Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g32021 Fragaria vesca HOM05D000003 ORTHO05D000022 5.5e-92 340.9 165 100.0
FvH4_3g05300 Fragaria vesca HOM05D007074 ORTHO05D008542 3.0e-45 185.7 133 71.4
FvH4_6g34981 Fragaria vesca HOM05D000003 ORTHO05D000022 8.6e-45 184.1 141 69.5
RcHm_v2.0_Chr4g0404581 Rosa chinensis HOM05D000003 ORTHO05D000022 7.8e-30 134.4 151 44.4
FvH4_5g30341 Fragaria vesca HOM05D000003 ORTHO05D000022 2.5e-28 129.4 150 45.3
FvH4_2g21141 Fragaria vesca HOM05D000003 ORTHO05D000022 1.3e-24 117.1 152 40.8
FvH4_4g27942 Fragaria vesca HOM05D000003 ORTHO05D000022 2.9e-24 115.9 151 39.7
FvH4_6g16961 Fragaria vesca HOM05D000003 ORTHO05D000022 4.9e-24 115.2 151 39.7
FvH4_3g24611 Fragaria vesca HOM05D000003 ORTHO05D000004 1.9e-23 113.2 151 39.1
RcHm_v2.0_Chr4g0422501 Rosa chinensis HOM05D000003 ORTHO05D000022 3.2e-23 112.5 147 44.2
FvH4_5g15581 Fragaria vesca HOM05D000003 ORTHO05D000022 5.4e-23 111.7 153 37.9
RcHm_v2.0_Chr5g0021171 Rosa chinensis HOM05D003515 ORTHO05D004347 2.7e-22 109.4 153 43.1
FvH4_5g21911 Fragaria vesca HOM05D000003 ORTHO05D000022 7.9e-22 107.8 152 36.8
FvH4_5g35851 Fragaria vesca HOM05D000003 ORTHO05D000022 1.0e-21 107.5 152 38.2
FvH4_2g00771 Fragaria vesca HOM05D000003 ORTHO05D000022 3.9e-21 105.5 152 40.8
RcHm_v2.0_Chr4g0393821 Rosa chinensis HOM05D000003 ORTHO05D000022 1.1e-20 104.0 141 43.3
FvH4_6g19462 Fragaria vesca HOM05D000003 ORTHO05D000022 5.6e-20 101.7 147 39.5
FvH4_1g24851 Fragaria vesca HOM05D000003 ORTHO05D000022 7.4e-20 101.3 135 41.5
FvH4_3g14411 Fragaria vesca HOM05D000003 ORTHO05D000022 9.6e-20 100.9 136 38.2
FvH4_6g42141 Fragaria vesca HOM05D000003 ORTHO05D000022 1.3e-19 100.5 138 41.3
RcHm_v2.0_Chr1g0356971 Rosa chinensis HOM05D000003 ORTHO05D000022 2.1e-19 99.8 151 34.4
FvH4_6g20921 Fragaria vesca HOM05D000003 ORTHO05D000022 4.8e-19 98.6 127 43.3
FvH4_4g13392 Fragaria vesca HOM05D000003 ORTHO05D000022 1.8e-18 96.7 153 32.7
FvH4_4g17203 Fragaria vesca HOM05D000003 ORTHO05D000022 1.8e-18 96.7 137 37.2
FvH4_6g42230 Fragaria vesca HOM05D000003 ORTHO05D000022 4.0e-18 95.5 133 39.8
FvH4_3g05211 Fragaria vesca HOM05D000003 ORTHO05D000022 5.3e-18 95.1 153 35.9
Prupe.1G162400 Prunus persica HOM05D000003 ORTHO05D000022 5.3e-18 95.1 151 32.5
FvH4_5g23942 Fragaria vesca HOM05D002480 ORTHO05D003145 6.9e-18 94.7 126 42.9
FvH4_6g18361 Fragaria vesca HOM05D000003 ORTHO05D000022 2.0e-17 93.2 155 36.1
FAN14G5849 Fragaria x ananassa HOM05D000003 ORTHO05D000022 9.9e-17 90.9 81 59.3
Prupe.1G509200 Prunus persica HOM05D000003 ORTHO05D000022 1.7e-16 90.1 141 36.9
FAN27G2760 Fragaria x ananassa HOM05D000003 ORTHO05D000022 4.9e-16 88.6 138 39.1
Prupe.1G168800 Prunus persica HOM05D000003 ORTHO05D000022 8.4e-16 87.8 148 35.8
FAN10G3451 Fragaria x ananassa HOM05D000051 ORTHO05D000015 2.1e-14 83.2 124 36.3
Prupe.7G010700 Prunus persica HOM05D000003 ORTHO05D000022 6.0e-14 81.6 141 33.3
FAN05G3659 Fragaria x ananassa HOM05D000003 ORTHO05D000022 7.9e-14 81.3 55 74.5
FvH4_6g20891 Fragaria vesca HOM05D000003 ORTHO05D000022 1.0e-13 80.9 131 35.9
Prupe.8G128400 Prunus persica HOM05D018000 ORTHO05D017022 3.9e-13 79.0 139 34.5
Hund07702 Selenicereus undatus HOM05D001688 ORTHO05D001571 3.9e-13 79.0 151 32.5
Hund22573 Selenicereus undatus HOM05D000003 ORTHO05D000022 1.9e-12 76.6 149 34.2
Prupe.6G185900 Prunus persica HOM05D000003 ORTHO05D000022 2.5e-12 76.3 120 33.3
FvH4_2g17721 Fragaria vesca HOM05D000003 ORTHO05D000022 4.3e-12 75.5 120 33.3
FAN05G3462 Fragaria x ananassa HOM05D000003 ORTHO05D000022 5.6e-12 75.1 62 61.3
FvH4_5g19160 Fragaria vesca HOM05D000003 ORTHO05D025552 9.6e-12 74.3 135 36.3
FvH4_3g24081 Fragaria vesca HOM05D000003 ORTHO05D000022 1.3e-11 73.9 123 33.3
FAN03G0694 Fragaria x ananassa HOM05D000003 ORTHO05D000022 2.8e-11 72.8 151 36.4
RcHm_v2.0_Chr1g0374401 Rosa chinensis HOM05D000106 ORTHO05D010272 3.7e-11 72.4 136 28.7
FvH4_1g22511 Fragaria vesca HOM05D000003 ORTHO05D000022 4.8e-11 72.0 68 60.3
FvH4_2g33371 Fragaria vesca HOM05D000003 ORTHO05D000022 4.8e-11 72.0 115 33.9
FAN05G0269 Fragaria x ananassa HOM05D000003 ORTHO05D000022 4.8e-11 72.0 173 32.9
FAN02G2811 Fragaria x ananassa HOM05D000003 ORTHO05D000022 6.2e-11 71.6 109 41.3
FvH4_4g30261 Fragaria vesca HOM05D000003 ORTHO05D000006 8.1e-11 71.2 121 29.8
FvH4_5g15582 Fragaria vesca HOM05D000003 ORTHO05D000022 8.1e-11 71.2 141 34.0
FAN10G2981 Fragaria x ananassa HOM05D000003 ORTHO05D000022 1.1e-10 70.9 155 34.8
FvH4_6g18903 Fragaria vesca HOM05D000003 ORTHO05D000022 2.4e-10 69.7 237 25.7
RcHm_v2.0_Chr3g0495871 Rosa chinensis HOM05D000003 ORTHO05D000022 2.4e-10 69.7 74 48.6
FAN12G1404 Fragaria x ananassa HOM05D000003 ORTHO05D000022 3.1e-10 69.3 114 36.8
FvH4_5g27791 Fragaria vesca HOM05D000003 ORTHO05D000022 4.0e-10 68.9 64 46.9
FAN16G2078 Fragaria x ananassa HOM05D005119 ORTHO05D006338 4.0e-10 68.9 105 37.1
FvH4_5g30301 Fragaria vesca HOM05D000003 ORTHO05D000022 6.9e-10 68.2 135 34.1
RcHm_v2.0_Chr1g0334811 Rosa chinensis HOM05D000003 ORTHO05D000022 1.2e-09 67.4 95 38.9
FvH4_4g02991 Fragaria vesca HOM05D000003 ORTHO05D000022 4.5e-09 65.5 65 43.1
FvH4_4g03801 Fragaria vesca HOM05D000003 ORTHO05D000022 4.5e-09 65.5 98 45.9
FAN06G2752 Fragaria x ananassa HOM05D000003 ORTHO05D000022 5.8e-09 65.1 125 38.4
RcHm_v2.0_Chr7g0218671 Rosa chinensis HOM05D000003 ORTHO05D000022 5.8e-09 65.1 92 39.1
FvH4_2g19001 Fragaria vesca HOM05D000003 ORTHO05D000022 7.6e-09 64.7 113 34.5
FvH4_5g24522 Fragaria vesca HOM05D000003 ORTHO05D000022 1.0e-08 64.3 152 28.9
FvH4_1g28481 Fragaria vesca HOM05D000003 ORTHO05D011994 1.3e-08 63.9 73 41.1
QL02p082090 Quercus lobata HOM05D000003 ORTHO05D000167 1.3e-08 63.9 146 30.8
FvH4_2g07191 Fragaria vesca HOM05D000003 ORTHO05D000022 1.7e-08 63.5 52 55.8
FvH4_5g16792 Fragaria vesca HOM05D000003 ORTHO05D000022 1.7e-08 63.5 111 28.8
FAN05G4658 Fragaria x ananassa HOM05D000003 ORTHO05D000022 1.7e-08 63.5 51 64.7
FAN21G0011 Fragaria x ananassa HOM05D000003 ORTHO05D011994 1.7e-08 63.5 149 30.2
FvH4_6g27511 Fragaria vesca HOM05D015180 ORTHO05D016296 2.9e-08 62.8 87 35.6
PSO339G5198 Papaver somniferum HOM05D000155 ORTHO05D000022 2.9e-08 62.8 114 34.2
Hund03119 Selenicereus undatus HOM05D000003 ORTHO05D050926 2.9e-08 62.8 117 31.6
TWI38G0639 Tripterygium wilfordii HOM05D000003 ORTHO05D000167 2.9e-08 62.8 144 31.2
QL10p030412 Quercus lobata HOM05D000003 ORTHO05D000167 3.8e-08 62.4 153 31.4
Lj4g0025065 Lotus japonicus HOM05D000155 ORTHO05D000022 4.9e-08 62.0 157 29.9
FvH4_3g19950 Fragaria vesca HOM05D002732 ORTHO05D002955 6.5e-08 61.6 112 35.7
SEGI_02397 Sequoiadendron giganteum HOM05D007626 ORTHO05D009633 6.5e-08 61.6 134 30.6
RcHm_v2.0_Chr7g0181271 Rosa chinensis HOM05D000003 ORTHO05D000022 8.4e-08 61.2 151 30.5
Prupe.1G189700 Prunus persica HOM05D000003 ORTHO05D000022 1.1e-07 60.8 108 32.4
FvH4_2g12641 Fragaria vesca HOM05D000003 ORTHO05D000022 1.4e-07 60.5 92 38.0
FvH4_3g33091 Fragaria vesca HOM05D000003 ORTHO05D000022 1.4e-07 60.5 151 31.1
FAN11G1435 Fragaria x ananassa HOM05D000003 ORTHO05D011994 1.4e-07 60.5 148 26.4
Atru.chr3.3019 Acer truncatum HOM05D000003 ORTHO05D000022 1.9e-07 60.1 148 31.1
COL.COLO4_13164 Corchorus olitorius HOM05D009774 ORTHO05D000167 1.9e-07 60.1 144 30.6
Atru.chr3.2067 Acer truncatum HOM05D000003 ORTHO05D000022 2.5e-07 59.7 152 31.6
Atru.chr4.1844 Acer truncatum HOM05D000003 ORTHO05D000022 2.5e-07 59.7 144 32.6
CSS0009143 Camellia sinensis var. sinensis HOM05D000155 ORTHO05D000022 2.5e-07 59.7 128 32.8
FvH4_3g35341 Fragaria vesca HOM05D000003 ORTHO05D000022 3.2e-07 59.3 117 30.8
Aqoxy3G02768 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 4.2e-07 58.9 124 31.5
FAN01G0455 Fragaria x ananassa HOM05D025495 ORTHO05D000022 4.2e-07 58.9 128 33.6
FAN10G1142 Fragaria x ananassa HOM05D000003 ORTHO05D000022 4.2e-07 58.9 87 40.2
QL11p009033 Quercus lobata HOM05D000003 ORTHO05D000004 4.2e-07 58.9 154 27.9
Atru.chr2.2391 Acer truncatum HOM05D000003 ORTHO05D000167 5.5e-07 58.5 157 28.7
EL10As6g23665 Beta vulgaris HOM05D000003 ORTHO05D000167 5.5e-07 58.5 150 25.3
FAN15G1887 Fragaria x ananassa HOM05D002967 ORTHO05D003281 5.5e-07 58.5 70 48.6
FAN24G3500 Fragaria x ananassa HOM05D000219 ORTHO05D000226 5.5e-07 58.5 66 40.9
SEGI_15436 Sequoiadendron giganteum HOM05D001690 ORTHO05D013089 5.5e-07 58.5 125 32.8
Atru.chr12.2455 Acer truncatum HOM05D000003 ORTHO05D000022 7.1e-07 58.2 144 29.9
Aqoxy3G01961 Aquilegia oxysepala HOM05D009705 ORTHO05D000022 7.1e-07 58.2 126 30.2
Glyma.13G224100 Glycine max HOM05D000062 ORTHO05D000043 7.1e-07 58.2 159 32.1
QL11p056556 Quercus lobata HOM05D000003 ORTHO05D000167 7.1e-07 58.2 155 30.3
Atru.chr1.1302 Acer truncatum HOM05D000003 ORTHO05D000004 9.3e-07 57.8 151 32.5
Atru.chr2.1762 Acer truncatum HOM05D000003 ORTHO05D000022 9.3e-07 57.8 157 34.4
Prupe.6G308300 Prunus persica HOM05D000003 ORTHO05D000022 9.3e-07 57.8 66 40.9
TWI09G0364 Tripterygium wilfordii HOM05D000003 ORTHO05D000167 1.2e-06 57.4 148 30.4
FAN24G0533 Fragaria x ananassa HOM05D000003 ORTHO05D011994 1.6e-06 57.0 73 37.0
FAN25G2694 Fragaria x ananassa HOM05D011708 ORTHO05D011994 1.6e-06 57.0 75 41.3
Peaxi162Scf00223g00111 Petunia axillaris HOM05D000155 ORTHO05D000022 1.6e-06 57.0 153 28.8
Prupe.4G245300 Prunus persica HOM05D000155 ORTHO05D000022 1.6e-06 57.0 73 38.4
QL05p065428 Quercus lobata HOM05D000003 ORTHO05D000004 1.6e-06 57.0 150 27.3
Aqoxy6G02045 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 2.1e-06 56.6 153 22.9
Lj6g0004382 Lotus japonicus HOM05D000003 ORTHO05D000004 2.1e-06 56.6 145 29.0
Nitab4.5_0000455g0050 Nicotiana tabacum HOM05D000155 ORTHO05D000022 2.1e-06 56.6 155 30.3
Prupe.2G140300 Prunus persica HOM05D000003 ORTHO05D000022 2.1e-06 56.6 127 26.8
SHI43080 Sapria himalayana HOM05D004990 ORTHO05D000022 2.1e-06 56.6 126 34.1
SEGI_01428 Sequoiadendron giganteum HOM05D000155 ORTHO05D000022 2.1e-06 56.6 124 29.8
TPR.G36747 Trifolium pratense HOM05D000155 ORTHO05D000022 2.1e-06 56.6 153 26.1
Atru.chr1.956 Acer truncatum HOM05D000003 ORTHO05D000006 2.7e-06 56.2 142 33.8
Atru.chr10.81 Acer truncatum HOM05D000003 ORTHO05D000004 2.7e-06 56.2 156 32.7
Atru.chr11.1308 Acer truncatum HOM05D000003 ORTHO05D000022 2.7e-06 56.2 139 31.7
Cc03_g15170 Coffea canephora HOM05D000025 ORTHO05D000022 2.7e-06 56.2 141 29.8
PSO541G3800 Papaver somniferum HOM05D008740 ORTHO05D006738 2.7e-06 56.2 141 29.1
TAR630G0005 Trochodendron aralioides HOM05D009417 ORTHO05D011990 2.7e-06 56.2 127 29.9
QL01p018268 Quercus lobata HOM05D000155 ORTHO05D000022 3.5e-06 55.8 132 30.3
SHI31030 Sapria himalayana HOM05D004990 ORTHO05D000022 3.5e-06 55.8 107 33.6
PGSC0003DMG400037922 Solanum tuberosum HOM05D000155 ORTHO05D000022 3.5e-06 55.8 160 28.8
Atru.chr1.776 Acer truncatum HOM05D000003 ORTHO05D000004 4.6e-06 55.5 148 31.8
FvH4_1g23121 Fragaria vesca HOM05D000003 ORTHO05D000022 4.6e-06 55.5 64 39.1
FAN09G4019 Fragaria x ananassa HOM05D044665 ORTHO05D000022 4.6e-06 55.5 122 36.1
Nitab4.5_0000008g0280 Nicotiana tabacum HOM05D000155 ORTHO05D000022 4.6e-06 55.5 153 29.4
PSO832G1326 Papaver somniferum HOM05D001761 ORTHO05D000022 4.6e-06 55.5 157 28.0
Atru.chr2.284 Acer truncatum HOM05D000003 ORTHO05D000022 6.0e-06 55.1 167 31.7
Haze_01707 Corylus avellana HOM05D000650 ORTHO05D010020 6.0e-06 55.1 121 30.6
FvH4_2g15861 Fragaria vesca HOM05D000003 ORTHO05D000022 6.0e-06 55.1 151 31.1
FAN07G1156 Fragaria x ananassa HOM05D000003 ORTHO05D000022 6.0e-06 55.1 36 77.8
FAN21G0483 Fragaria x ananassa HOM05D000003 ORTHO05D000022 6.0e-06 55.1 119 32.8
FAN24G1351 Fragaria x ananassa HOM05D033094 ORTHO05D000022 6.0e-06 55.1 109 33.9
Lalb_Chr20g0122381 Lupinus albus HOM05D000155 ORTHO05D000022 6.0e-06 55.1 154 29.9
PSO210G6361 Papaver somniferum HOM05D000003 ORTHO05D000004 6.0e-06 55.1 117 29.1
Cc05_g02910 Coffea canephora HOM05D000003 ORTHO05D000004 7.9e-06 54.7 131 35.9
Haze_01803 Corylus avellana HOM05D000650 ORTHO05D010020 7.9e-06 54.7 121 30.6
Haze_10323 Corylus avellana HOM05D000650 ORTHO05D010020 7.9e-06 54.7 121 29.8
Nitab4.5_0000213g0180 Nicotiana tabacum HOM05D000155 ORTHO05D000022 7.9e-06 54.7 164 31.1
PSO170G6354 Papaver somniferum HOM05D003407 ORTHO05D001026 7.9e-06 54.7 161 24.8
PSO384G2089 Papaver somniferum HOM05D000155 ORTHO05D000022 7.9e-06 54.7 102 32.4
Prupe.1G202000 Prunus persica HOM05D000003 ORTHO05D000004 7.9e-06 54.7 128 33.6
SGA_v2.0_scaffold7G03916 Striga asiatica HOM05D000155 ORTHO05D000022 7.9e-06 54.7 153 26.1


User provided reference genes

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