Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g32650 Fragaria vesca HOM05D007224 ORTHO05D009169 4.5e-128 461.5 265 100.0
FAN24G0100 Fragaria x ananassa HOM05D007224 ORTHO05D009169 9.7e-123 443.7 264 97.0
FAN20G0095 Fragaria x ananassa HOM05D007224 ORTHO05D009169 4.4e-115 418.3 267 82.4
FAN27G0962 Fragaria x ananassa HOM05D007224 ORTHO05D009169 5.7e-115 417.9 263 83.7
RcHm_v2.0_Chr6g0310081 Rosa chinensis HOM05D007224 ORTHO05D009169 5.9e-112 407.9 270 84.8
MD15G1064800 Malus domestica HOM05D007224 ORTHO05D009169 2.3e-95 352.8 275 73.1
MD08G1077300 Malus domestica HOM05D007224 ORTHO05D009169 1.3e-90 337.0 272 71.0
FAN15G3290 Fragaria x ananassa HOM05D007224 ORTHO05D009169 3.7e-90 335.5 178 92.7
Prupe.1G418700 Prunus persica HOM05D007224 ORTHO05D009169 2.0e-83 313.2 270 66.7
TWI12G0175 Tripterygium wilfordii HOM05D007224 ORTHO05D009169 1.7e-82 310.1 268 63.1
TWI56G1112 Tripterygium wilfordii HOM05D007224 ORTHO05D009169 3.7e-82 308.9 266 62.0
GSVIVG01009296001 Vitis vinifera HOM05D007224 ORTHO05D009169 4.9e-82 308.5 268 61.2
CANSAT56G0920 Cannabis sativa HOM05D007224 ORTHO05D009169 6.4e-82 308.1 268 60.4
PSO541G3785 Papaver somniferum HOM05D007224 ORTHO05D009169 8.3e-82 307.8 271 62.4
PSO675G4824 Papaver somniferum HOM05D007224 ORTHO05D009169 8.3e-82 307.8 273 69.6
CsaV3_2G025920 Cucumis sativus L. HOM05D007224 ORTHO05D009169 1.4e-81 307.0 273 60.4
Cfa013733 Carpinus fangiana HOM05D007224 ORTHO05D009169 1.9e-81 306.6 269 66.5
MELO3C010785.2 Cucumis melo HOM05D007224 ORTHO05D009169 4.1e-81 305.4 273 60.1
CiPaw.07G171700 Carya illinoinensis HOM05D007224 ORTHO05D009169 2.0e-80 303.1 270 63.0
Lj5g0004917 Lotus japonicus HOM05D007224 ORTHO05D009169 2.7e-80 302.8 268 63.8
Atru.chr13.874 Acer truncatum HOM05D007224 ORTHO05D009169 1.7e-79 300.1 266 59.0
Solyc04g077500.4 Solanum lycopersicum HOM05D007224 ORTHO05D009169 1.6e-77 293.5 284 56.7
CAN.G1239.16 Capsicum annuum HOM05D007224 ORTHO05D009169 2.1e-77 293.1 275 57.8
Sopen04g031100 Solanum pennellii HOM05D007224 ORTHO05D009169 2.8e-77 292.7 284 56.7
Ciclev10002194m.g Citrus clementina HOM05D007224 ORTHO05D009169 3.6e-77 292.4 271 59.8
PGSC0003DMG400004920 Solanum tuberosum HOM05D007224 ORTHO05D009169 3.6e-77 292.4 284 62.0
Duzib116G0584 Durio zibethinus HOM05D007224 ORTHO05D009169 1.1e-76 290.8 270 57.8
Nitab4.5_0001494g0030 Nicotiana tabacum HOM05D007224 ORTHO05D009169 1.1e-76 290.8 280 60.4
Gohir.D06G023300 Gossypium hirsutum HOM05D007224 ORTHO05D009169 1.8e-76 290.0 271 59.4
Gorai.010G028000 Gossypium raimondii HOM05D007224 ORTHO05D009169 2.3e-76 289.7 269 57.6
ClCG08G016710 Citrullus lanatus HOM05D007224 ORTHO05D009169 3.1e-76 289.3 263 59.3
Haze_22381 Corylus avellana HOM05D007224 ORTHO05D009169 8.9e-76 287.7 258 62.0
Lj4A752T19 Lonicera japonica HOM05D007224 ORTHO05D009169 1.7e-74 283.5 273 58.6
Gohir.A06G026200 Gossypium hirsutum HOM05D007224 ORTHO05D009169 2.2e-74 283.1 271 59.4
Potri.002G114900 Populus trichocarpa HOM05D007224 ORTHO05D009169 2.2e-74 283.1 266 57.9
Sc26g0004240 Simmondsia chinensis HOM05D007224 ORTHO05D009169 2.9e-74 282.7 179 74.9
TAR628G0831 Trochodendron aralioides HOM05D007224 ORTHO05D009169 2.9e-74 282.7 259 57.1
Sp1g33790 Schrenkiella parvula HOM05D007224 ORTHO05D009169 1.1e-73 280.8 179 74.3
BcaC08g42889 Brassica carinata HOM05D007224 ORTHO05D009169 1.4e-73 280.4 179 73.7
A10p07160 Brassica napus HOM05D007224 ORTHO05D009169 1.9e-73 280.0 179 73.2
Ca_06981_v3 Cicer arietinum L. HOM05D007224 ORTHO05D009169 2.4e-73 279.6 261 58.2
Hund05274 Selenicereus undatus HOM05D007224 ORTHO05D009169 3.2e-73 279.3 278 55.8
MSTRG.22207 Avicennia marina HOM05D007224 ORTHO05D009169 5.4e-73 278.5 269 57.6
DCAR_009866 Daucus carota HOM05D007224 ORTHO05D009169 5.4e-73 278.5 258 57.8
Thhalv10011734m.g Eutrema salsugineum HOM05D007224 ORTHO05D009169 1.2e-72 277.3 179 72.1
CSS0049759 Camellia sinensis var. sinensis HOM05D007224 ORTHO05D009169 4.6e-72 275.4 177 75.1
TPR.G13169 Trifolium pratense HOM05D007224 ORTHO05D009169 4.6e-72 275.4 261 56.3
THA.LOC104799830 Tarenaya hassleriana HOM05D007224 ORTHO05D009169 6.0e-72 275.0 275 56.0
CARHR036150 Cardamine hirsuta HOM05D007224 ORTHO05D009169 7.8e-72 274.6 180 75.0
HanXRQChr04g0110471 Helianthus annuus HOM05D007224 ORTHO05D009169 7.8e-72 274.6 262 61.1
Ah.11g039150 Amaranthus hybridus HOM05D007224 ORTHO05D009169 1.0e-71 274.2 275 60.0
AL1G52590 Arabidopsis lyrata HOM05D007224 ORTHO05D009169 2.3e-71 273.1 182 73.6
PGR083G2708 Punica granatum HOM05D007224 ORTHO05D009169 3.0e-71 272.7 268 65.7
AT1G44920 Arabidopsis thaliana HOM05D007224 ORTHO05D009169 6.6e-71 271.6 181 72.9
Actinidia10224 Actinidia chinensis HOM05D007224 ORTHO05D009169 8.6e-71 271.2 273 54.9
BcaB07g33899 Brassica carinata HOM05D007224 ORTHO05D009169 8.6e-71 271.2 179 72.6
Lsat_1_v5_gn_0_47281 Lactuca sativa HOM05D007224 ORTHO05D009169 1.1e-70 270.8 256 54.7
Manes.18G049850 Manihot esculenta HOM05D007224 ORTHO05D009169 1.5e-70 270.4 271 60.9
Psat6g017040 Pisum sativum HOM05D007224 ORTHO05D009169 1.5e-70 270.4 268 55.2
Nn5g30669 Nelumbo nucifera HOM05D007224 ORTHO05D009169 1.9e-70 270.0 266 53.4
Thecc.08G084200 Theobroma cacao HOM05D007224 ORTHO05D009169 1.9e-70 270.0 272 58.8
Carub.0001s3542 Capsella rubella HOM05D007224 ORTHO05D009169 3.3e-70 269.2 269 57.2
CDE04G2175 Ceratophyllum demersum HOM05D007224 ORTHO05D009169 3.3e-70 269.2 270 54.1
Peaxi162Scf01161g00120 Petunia axillaris HOM05D007224 ORTHO05D009169 2.1e-69 266.5 272 53.3
Rhsim06G0064800 Rhododendron simsii HOM05D007224 ORTHO05D009169 3.6e-69 265.8 261 62.8
EL10Ac1g02348 Beta vulgaris HOM05D007224 ORTHO05D009169 6.2e-69 265.0 179 70.4
SalBow7G4028 Salvia bowleyana HOM05D007224 ORTHO05D009169 1.8e-68 263.5 267 53.6
BolC6t35243H Brassica oleracea HOM05D007224 ORTHO05D009169 2.3e-68 263.1 296 51.7
C06p01100 Brassica napus HOM05D007224 ORTHO05D009169 3.1e-68 262.7 170 72.4
vmacro21415 Vaccinium macrocarpon HOM05D007224 ORTHO05D009169 3.1e-68 262.7 195 67.2
Lalb_Chr22g0355811 Lupinus albus HOM05D007224 ORTHO05D009169 5.2e-68 261.9 274 53.6
Migut.C00453 Erythranthe guttata HOM05D007224 ORTHO05D009169 6.8e-68 261.5 264 54.5
Glyma.17G232300 Glycine max HOM05D007224 ORTHO05D009169 2.0e-67 260.0 273 60.1
Phvul.001G031100 Phaseolus vulgaris HOM05D007224 ORTHO05D009169 3.4e-67 259.2 258 56.2
Dinv44928 Davidia involucrata HOM05D007224 ORTHO05D009169 4.4e-67 258.8 269 58.4
VMungo0647G2475 Vigna mungo HOM05D007224 ORTHO05D009169 9.9e-67 257.7 245 56.3
Medtr1g017450 Medicago truncatula HOM05D007224 ORTHO05D009169 4.9e-66 255.4 240 58.3
BraA10t42965Z Brassica rapa HOM05D007224 ORTHO05D009169 6.4e-66 255.0 195 64.1
Cc10_g07670 Coffea canephora HOM05D007224 ORTHO05D009169 1.1e-65 254.2 271 53.5
Aa31LG7G10090 Aethionema arabicum HOM05D007224 ORTHO05D009169 2.1e-64 250.0 283 50.9
ATR0739G089 Amborella trichopoda HOM05D007224 ORTHO05D009169 2.7e-64 249.6 179 68.7
Sabra02G0090900 Salix brachista HOM05D007224 ORTHO05D009169 1.0e-63 247.7 313 46.6
SGA_v2.0_scaffold238G43907 Striga asiatica HOM05D007224 ORTHO05D009169 1.0e-63 247.7 261 52.1
unitig_52.g17426 Utricularia gibba HOM05D007224 ORTHO05D009169 5.1e-63 245.4 179 64.2
Nitab4.5_0010252g0010 Nicotiana tabacum HOM05D007224 ORTHO05D009169 3.3e-62 242.7 271 55.7
MBI16_g06074_MAGBIO Magnolia biondii HOM05D007224 ORTHO05D009169 9.5e-62 241.1 256 52.3
HPP92_007712 Vanilla planifolia HOM05D007224 ORTHO05D009169 1.2e-61 240.7 269 50.6
Zm00001eb056020 Zea mays HOM05D007224 ORTHO05D009169 1.6e-61 240.4 268 49.3
Aqoxy6G02448 Aquilegia oxysepala HOM05D007224 ORTHO05D009169 4.7e-61 238.8 266 56.4
COL.COLO4_28456 Corchorus olitorius HOM05D007224 ORTHO05D009169 8.9e-60 234.6 274 48.9
arahy.Tifrunner.gnm1.ann1.TQ0B6U Arachis hypogaea HOM05D007224 ORTHO05D009169 4.4e-59 232.3 184 64.1
Os03g0729100 Oryza sativa ssp. japonica HOM05D007224 ORTHO05D009169 7.8e-56 221.5 173 61.8
ECA232G4225 Erigeron canadensis HOM05D007224 ORTHO05D009169 6.2e-53 211.8 137 73.0
Mapoly0039s0075 Marchantia polymorpha HOM05D007224 ORTHO05D009169 1.4e-49 200.7 179 55.3
Pp3c6_15140 Physcomitrium patens HOM05D007224 ORTHO05D009169 2.7e-48 196.4 180 52.8
Actinidia19293 Actinidia chinensis HOM05D007224 ORTHO05D009169 7.8e-48 194.9 215 61.4
Haze_22389 Corylus avellana HOM05D007224 ORTHO05D009169 8.7e-47 191.4 198 59.1
arahy.Tifrunner.gnm1.ann1.XZQ8AB Arachis hypogaea HOM05D007224 ORTHO05D009169 1.5e-46 190.7 165 58.8
SMO147G0155 Selaginella moellendorffii HOM05D007224 ORTHO05D009169 1.1e-44 184.5 178 51.1
Sed0020426 Sechium edule HOM05D007224 ORTHO05D009169 2.2e-42 176.8 198 50.5
CDE07G0245 Ceratophyllum demersum HOM05D007224 ORTHO05D009169 6.4e-42 175.3 228 45.2
CBR_g45556 Chara braunii HOM05D000019 ORTHO05D000002 3.5e-40 169.5 176 50.0
Cre13.g569250 Chlamydomonas reinhardtii HOM05D007224 ORTHO05D009169 2.7e-32 143.3 172 48.3
AUR62024535 Chenopodium quinoa HOM05D007224 ORTHO05D009169 7.9e-32 141.7 81 82.7
AUR62033890 Chenopodium quinoa HOM05D007224 ORTHO05D009169 4.3e-30 136.0 212 44.3
Glyma.14G089100 Glycine max HOM05D007224 ORTHO05D009169 2.8e-29 133.3 91 72.5
Zm00001eb035950 Zea mays HOM05D007224 ORTHO05D009169 3.2e-25 119.8 90 62.2
MCO05G240 Micromonas commoda HOM05D007224 ORTHO05D009169 4.6e-24 115.9 171 39.8
Cpa.g.sc2059.2 Carica papaya HOM05D007224 ORTHO05D009169 1.0e-23 114.8 159 47.8
Zm00001eb141580 Zea mays HOM05D007224 ORTHO05D445531 3.6e-16 89.7 95 50.5
Sabra08G0162900 Salix brachista HOM05D003359 ORTHO05D007088 7.7e-11 72.0 42 81.0


User provided reference genes

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