Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g31130 Fragaria vesca HOM05D007388 ORTHO05D009421 2.9e-120 435.3 222 100.0
FAN24G3326 Fragaria x ananassa HOM05D007388 ORTHO05D009421 6.0e-118 427.6 222 98.6
FAN20G0472 Fragaria x ananassa HOM05D007388 ORTHO05D009421 1.3e-117 426.4 222 98.2
FAN27G0155 Fragaria x ananassa HOM05D007388 ORTHO05D009421 7.6e-113 410.6 241 88.8
RcHm_v2.0_Chr6g0311651 Rosa chinensis HOM05D007388 ORTHO05D009421 3.8e-104 381.7 221 89.6
MD15G1051600 Malus domestica HOM05D007388 ORTHO05D009421 1.0e-77 293.9 222 72.1
QL02p016663 Quercus lobata HOM05D007388 ORTHO05D009421 5.9e-65 251.5 220 63.2
Atru.chr7.1857 Acer truncatum HOM05D007388 ORTHO05D009421 3.8e-64 248.8 223 61.9
TWI63G1062 Tripterygium wilfordii HOM05D007388 ORTHO05D009421 5.0e-64 248.4 220 61.4
Cfa018015 Carpinus fangiana HOM05D007388 ORTHO05D009421 1.0e-61 240.7 222 58.6
COL.COLO4_21128 Corchorus olitorius HOM05D007388 ORTHO05D009421 3.0e-61 239.2 220 60.5
Duzib168G1804 Durio zibethinus HOM05D007388 ORTHO05D009421 3.0e-61 239.2 220 60.5
Eucgr.C03150 Eucalyptus grandis HOM05D007388 ORTHO05D009421 3.0e-61 239.2 222 57.2
Gohir.A05G039100 Gossypium hirsutum HOM05D007388 ORTHO05D009421 3.0e-61 239.2 220 59.5
Gohir.D05G040600 Gossypium hirsutum HOM05D007388 ORTHO05D009421 1.2e-60 237.3 220 59.5
CsaV3_4G036020 Cucumis sativus L. HOM05D007388 ORTHO05D009421 1.5e-60 236.9 219 61.2
MELO3C016910.2 Cucumis melo HOM05D007388 ORTHO05D009421 2.0e-60 236.5 219 61.2
Lalb_Chr11g0063321 Lupinus albus HOM05D007388 ORTHO05D009421 2.6e-60 236.1 218 59.6
Prupe.1G405600 Prunus persica HOM05D007388 ORTHO05D009421 3.4e-60 235.7 189 69.3
Ciclev10009451m.g Citrus clementina HOM05D007388 ORTHO05D009421 1.4e-58 230.3 220 59.1
PGR044G0912 Punica granatum HOM05D007388 ORTHO05D009421 5.4e-58 228.4 191 63.4
Manes.16G084900 Manihot esculenta HOM05D007388 ORTHO05D009421 9.2e-58 227.6 220 56.8
Potri.006G221900 Populus trichocarpa HOM05D007388 ORTHO05D009421 9.2e-58 227.6 220 56.8
Nn8g38703 Nelumbo nucifera HOM05D007388 ORTHO05D009421 2.7e-57 226.1 223 57.8
CiPaw.16G070200 Carya illinoinensis HOM05D007388 ORTHO05D009421 4.5e-57 225.3 221 56.6
Medtr3g104980 Medicago truncatula HOM05D007388 ORTHO05D009421 1.1e-55 220.7 219 58.4
Glyma.04G055400 Glycine max HOM05D007388 ORTHO05D009421 3.3e-55 219.2 225 58.2
GSVIVG01035454001 Vitis vinifera HOM05D007388 ORTHO05D009421 3.3e-55 219.2 221 57.5
Sed0027665 Sechium edule HOM05D007388 ORTHO05D009421 4.3e-55 218.8 193 61.7
Glyma.06G055600 Glycine max HOM05D007388 ORTHO05D009421 9.5e-55 217.6 221 56.1
Lj1g0010451 Lotus japonicus HOM05D007388 ORTHO05D009421 9.5e-55 217.6 222 57.2
TAR383G1008 Trochodendron aralioides HOM05D007388 ORTHO05D009421 9.5e-55 217.6 221 54.8
Sabra06G0171500 Salix brachista HOM05D007388 ORTHO05D009421 2.8e-54 216.1 217 53.5
ClCG05G015710 Citrullus lanatus HOM05D007388 ORTHO05D009421 4.7e-54 215.3 231 55.4
Actinidia25694 Actinidia chinensis HOM05D007388 ORTHO05D009421 4.0e-53 212.2 168 63.1
CSS0004113 Camellia sinensis var. sinensis HOM05D007388 ORTHO05D009421 4.0e-53 212.2 194 56.7
ECA240G1505 Erigeron canadensis HOM05D007388 ORTHO05D009421 5.2e-53 211.8 229 53.3
AUR62009088 Chenopodium quinoa HOM05D007388 ORTHO05D009421 6.8e-53 211.5 196 57.1
Nitab4.5_0001705g0020 Nicotiana tabacum HOM05D007388 ORTHO05D009421 1.2e-52 210.7 178 60.1
Dinv41838 Davidia involucrata HOM05D007388 ORTHO05D009421 1.5e-52 210.3 182 59.9
Phvul.009G081500 Phaseolus vulgaris HOM05D007388 ORTHO05D009421 1.5e-52 210.3 219 53.4
Psat5g102720 Pisum sativum HOM05D007388 ORTHO05D009421 1.5e-52 210.3 219 55.7
AUR62020582 Chenopodium quinoa HOM05D007388 ORTHO05D009421 2.0e-52 209.9 242 49.2
Thecc.09G062100 Theobroma cacao HOM05D007388 ORTHO05D009421 2.0e-52 209.9 220 55.9
TPR.G3529 Trifolium pratense HOM05D007388 ORTHO05D009421 3.4e-52 209.1 218 53.2
VMungo1309G3057 Vigna mungo HOM05D007388 ORTHO05D009421 3.7e-51 205.7 221 54.8
HanXRQChr04g0097861 Helianthus annuus HOM05D007388 ORTHO05D009421 1.4e-50 203.8 197 56.9
MSTRG.25983 Avicennia marina HOM05D007388 ORTHO05D009421 1.2e-49 200.7 221 52.5
Migut.A00083 Erythranthe guttata HOM05D007388 ORTHO05D009421 2.7e-49 199.5 223 49.8
Gorai.009G041100 Gossypium raimondii HOM05D007388 ORTHO05D009421 3.5e-49 199.1 187 57.2
BcaC04g19512 Brassica carinata HOM05D007388 ORTHO05D009421 5.9e-49 198.4 172 57.0
A10p18840 Brassica napus HOM05D007388 ORTHO05D009421 5.9e-49 198.4 172 57.0
C09p54850 Brassica napus HOM05D007388 ORTHO05D009421 5.9e-49 198.4 172 57.0
BolC9t58346H Brassica oleracea HOM05D007388 ORTHO05D009421 5.9e-49 198.4 172 57.0
CANSAT25G2576 Cannabis sativa HOM05D007388 ORTHO05D009421 7.8e-49 198.0 154 65.6
ATR0598G070 Amborella trichopoda HOM05D007388 ORTHO05D009421 1.3e-48 197.2 188 54.8
Peaxi162Scf00596g00105 Petunia axillaris HOM05D007388 ORTHO05D009421 1.3e-48 197.2 223 49.3
BraA10t43964Z Brassica rapa HOM05D007388 ORTHO05D009421 2.3e-48 196.4 172 57.0
BcaB08g36472 Brassica carinata HOM05D007388 ORTHO05D009421 5.0e-48 195.3 196 52.0
AL6G32850 Arabidopsis lyrata HOM05D007388 ORTHO05D009421 1.5e-47 193.7 180 52.8
THA.LOC104799581 Tarenaya hassleriana HOM05D007388 ORTHO05D009421 1.5e-47 193.7 158 58.9
CARHR191660 Cardamine hirsuta HOM05D007388 ORTHO05D009421 1.9e-47 193.4 178 55.6
CAN.G246.5 Capsicum annuum HOM05D007388 ORTHO05D009421 3.3e-47 192.6 218 50.5
arahy.Tifrunner.gnm1.ann1.P6UV73 Arachis hypogaea HOM05D007388 ORTHO05D009421 4.3e-47 192.2 226 51.3
AT5G21430 Arabidopsis thaliana HOM05D007388 ORTHO05D009421 1.2e-46 190.7 180 52.2
Solyc06g082970.3 Solanum lycopersicum HOM05D007388 ORTHO05D009421 2.1e-46 189.9 219 51.1
Sopen06g034360 Solanum pennellii HOM05D007388 ORTHO05D009421 2.1e-46 189.9 219 51.1
Thhalv10014636m.g Eutrema salsugineum HOM05D007388 ORTHO05D009421 2.8e-46 189.5 180 52.2
Carub.0006s1952 Capsella rubella HOM05D007388 ORTHO05D009421 3.6e-46 189.1 182 52.2
Atru.BG.20.p Acer truncatum HOM05D007388 ORTHO05D009421 8.0e-46 188.0 128 70.3
DCAR_003716 Daucus carota HOM05D007388 ORTHO05D009421 1.0e-45 187.6 187 52.4
arahy.Tifrunner.gnm1.ann1.044LWD Arachis hypogaea HOM05D000560 ORTHO05D000417 2.3e-45 186.4 227 51.5
Aa31LG1G13520 Aethionema arabicum HOM05D007388 ORTHO05D009421 3.1e-45 186.0 203 50.2
PGSC0003DMG400027673 Solanum tuberosum HOM05D007388 ORTHO05D009421 3.1e-45 186.0 216 51.4
Lsat_1_v5_gn_7_58400 Lactuca sativa HOM05D007388 ORTHO05D009421 4.0e-45 185.7 188 54.3
Sp6g23310 Schrenkiella parvula HOM05D007388 ORTHO05D009421 6.8e-45 184.9 217 44.7
Rhsim10G0152000 Rhododendron simsii HOM05D007388 ORTHO05D009421 8.9e-45 184.5 230 46.5
PSO421G0687 Papaver somniferum HOM05D007388 ORTHO05D009421 3.4e-44 182.6 158 58.9
MBI19_g11844_MAGBIO Magnolia biondii HOM05D007388 ORTHO05D009421 7.5e-44 181.4 222 48.6
Cc08_g01260 Coffea canephora HOM05D007388 ORTHO05D009421 1.7e-43 180.3 151 62.3
CDE06G1148 Ceratophyllum demersum HOM05D007388 ORTHO05D009421 8.3e-43 177.9 197 50.3
Oeu000765.1 Olea europaea HOM05D007388 ORTHO05D009421 4.1e-42 175.6 259 39.8
Os12g0498500 Oryza sativa ssp. japonica HOM05D007388 ORTHO05D009421 3.0e-40 169.5 145 55.9
Ca_15836_v3 Cicer arietinum L. HOM05D007388 ORTHO05D009421 8.6e-40 167.9 150 60.7
Zm00001eb409580 Zea mays HOM05D007388 ORTHO05D009421 1.1e-39 167.5 145 57.2
Lj7C227T7 Lonicera japonica HOM05D007388 ORTHO05D009421 3.6e-38 162.5 233 43.8
EL10Ac2g03792 Beta vulgaris HOM05D007388 ORTHO05D009421 8.1e-38 161.4 128 62.5
Nitab4.5_0000268g0090 Nicotiana tabacum HOM05D007388 ORTHO05D009421 1.4e-37 160.6 227 44.1
Aqoxy7G01075 Aquilegia oxysepala HOM05D007388 ORTHO05D009421 2.3e-37 159.8 196 49.5
FAN15G1408 Fragaria x ananassa HOM05D007388 ORTHO05D009421 4.0e-37 159.1 93 92.5
CDE07G0202 Ceratophyllum demersum HOM05D007388 ORTHO05D001048 6.8e-37 158.3 157 52.9
vmacro12914 Vaccinium macrocarpon HOM05D007388 ORTHO05D009421 2.2e-35 153.3 236 42.8
Lj7C225T7 Lonicera japonica HOM05D007388 ORTHO05D009421 8.3e-35 151.4 233 42.5
Hma1.2p1_0231F.1_g097390 Hydrangea macrophylla HOM05D007388 ORTHO05D009421 9.6e-23 111.3 102 60.8
AagrBONN_evm.TU.Sc2ySwM_368.3296 Anthoceros agrestis HOM05D007388 ORTHO05D009421 5.2e-21 105.5 173 38.2
unitig_4.g30329 Utricularia gibba HOM05D007388 ORTHO05D009421 7.6e-20 101.7 148 42.6
Pp3c4_14700 Physcomitrium patens HOM05D007388 ORTHO05D009421 1.3e-19 100.9 187 35.3
Pp3c12_9640 Physcomitrium patens HOM05D007388 ORTHO05D009421 1.4e-18 97.4 196 33.2
Mapoly0129s0003 Marchantia polymorpha HOM05D007388 ORTHO05D009421 2.6e-12 76.6 179 29.1
Haze_18114 Corylus avellana HOM05D007388 ORTHO05D009421 6.4e-11 72.0 90 54.4
BNapus_Darmor_BZH_scaffold_38p01020 Brassica napus HOM05D007388 ORTHO05D009421 3.3e-07 59.7 67 41.8
SMO223G0044 Selaginella moellendorffii HOM05D007480 ORTHO05D009460 7.4e-07 58.5 101 33.7
QL07p047550 Quercus lobata HOM05D007388 ORTHO05D009421 1.3e-06 57.8 90 46.7
QL11p041786 Quercus lobata HOM05D007388 ORTHO05D009421 1.3e-06 57.8 90 46.7
QL11p041555 Quercus lobata HOM05D007388 ORTHO05D009421 4.8e-06 55.8 90 45.6


User provided reference genes

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