-13 78.2 183 35.0
Gohir.A05G210800 Gossypium hirsutum HOM05D002412 ORTHO05D002516 7.4e-13 78.2 184 35.3
Glyma.01G242100 Glycine max HOM05D002412 ORTHO05D002516 9.7e-13 77.8 165 33.3
TAR376G0005 Trochodendron aralioides HOM05D002412 ORTHO05D002516 9.7e-13 77.8 180 37.8
Thecc.02G118800 Theobroma cacao HOM05D002412 ORTHO05D002516 1.3e-12 77.4 175 34.9
COL.COLO4_28483 Corchorus olitorius HOM05D002412 ORTHO05D002516 2.2e-12 76.6 80 57.5
Actinidia00360 Actinidia chinensis HOM05D002412 ORTHO05D002516 2.8e-12 76.3 179 30.7
Lj5g0023078 Lotus japonicus HOM05D002412 ORTHO05D002516 2.8e-12 76.3 176 35.2
Aqoxy6G02560 Aquilegia oxysepala HOM05D002412 ORTHO05D002516 3.7e-12 75.9 195 32.8
Glyma.11G002100 Glycine max HOM05D002412 ORTHO05D002516 3.7e-12 75.9 168 34.5
Nitab4.5_0003725g0030 Nicotiana tabacum HOM05D002412 ORTHO05D002516 4.8e-12 75.5 181 34.8
arahy.Tifrunner.gnm1.ann1.QB6IYV Arachis hypogaea HOM05D002412 ORTHO05D002516 6.3e-12 75.1 69 63.8
Medtr5g005230 Medicago truncatula HOM05D002412 ORTHO05D002516 6.3e-12 75.1 186 46.8
Duzib093G1945 Durio zibethinus HOM05D002412 ORTHO05D002516 8.2e-12 74.7 78 57.7
TPR.G33675 Trifolium pratense HOM05D002412 ORTHO05D002516 8.2e-12 74.7 179 34.6
Gohir.A02G080700 Gossypium hirsutum HOM05D002412 ORTHO05D002516 1.1e-11 74.3 183 35.0
Oeu020549.2 Olea europaea HOM05D002412 ORTHO05D002516 1.4e-11 73.9 169 32.0
CSS0002290 Camellia sinensis var. sinensis HOM05D002412 ORTHO05D002516 1.8e-11 73.6 182 34.6
MELO3C016826.2 Cucumis melo HOM05D002412 ORTHO05D002516 1.8e-11 73.6 172 34.9
CsaV3_4G035130 Cucumis sativus L. HOM05D002412 ORTHO05D002516 1.8e-11 73.6 173 34.7
HanXRQChr03g0065031 Helianthus annuus HOM05D002412 ORTHO05D002516 1.8e-11 73.6 168 32.7
Nitab4.5_0007781g0010 Nicotiana tabacum HOM05D002412 ORTHO05D002516 1.8e-11 73.6 172 30.8
Sabra14G0009000 Salix brachista HOM05D002412 ORTHO05D002516 1.8e-11 73.6 85 54.1
Solyc01g106910.4 Solanum lycopersicum HOM05D002412 ORTHO05D002516 1.8e-11 73.6 166 35.5
Sabra09G0066300 Salix brachista HOM05D002412 ORTHO05D002516 2.4e-11 73.2 185 31.9
Actinidia34355 Actinidia chinensis HOM05D002412 ORTHO05D002516 3.1e-11 72.8 174 36.2
TWI12G0423 Tripterygium wilfordii HOM05D002412 ORTHO05D002516 3.1e-11 72.8 186 36.6
vmacro19537 Vaccinium macrocarpon HOM05D002412 ORTHO05D002516 3.1e-11 72.8 179 33.0
Dinv15818 Davidia involucrata HOM05D002412 ORTHO05D002516 5.3e-11 72.0 163 30.1
Oeu048571.1 Olea europaea HOM05D002412 ORTHO05D002516 5.3e-11 72.0 91 49.5
Peaxi162Scf00081g00269 Petunia axillaris HOM05D002412 ORTHO05D002516 5.3e-11 72.0 191 33.5
Haze_22419 Corylus avellana HOM05D002412 ORTHO05D002516 7.0e-11 71.6 95 50.5
DCAR_001741 Daucus carota HOM05D002412 ORTHO05D002516 7.0e-11 71.6 172 35.5
Rhsim05G0091500 Rhododendron simsii HOM05D002412 ORTHO05D002516 9.1e-11 71.2 73 58.9
TPR.G8322 Trifolium pratense HOM05D002412 ORTHO05D002516 9.1e-11 71.2 173 31.8
Gohir.D02G088500 Gossypium hirsutum HOM05D002412 ORTHO05D002516 1.6e-10 70.5 183 33.9
Nitab4.5_0002040g0070 Nicotiana tabacum HOM05D002412 ORTHO05D002516 1.6e-10 70.5 180 29.4
PGSC0003DMG400025836 Solanum tuberosum HOM05D002412 ORTHO05D002516 1.6e-10 70.5 182 36.8
AUR62041661 Chenopodium quinoa HOM05D002412 ORTHO05D002516 2.0e-10 70.1 162 38.9
Lalb_Chr02g0144931 Lupinus albus HOM05D002412 ORTHO05D002516 2.0e-10 70.1 181 30.4
MSTRG.24380 Avicennia marina HOM05D002412 ORTHO05D002516 2.6e-10 69.7 73 53.4
CSS0009619 Camellia sinensis var. sinensis HOM05D002412 ORTHO05D002516 2.6e-10 69.7 177 37.3
Gorai.005G099200 Gossypium raimondii HOM05D002412 ORTHO05D002516 2.6e-10 69.7 183 33.9
Phvul.007G046700 Phaseolus vulgaris HOM05D002412 ORTHO05D002516 2.6e-10 69.7 162 31.5
MELO3C018019.2 Cucumis melo HOM05D002412 ORTHO05D002516 3.5e-10 69.3 184 33.2
Medtr1g017890 Medicago truncatula HOM05D002412 ORTHO05D002516 3.5e-10 69.3 77 53.2
VMungo0720G0862 Vigna mungo HOM05D002412 ORTHO05D002516 3.5e-10 69.3 173 32.9
Prupe.8G147000 Prunus persica HOM05D002412 ORTHO05D002516 7.7e-10 68.2 193 31.6
Dinv42242 Davidia involucrata HOM05D002412 ORTHO05D002516 1.0e-09 67.8 180 31.7
PGSC0003DMG400010615 Solanum tuberosum HOM05D002412 ORTHO05D002516 1.0e-09 67.8 83 48.2
Nitab4.5_0000497g0080 Nicotiana tabacum HOM05D002412 ORTHO05D002516 1.3e-09 67.4 74 52.7
Sopen04g031330 Solanum pennellii HOM05D002412 ORTHO05D002516 1.3e-09 67.4 204 30.4
Ca_11030_v3 Cicer arietinum L. HOM05D002412 ORTHO05D002516 1.7e-09 67.0 186 34.4
arahy.Tifrunner.gnm1.ann1.3RQF03 Arachis hypogaea HOM05D002412 ORTHO05D002516 2.2e-09 66.6 66 62.1
CsaV3_4G000130 Cucumis sativus L. HOM05D002412 ORTHO05D002516 2.2e-09 66.6 196 32.7
Gorai.009G220800 Gossypium raimondii HOM05D002412 ORTHO05D002516 2.2e-09 66.6 95 49.5
TPR.G13172 Trifolium pratense HOM05D002412 ORTHO05D002516 2.2e-09 66.6 92 48.9
CiPaw.06G164900 Carya illinoinensis HOM05D002412 ORTHO05D002516 2.9e-09 66.2 193 27.5
Lalb_Chr22g0355701 Lupinus albus HOM05D002412 ORTHO05D002516 2.9e-09 66.2 67 56.7
Potri.001G292100 Populus trichocarpa HOM05D002412 ORTHO05D002516 2.9e-09 66.2 207 27.5
ECA236G2487 Erigeron canadensis HOM05D002412 ORTHO05D002516 3.8e-09 65.9 170 28.8
Lj5g0012685 Lotus japonicus HOM05D002412 ORTHO05D002516 3.8e-09 65.9 180 30.0
Lalb_Chr06g0165021 Lupinus albus HOM05D002412 ORTHO05D002516 3.8e-09 65.9 98 48.0
Oeu037285.1 Olea europaea HOM05D002412 ORTHO05D002516 3.8e-09 65.9 181 29.3
BraA01t00437Z Brassica rapa HOM05D002412 ORTHO05D002516 5.0e-09 65.5 176 29.0
THA.LOC104807210 Tarenaya hassleriana HOM05D002412 ORTHO05D002516 6.5e-09 65.1 184 28.3
TWI59G0380 Tripterygium wilfordii HOM05D002412 ORTHO05D002516 6.5e-09 65.1 185 29.7
Sed0020406 Sechium edule HOM05D002412 ORTHO05D002516 8.5e-09 64.7 176 31.2
Solyc04g077690.3 Solanum lycopersicum HOM05D002412 ORTHO05D002516 8.5e-09 64.7 199 30.2
DCAR_009875 Daucus carota HOM05D002412 ORTHO05D002516 1.1e-08 64.3 176 33.5
Psat6g017720 Pisum sativum HOM05D002412 ORTHO05D002516 1.1e-08 64.3 90 48.9
Sed0010289 Sechium edule HOM05D002412 ORTHO05D002516 1.1e-08 64.3 173 30.6
GSVIVG01009322001 Vitis vinifera HOM05D002412 ORTHO05D002516 1.5e-08 63.9 118 36.4
Gohir.A06G024600 Gossypium hirsutum HOM05D002412 ORTHO05D002516 1.9e-08 63.5 78 57.7
Oeu036975.1 Olea europaea HOM05D002412 ORTHO05D002516 1.9e-08 63.5 73 53.4
A01p04520 Brassica napus HOM05D002412 ORTHO05D002516 2.5e-08 63.2 173 27.2
Rhsim05G0092300 Rhododendron simsii HOM05D002412 ORTHO05D002516 2.5e-08 63.2 76 51.3
RhsimUnG0041400 Rhododendron simsii HOM05D002412 ORTHO05D002516 3.2e-08 62.8 154 29.9
RhsimUnG0123400 Rhododendron simsii HOM05D002412 ORTHO05D002516 3.2e-08 62.8 154 29.9
MSTRG.22217 Avicennia marina HOM05D002412 ORTHO05D002516 4.2e-08 62.4 73 50.7
Ca_13210_v3 Cicer arietinum L. HOM05D002412 ORTHO05D002516 4.2e-08 62.4 89 47.2
Potri.009G086600 Populus trichocarpa HOM05D002412 ORTHO05D002516 4.2e-08 62.4 187 29.9
Cc10_g05040 Coffea canephora HOM05D002412 ORTHO05D002516 5.5e-08 62.0 98 38.8
ClCG10G010090 Citrullus lanatus HOM05D002412 ORTHO05D002516 7.2e-08 61.6 190 32.1
DCAR_020053 Daucus carota HOM05D002412 ORTHO05D002516 7.2e-08 61.6 178 34.8
Gohir.D06G021700 Gossypium hirsutum HOM05D002412 ORTHO05D002516 7.2e-08 61.6 178 35.4
Sabra16G0182100 Salix brachista HOM05D002412 ORTHO05D002516 7.2e-08 61.6 193 28.0
ECA246G2811 Erigeron canadensis HOM05D002412 ORTHO05D002516 9.4e-08 61.2 68 54.4
SalBow6G4199 Salvia bowleyana HOM05D002412 ORTHO05D002516 9.4e-08 61.2 69 50.7
Hund05293 Selenicereus undatus HOM05D002412 ORTHO05D002516 1.2e-07 60.8 75 46.7
AUR62022466 Chenopodium quinoa HOM05D002412 ORTHO05D002516 1.6e-07 60.5 81 42.0
Gorai.010G026300 Gossypium raimondii HOM05D002412 ORTHO05D002516 1.6e-07 60.5 178 33.7
Nitab4.5_0003953g0040 Nicotiana tabacum HOM05D002412 ORTHO05D002516 1.6e-07 60.5 185 30.3
CSS0003834 Camellia sinensis var. sinensis HOM05D002412 ORTHO05D002516 2.7e-07 59.7 100 41.0
Medtr1g106080 Medicago truncatula HOM05D002412 ORTHO05D002516 2.7e-07 59.7 184 30.4
Sed0002993 Sechium edule HOM05D002412 ORTHO05D002516 2.7e-07 59.7 175 32.6
C01p04900 Brassica napus HOM05D002412 ORTHO05D002516 3.6e-07 59.3 176 26.7
ClCG05G020680 Citrullus lanatus HOM05D002412 ORTHO05D002516 3.6e-07 59.3 158 32.3
PSO017G0848 Papaver somniferum HOM05D002412 ORTHO05D002516 3.6e-07 59.3 182 30.8
EL10Ac1g02365 Beta vulgaris HOM05D002412 ORTHO05D002516 6.1e-07 58.5 72 43.1
CARHR241890 Cardamine hirsuta HOM05D002412 ORTHO05D002516 6.1e-07 58.5 172 29.1
TWI14G1286 Tripterygium wilfordii HOM05D002412 ORTHO05D002516 6.1e-07 58.5 187 32.6
Oeu037507.3 Olea europaea HOM05D006761 ORTHO05D002516 8.0e-07 58.2 76 48.7
Peaxi162Scf00160g00517 Petunia axillaris HOM05D002412 ORTHO05D002516 8.0e-07 58.2 179 29.6
Sc15g0005620 Simmondsia chinensis HOM05D002412 ORTHO05D002516 8.0e-07 58.2 170 31.8
ATR0739G138 Amborella trichopoda HOM05D002412 ORTHO05D002516 1.0e-06 57.8 62 58.1
A03p62330 Brassica napus HOM05D002412 ORTHO05D002516 1.0e-06 57.8 178 27.0
BraA03t15307Z Brassica rapa HOM05D004087 ORTHO05D004787 1.0e-06 57.8 163 27.0
CAN.G975.16 Capsicum annuum HOM05D002412 ORTHO05D002516 1.0e-06 57.8 167 29.9
Cc00_g17020 Coffea canephora HOM05D002412 ORTHO05D002516 1.0e-06 57.8 71 43.7
CAN.G606.66 Capsicum annuum HOM05D002412 ORTHO05D002516 1.4e-06 57.4 181 26.5
TPR.G21149 Trifolium pratense HOM05D002412 ORTHO05D002516 1.4e-06 57.4 184 29.9
Dinv39215 Davidia involucrata HOM05D002412 ORTHO05D002516 2.3e-06 56.6 179 27.9
MSTRG.1024 Avicennia marina HOM05D002412 ORTHO05D002516 3.0e-06 56.2 73 52.1
BcaC01g00964 Brassica carinata HOM05D002412 ORTHO05D002516 3.0e-06 56.2 156 32.1
SGA_v2.0_scaffold225G43055 Striga asiatica HOM05D002412 ORTHO05D002516 3.0e-06 56.2 174 40.8
THA.LOC104824967 Tarenaya hassleriana HOM05D002412 ORTHO05D002516 3.0e-06 56.2 189 32.3
Atru.chr13.848 Acer truncatum HOM05D002412 ORTHO05D002516 4.0e-06 55.8 102 45.1
BcaNung04326 Brassica carinata HOM05D004087 ORTHO05D004787 4.0e-06 55.8 164 28.7
Sopen12g030300 Solanum pennellii HOM05D002412 ORTHO05D002516 4.0e-06 55.8 187 31.0
Solyc12g088300.2 Solanum lycopersicum HOM05D002412 ORTHO05D002516 6.7e-06 55.1 188 31.9
BcaNung02921 Brassica carinata HOM05D004087 ORTHO05D004787 8.8e-06 54.7 165 27.9
BolC7t46433H Brassica oleracea HOM05D002412 ORTHO05D002516 8.8e-06 54.7 164 27.4
PGR031G1707 Punica granatum HOM05D045285 ORTHO05D050607 8.8e-06 54.7 80 43.8
TAR633G1602 Trochodendron aralioides HOM05D002412 ORTHO05D002516 8.8e-06 54.7 97 45.4
vmacro01953 Vaccinium macrocarpon HOM05D002412 ORTHO05D002516 8.8e-06 54.7 63 52.4


User provided reference genes

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