Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g30980 Fragaria vesca HOM05D007323 ORTHO05D009238 2.9e-123 445.3 234 100.0
FAN24G0989 Fragaria x ananassa HOM05D007323 ORTHO05D009238 7.3e-122 440.7 234 99.1
FAN20G2477 Fragaria x ananassa HOM05D007323 ORTHO05D009238 5.2e-120 434.5 234 97.4
FAN27G1709 Fragaria x ananassa HOM05D007323 ORTHO05D009238 4.4e-119 431.4 234 97.0
RcHm_v2.0_Chr6g0311811 Rosa chinensis HOM05D007323 ORTHO05D009238 3.4e-111 405.2 234 91.5
MD15G1049800 Malus domestica HOM05D007323 ORTHO05D009238 9.5e-98 360.5 242 80.6
Prupe.1G404100 Prunus persica HOM05D007323 ORTHO05D009238 2.2e-94 349.4 243 80.2
Cfa017873 Carpinus fangiana HOM05D007323 ORTHO05D009238 1.5e-79 300.1 239 70.3
Ciclev10009314m.g Citrus clementina HOM05D007323 ORTHO05D009238 1.2e-76 290.4 245 64.1
TWI34G0887 Tripterygium wilfordii HOM05D007323 ORTHO05D009238 6.0e-76 288.1 243 65.8
Lj1g0021270 Lotus japonicus HOM05D007323 ORTHO05D009238 1.3e-75 287.0 235 67.7
VMungo1309G0522 Vigna mungo HOM05D007323 ORTHO05D009238 3.0e-75 285.8 236 68.2
Thecc.09G063400 Theobroma cacao HOM05D007323 ORTHO05D009238 6.7e-75 284.6 243 64.2
QL02p017014 Quercus lobata HOM05D007323 ORTHO05D009238 8.7e-75 284.3 249 65.1
Glyma.06G055900 Glycine max HOM05D007323 ORTHO05D009238 2.5e-74 282.7 236 66.9
Phvul.009G082000 Phaseolus vulgaris HOM05D007323 ORTHO05D009238 2.5e-74 282.7 237 67.5
Lalb_Chr08g0244811 Lupinus albus HOM05D007323 ORTHO05D009238 6.2e-73 278.1 236 66.1
CiPaw.16G068300 Carya illinoinensis HOM05D007323 ORTHO05D009238 1.4e-72 276.9 237 65.4
Haze_18294 Corylus avellana HOM05D007323 ORTHO05D009238 2.4e-72 276.2 289 58.1
Ca_15835_v3 Cicer arietinum L. HOM05D007323 ORTHO05D009238 9.0e-72 274.2 237 65.4
Duzib150G1239 Durio zibethinus HOM05D007323 ORTHO05D009238 2.0e-71 273.1 243 63.8
COL.COLO4_21139 Corchorus olitorius HOM05D007323 ORTHO05D009238 1.3e-70 270.4 244 60.2
Manes.16G085700 Manihot esculenta HOM05D007323 ORTHO05D009238 1.7e-70 270.0 242 65.3
PGR031G0894 Punica granatum HOM05D007323 ORTHO05D009238 4.6e-68 261.9 230 62.6
Gorai.001G020100 Gossypium raimondii HOM05D007323 ORTHO05D009238 6.0e-68 261.5 235 65.1
CANSAT25G3877 Cannabis sativa HOM05D007323 ORTHO05D009238 1.0e-67 260.8 235 63.8
Nn8g38659 Nelumbo nucifera HOM05D007323 ORTHO05D009238 1.0e-67 260.8 218 64.7
TPR.G3557 Trifolium pratense HOM05D007323 ORTHO05D009238 1.8e-67 260.0 236 62.3
Sed0017686 Sechium edule HOM05D007323 ORTHO05D009238 2.3e-67 259.6 245 61.2
arahy.Tifrunner.gnm1.ann1.7DEW7H Arachis hypogaea HOM05D007323 ORTHO05D009238 6.7e-67 258.1 243 63.0
HanXRQChr10g0309971 Helianthus annuus HOM05D007323 ORTHO05D009238 8.7e-67 257.7 239 59.8
Dinv41843 Davidia involucrata HOM05D007323 ORTHO05D009238 1.5e-66 256.9 235 62.6
Medtr3g105050 Medicago truncatula HOM05D007323 ORTHO05D009238 1.5e-66 256.9 234 62.0
Gohir.D07G019400 Gossypium hirsutum HOM05D007323 ORTHO05D009238 5.6e-66 255.0 234 64.5
Sabra06G0170600 Salix brachista HOM05D007323 ORTHO05D009238 5.6e-66 255.0 248 59.3
MELO3C011483.2 Cucumis melo HOM05D007323 ORTHO05D009238 9.6e-66 254.2 206 67.5
Eucgr.B01965 Eucalyptus grandis HOM05D007323 ORTHO05D009238 9.6e-66 254.2 197 68.0
Potri.006G220800 Populus trichocarpa HOM05D007323 ORTHO05D009238 9.6e-66 254.2 247 59.5
ECA234G0604 Erigeron canadensis HOM05D007323 ORTHO05D009238 2.1e-65 253.1 241 59.3
ClCG08G009880 Citrullus lanatus HOM05D007323 ORTHO05D009238 1.4e-64 250.4 245 59.6
EL10Ac2g03780 Beta vulgaris HOM05D007323 ORTHO05D009238 1.8e-64 250.0 239 60.7
Nitab4.5_0000446g0180 Nicotiana tabacum HOM05D007323 ORTHO05D009238 2.4e-64 249.6 242 58.3
Nitab4.5_0002831g0040 Nicotiana tabacum HOM05D007323 ORTHO05D009238 4.0e-64 248.8 242 58.3
Gohir.A07G019600 Gossypium hirsutum HOM05D007323 ORTHO05D009238 9.0e-64 247.7 208 67.3
Lsat_1_v5_gn_5_79461 Lactuca sativa HOM05D007323 ORTHO05D009238 9.0e-64 247.7 242 57.0
Actinidia03545 Actinidia chinensis HOM05D007323 ORTHO05D009238 1.2e-63 247.3 234 61.1
THA.LOC104819519 Tarenaya hassleriana HOM05D007323 ORTHO05D009238 1.5e-63 246.9 211 62.6
CsaV3_6G031970 Cucumis sativus L. HOM05D007323 ORTHO05D009238 3.4e-63 245.7 245 58.0
Cc08_g01150 Coffea canephora HOM05D007323 ORTHO05D009238 4.5e-63 245.4 241 58.9
GSVIVG01035470001 Vitis vinifera HOM05D007323 ORTHO05D009238 1.3e-62 243.8 183 69.9
Rhsim10G0107900 Rhododendron simsii HOM05D007323 ORTHO05D009238 2.2e-62 243.0 175 75.4
arahy.Tifrunner.gnm1.ann1.287SRD Arachis hypogaea HOM05D007323 ORTHO05D009238 6.5e-62 241.5 250 59.6
Sopen08g017220 Solanum pennellii HOM05D007323 ORTHO05D009238 8.4e-62 241.1 242 56.6
Thhalv10002091m.g Eutrema salsugineum HOM05D007323 ORTHO05D009238 1.4e-61 240.4 221 61.1
Hund03297 Selenicereus undatus HOM05D007323 ORTHO05D009238 1.4e-61 240.4 235 58.3
MSTRG.25986 Avicennia marina HOM05D007323 ORTHO05D009238 7.1e-61 238.0 240 57.9
BcaC07g40825 Brassica carinata HOM05D007323 ORTHO05D009238 1.2e-60 237.3 237 58.2
C08p38170 Brassica napus HOM05D007323 ORTHO05D009238 1.2e-60 237.3 237 58.2
BolC8t51392H Brassica oleracea HOM05D007323 ORTHO05D009238 1.2e-60 237.3 237 58.2
BraA09t40931Z Brassica rapa HOM05D007323 ORTHO05D009238 2.7e-60 236.1 237 57.4
Aqoxy7G01049 Aquilegia oxysepala HOM05D007323 ORTHO05D009238 6.0e-60 235.0 210 63.8
Sc06g0001110 Simmondsia chinensis HOM05D007323 ORTHO05D009238 1.0e-59 234.2 231 59.3
Atru.chr7.1847 Acer truncatum HOM05D007323 ORTHO05D009238 1.3e-59 233.8 172 71.5
A09p55240 Brassica napus HOM05D007323 ORTHO05D009238 1.8e-59 233.4 239 57.3
Carub.0004s0625 Capsella rubella HOM05D007323 ORTHO05D009238 2.3e-59 233.0 235 58.3
Sp4g06990 Schrenkiella parvula HOM05D007323 ORTHO05D009238 3.0e-59 232.6 234 56.4
AL4G18960 Arabidopsis lyrata HOM05D007323 ORTHO05D009238 1.1e-58 230.7 212 60.4
DCAR_007767 Daucus carota HOM05D007323 ORTHO05D009238 1.9e-58 229.9 219 62.6
SGA_v2.0_scaffold20G09163 Striga asiatica HOM05D007323 ORTHO05D009238 3.3e-58 229.2 206 60.7
Aa31LG2G12250 Aethionema arabicum HOM05D007323 ORTHO05D009238 7.4e-58 228.0 236 56.8
BcaB08g35255 Brassica carinata HOM05D007323 ORTHO05D009238 2.8e-57 226.1 235 56.6
vmacro05236 Vaccinium macrocarpon HOM05D007323 ORTHO05D009238 3.1e-56 222.6 173 69.4
Migut.A00078 Erythranthe guttata HOM05D007323 ORTHO05D009238 4.1e-56 222.2 243 57.6
PSO421G0353 Papaver somniferum HOM05D007323 ORTHO05D009238 4.1e-56 222.2 238 52.1
Psat5g030560 Pisum sativum HOM05D007323 ORTHO05D009238 5.3e-56 221.9 192 64.6
AT2G26340 Arabidopsis thaliana HOM05D007323 ORTHO05D009238 9.0e-56 221.1 239 56.1
PSO063G6894 Papaver somniferum HOM05D007323 ORTHO05D009238 7.6e-55 218.0 238 51.7
HPP92_024332 Vanilla planifolia HOM05D007323 ORTHO05D009238 6.5e-54 214.9 229 55.5
CDE05G0862 Ceratophyllum demersum HOM05D007323 ORTHO05D009238 1.1e-53 214.2 224 55.4
unitig_8.g4975 Utricularia gibba HOM05D007323 ORTHO05D009238 1.4e-53 213.8 206 56.3
ATR0598G133 Amborella trichopoda HOM05D007323 ORTHO05D009238 7.9e-52 208.0 177 64.4
SEGI_00918 Sequoiadendron giganteum HOM05D007323 ORTHO05D009238 6.7e-51 204.9 235 48.9
Os03g0176700 Oryza sativa ssp. japonica HOM05D007323 ORTHO05D009238 1.1e-50 204.1 192 60.4
CARHR118450 Cardamine hirsuta HOM05D007323 ORTHO05D009238 1.9e-50 203.4 177 64.4
A09p54710 Brassica napus HOM05D007323 ORTHO05D009238 2.4e-48 196.4 164 64.6
AUR62009079 Chenopodium quinoa HOM05D007323 ORTHO05D009238 4.1e-48 195.7 162 67.9
Zm00001eb005760 Zea mays HOM05D007323 ORTHO05D009238 4.1e-48 195.7 188 59.0
AUR62020587 Chenopodium quinoa HOM05D007323 ORTHO05D009238 8.5e-46 188.0 234 51.3
AagrBONN_evm.TU.Sc2ySwM_228.4439 Anthoceros agrestis HOM05D007323 ORTHO05D009238 1.1e-42 177.6 163 57.7
Pp3c4_13280 Physcomitrium patens HOM05D007323 ORTHO05D009238 2.6e-42 176.4 195 49.2
Eucgr.B01870 Eucalyptus grandis HOM05D007323 ORTHO05D009238 8.2e-41 171.4 135 65.9
Peaxi162Scf00486g01025 Petunia axillaris HOM05D007323 ORTHO05D009238 1.8e-40 170.2 239 46.9
TAR636G1368 Trochodendron aralioides HOM05D007323 ORTHO05D009238 1.8e-40 170.2 168 60.1
SMO239G0030 Selaginella moellendorffii HOM05D007323 ORTHO05D009238 2.5e-37 159.8 198 45.5
Mapoly0001s0019 Marchantia polymorpha HOM05D007323 ORTHO05D009238 4.7e-36 155.6 149 53.0
MBI13_g42814_MAGBIO Magnolia biondii HOM05D007323 ORTHO05D009238 2.2e-30 136.7 358 34.1
Cpa.g.sc126.24 Carica papaya HOM05D007323 ORTHO05D009238 4.7e-28 129.0 104 64.4
CSS0001075 Camellia sinensis var. sinensis HOM05D007323 ORTHO05D009238 8.8e-27 124.8 104 64.4
CSS0018719 Camellia sinensis var. sinensis HOM05D007323 ORTHO05D009238 8.8e-27 124.8 104 64.4
CBR_g19268 Chara braunii HOM05D007323 ORTHO05D009238 2.0e-26 123.6 159 40.3
MD08G1071400 Malus domestica HOM05D007323 ORTHO05D009238 1.7e-22 110.5 62 93.5
Cre16.g684150 Chlamydomonas reinhardtii HOM05D007323 ORTHO05D009238 5.4e-16 89.0 172 34.9
Solyc08g061800.3 Solanum lycopersicum HOM05D007323 ORTHO05D009238 1.8e-11 73.9 105 41.9
Glyma.04G055801 Glycine max HOM05D007323 ORTHO05D009238 4.4e-10 69.3 144 37.5
Os03g0176800 Oryza sativa ssp. japonica HOM05D009542 ORTHO05D294036 1.3e-09 67.8 140 33.6
TAR624G1004 Trochodendron aralioides HOM05D000386 ORTHO05D414906 2.7e-07 60.1 72 52.8


User provided reference genes

Program Settings