Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g32510 Fragaria vesca HOM05D007406 ORTHO05D009434 6.6e-117 424.1 219 100.0
FAN24G2334 Fragaria x ananassa HOM05D007406 ORTHO05D009434 1.4e-114 416.4 219 98.6
FAN27G1006 Fragaria x ananassa HOM05D007406 ORTHO05D009434 4.3e-108 394.8 217 94.0
RcHm_v2.0_Chr6g0310141 Rosa chinensis HOM05D007406 ORTHO05D009434 6.8e-106 387.5 219 91.8
Prupe.1G418200 Prunus persica HOM05D007406 ORTHO05D009434 7.8e-94 347.4 220 83.2
MD15G1064200 Malus domestica HOM05D007406 ORTHO05D009434 9.6e-92 340.5 217 83.4
Prupe.6G207800 Prunus persica HOM05D007406 ORTHO05D009434 8.9e-90 334.0 209 82.8
Cpa.g.sc160.29 Carica papaya HOM05D007406 ORTHO05D009434 2.2e-88 329.3 219 77.2
TAR628G0119 Trochodendron aralioides HOM05D007406 ORTHO05D009434 3.2e-87 325.5 217 76.5
Thecc.08G083300 Theobroma cacao HOM05D007406 ORTHO05D009434 7.1e-87 324.3 216 76.9
TWI36G1291 Tripterygium wilfordii HOM05D007406 ORTHO05D009434 7.1e-87 324.3 219 76.3
Ciclev10002365m.g Citrus clementina HOM05D007406 ORTHO05D009434 4.6e-86 321.6 219 74.9
Cfa013727 Carpinus fangiana HOM05D007406 ORTHO05D009434 2.3e-85 319.3 219 75.3
Atru.chr13.879 Acer truncatum HOM05D007406 ORTHO05D009434 5.1e-85 318.2 218 76.1
Manes.18G050400 Manihot esculenta HOM05D007406 ORTHO05D009434 8.7e-85 317.4 219 75.3
Duzib041G0608 Durio zibethinus HOM05D007406 ORTHO05D009434 3.3e-84 315.5 214 74.8
Phvul.001G031500 Phaseolus vulgaris HOM05D007406 ORTHO05D009434 7.3e-84 314.3 227 73.6
Potri.002G114400 Populus trichocarpa HOM05D007406 ORTHO05D009434 1.6e-83 313.2 219 74.0
CiPaw.08G053000 Carya illinoinensis HOM05D007406 ORTHO05D009434 2.1e-83 312.8 217 74.2
Actinidia10229 Actinidia chinensis HOM05D007406 ORTHO05D009434 6.2e-83 311.2 206 75.7
MELO3C016844.2 Cucumis melo HOM05D007406 ORTHO05D009434 6.2e-83 311.2 217 74.7
Gohir.A02G079900 Gossypium hirsutum HOM05D007406 ORTHO05D009434 1.1e-82 310.5 214 72.4
ClCG05G017610 Citrullus lanatus HOM05D007406 ORTHO05D009434 1.4e-82 310.1 217 74.7
VMungo0647G2305 Vigna mungo HOM05D007406 ORTHO05D009434 1.4e-82 310.1 223 74.9
CANSAT25G0188 Cannabis sativa HOM05D007406 ORTHO05D009434 1.8e-82 309.7 219 73.5
Haze_22374 Corylus avellana HOM05D007406 ORTHO05D009434 2.4e-82 309.3 247 67.6
arahy.Tifrunner.gnm1.ann1.GL3N7R Arachis hypogaea HOM05D007406 ORTHO05D009434 4.0e-82 308.5 223 74.4
Gohir.D02G087800 Gossypium hirsutum HOM05D007406 ORTHO05D009434 9.0e-82 307.4 214 72.4
Gorai.005G098400 Gossypium raimondii HOM05D007406 ORTHO05D009434 1.2e-81 307.0 214 72.4
Sed0009876 Sechium edule HOM05D007406 ORTHO05D009434 2.0e-81 306.2 217 74.2
Hma1.2p1_1926F.1_g307730 Hydrangea macrophylla HOM05D007406 ORTHO05D009434 5.8e-81 304.7 217 72.8
Aqoxy6G02928 Aquilegia oxysepala HOM05D007406 ORTHO05D009434 7.6e-81 304.3 216 69.9
BolC5t34221H Brassica oleracea HOM05D007406 ORTHO05D009434 1.3e-80 303.5 218 70.6
HanXRQChr08g0226371 Helianthus annuus HOM05D007406 ORTHO05D009434 1.3e-80 303.5 219 72.1
BraA05t22509Z Brassica rapa HOM05D007406 ORTHO05D009434 2.2e-80 302.8 218 71.1
TPR.G13149 Trifolium pratense HOM05D007406 ORTHO05D009434 6.4e-80 301.2 221 71.0
CAN.G416.4 Capsicum annuum HOM05D007406 ORTHO05D009434 1.9e-79 299.7 215 71.2
Lj5g0009058 Lotus japonicus HOM05D007406 ORTHO05D009434 1.9e-79 299.7 223 72.2
PGR031G1333 Punica granatum HOM05D007406 ORTHO05D009434 1.9e-79 299.7 228 69.7
AL3G23880 Arabidopsis lyrata HOM05D007406 ORTHO05D009434 3.2e-79 298.9 219 73.1
AT3G12210 Arabidopsis thaliana HOM05D007406 ORTHO05D009434 3.2e-79 298.9 219 73.5
Thhalv10021516m.g Eutrema salsugineum HOM05D007406 ORTHO05D009434 3.2e-79 298.9 219 72.6
Carub.0003s1158 Capsella rubella HOM05D007406 ORTHO05D009434 4.2e-79 298.5 219 72.1
Solyc04g077450.3 Solanum lycopersicum HOM05D007406 ORTHO05D009434 5.4e-79 298.1 216 71.3
Medtr1g017290 Medicago truncatula HOM05D007406 ORTHO05D009434 9.3e-79 297.4 220 68.2
vmacro21408 Vaccinium macrocarpon HOM05D007406 ORTHO05D009434 1.2e-78 297.0 242 65.3
Sp3g10440 Schrenkiella parvula HOM05D007406 ORTHO05D009434 1.6e-78 296.6 219 72.1
Ca_06987_v3 Cicer arietinum L. HOM05D007406 ORTHO05D009434 2.1e-78 296.2 221 69.7
Sopen04g031040 Solanum pennellii HOM05D007406 ORTHO05D009434 2.1e-78 296.2 220 71.8
THA.LOC104799833 Tarenaya hassleriana HOM05D007406 ORTHO05D009434 2.1e-78 296.2 197 75.1
Cc10_g07740 Coffea canephora HOM05D007406 ORTHO05D009434 4.6e-78 295.0 219 69.4
Migut.N02801 Erythranthe guttata HOM05D007406 ORTHO05D009434 6.0e-78 294.7 217 69.1
Glyma.14G090300 Glycine max HOM05D007406 ORTHO05D009434 1.0e-77 293.9 223 70.4
DCAR_020070 Daucus carota HOM05D007406 ORTHO05D009434 1.7e-77 293.1 223 67.7
Nn6g34540 Nelumbo nucifera HOM05D007406 ORTHO05D009434 1.7e-77 293.1 219 68.5
Lalb_Chr14g0368031 Lupinus albus HOM05D007406 ORTHO05D009434 5.1e-77 291.6 222 69.8
arahy.Tifrunner.gnm1.ann1.V0H9ZK Arachis hypogaea HOM05D007406 ORTHO05D009434 8.7e-77 290.8 223 71.3
Eucgr.F02216 Eucalyptus grandis HOM05D007406 ORTHO05D009434 1.9e-76 289.7 219 69.4
Lsat_1_v5_gn_1_721 Lactuca sativa HOM05D007406 ORTHO05D009434 4.3e-76 288.5 202 71.8
Aa31LG11G6470 Aethionema arabicum HOM05D007406 ORTHO05D009434 9.6e-76 287.3 219 69.4
AUR62034986 Chenopodium quinoa HOM05D007406 ORTHO05D009434 1.3e-75 287.0 219 70.3
PSO017G2718 Papaver somniferum HOM05D007406 ORTHO05D009434 6.2e-75 284.6 219 66.7
Hund05268 Selenicereus undatus HOM05D007406 ORTHO05D009434 6.9e-74 281.2 215 69.3
ECA247G1434 Erigeron canadensis HOM05D007406 ORTHO05D009434 1.7e-72 276.6 224 63.8
Rhsim06G0065300 Rhododendron simsii HOM05D007406 ORTHO05D009434 3.8e-72 275.4 167 81.4
EL10Ac1g02342 Beta vulgaris HOM05D007406 ORTHO05D009434 8.4e-72 274.2 217 69.6
MSTRG.22203 Avicennia marina HOM05D007406 ORTHO05D009434 2.4e-71 272.7 215 64.2
Ah.05g166920 Amaranthus hybridus HOM05D007406 ORTHO05D009434 4.2e-71 271.9 220 68.2
BcaC05g29272 Brassica carinata HOM05D007406 ORTHO05D009434 9.3e-71 270.8 167 78.4
Nitab4.5_0007871g0020 Nicotiana tabacum HOM05D007406 ORTHO05D009434 1.6e-70 270.0 219 67.1
CSS0019783 Camellia sinensis var. sinensis HOM05D007406 ORTHO05D009434 3.5e-70 268.9 167 79.6
ATR0739G008 Amborella trichopoda HOM05D007406 ORTHO05D009434 3.0e-69 265.8 218 62.8
COL.COLO4_28451 Corchorus olitorius HOM05D007406 ORTHO05D009434 3.0e-69 265.8 193 71.0
PSO170G2494 Papaver somniferum HOM05D007406 ORTHO05D009434 6.7e-69 264.6 183 71.6
CsaV3_4G035340 Cucumis sativus L. HOM05D007406 ORTHO05D009434 8.7e-69 264.2 182 73.6
SGA_v2.0_scaffold28G11843 Striga asiatica HOM05D007406 ORTHO05D009434 8.7e-69 264.2 208 67.8
SalBow2G1084 Salvia bowleyana HOM05D007406 ORTHO05D009434 1.1e-68 263.8 219 61.6
MBI16_g35726_MAGBIO Magnolia biondii HOM05D007406 ORTHO05D009434 1.6e-67 260.0 234 59.0
Sabra02G0090500 Salix brachista HOM05D000717 ORTHO05D000555 2.1e-67 259.6 167 77.2
Zm00001eb215640 Zea mays HOM05D007406 ORTHO05D009434 5.3e-66 255.0 213 62.4
Lj4C76T9 Lonicera japonica HOM05D007406 ORTHO05D009434 1.9e-63 246.5 155 78.7
Oeu053653.1 Olea europaea HOM05D007406 ORTHO05D009434 2.1e-62 243.0 170 68.2
Peaxi162Scf01161g00328 Petunia axillaris HOM05D007406 ORTHO05D009434 4.3e-60 235.3 218 60.1
CARHR086780 Cardamine hirsuta HOM05D007406 ORTHO05D009434 1.8e-58 229.9 138 80.4
GSVIVG01009288001 Vitis vinifera HOM05D007406 ORTHO05D009434 4.1e-58 228.8 157 75.8
SEGI_23576 Sequoiadendron giganteum HOM05D007406 ORTHO05D009434 1.9e-55 219.9 226 54.4
Pp3c10_2700 Physcomitrium patens HOM05D007406 ORTHO05D009434 9.3e-55 217.6 219 52.5
CDE04G3630 Ceratophyllum demersum HOM05D007406 ORTHO05D009434 1.3e-51 207.2 140 69.3
AUR62039350 Chenopodium quinoa HOM05D007406 ORTHO05D009434 3.7e-51 205.7 154 72.1
A05p37120 Brassica napus HOM05D007406 ORTHO05D004372 8.5e-48 194.5 147 72.1
C05p55550 Brassica napus HOM05D007406 ORTHO05D004372 1.1e-47 194.1 147 71.4
Nitab4.5_0001494g0090 Nicotiana tabacum HOM05D007406 ORTHO05D009434 1.4e-45 187.2 219 51.6
Sc15g0005330 Simmondsia chinensis HOM05D007406 ORTHO05D009434 1.5e-44 183.7 147 63.9
Aa31sc118G30 Aethionema arabicum HOM05D007406 ORTHO05D009434 1.2e-30 137.5 95 75.8
Hma1.2p1_1926F.1_g307740 Hydrangea macrophylla HOM05D007406 ORTHO05D009434 4.1e-26 122.5 80 80.0
Hma1.2p1_2378F.1_g320925 Hydrangea macrophylla HOM05D007406 ORTHO05D009434 4.1e-26 122.5 80 80.0
MCO14G094 Micromonas commoda HOM05D007406 ORTHO05D009434 4.7e-22 109.0 214 36.0
Dinv39200 Davidia involucrata HOM05D007406 ORTHO05D009434 2.0e-20 103.6 71 73.2
Psat0s3650g0120 Pisum sativum HOM05D007406 ORTHO05D009434 2.8e-19 99.8 59 78.0
Sc15g0005340 Simmondsia chinensis HOM05D007406 ORTHO05D009434 1.9e-15 87.0 78 62.8
Os03g0728600 Oryza sativa ssp. japonica HOM05D007406 ORTHO05D009434 2.8e-14 83.2 73 49.3
PRCOL_00000641 Prasinoderma coloniale HOM05D007406 ORTHO05D009434 6.1e-14 82.0 186 34.9
Cre10.g466400 Chlamydomonas reinhardtii HOM05D007406 ORTHO05D009434 6.8e-13 78.6 157 36.9
Aa31LG6G10720 Aethionema arabicum HOM05D004815 ORTHO05D005742 4.3e-07 59.3 37 75.7


User provided reference genes

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