Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g30421 Fragaria vesca HOM05D004019 ORTHO05D035788 4.1e-133 478.4 304 100.0
FAN20G0521 Fragaria x ananassa HOM05D004019 ORTHO05D005136 4.8e-33 146.0 74 97.3
FAN24G2881 Fragaria x ananassa HOM05D004019 ORTHO05D005136 4.8e-33 146.0 74 97.3
FvH4_2g30330 Fragaria vesca HOM05D004019 ORTHO05D005136 1.8e-32 144.1 74 94.6
RcHm_v2.0_Chr6g0312581 Rosa chinensis HOM05D004019 ORTHO05D005136 5.9e-31 139.0 74 90.5
FvH4_6g48640 Fragaria vesca HOM05D000532 ORTHO05D002414 2.7e-28 130.2 88 76.1
FAN02G4048 Fragaria x ananassa HOM05D000532 ORTHO05D002414 2.7e-28 130.2 88 76.1
FAN14G5929 Fragaria x ananassa HOM05D000532 ORTHO05D002414 2.7e-28 130.2 88 76.1
FAN05G4745 Fragaria x ananassa HOM05D000532 ORTHO05D002414 1.0e-27 128.3 88 75.0
FAN09G1908 Fragaria x ananassa HOM05D000532 ORTHO05D002414 3.9e-27 126.3 88 73.9
RcHm_v2.0_Chr2g0168591 Rosa chinensis HOM05D000532 ORTHO05D002414 3.1e-24 116.7 88 69.3
Prupe.1G464500 Prunus persica HOM05D004019 ORTHO05D005136 1.2e-23 114.8 80 73.8
MD15G1113500 Malus domestica HOM05D004019 ORTHO05D005136 3.4e-23 113.2 80 71.2
Dinv30236 Davidia involucrata HOM05D004019 ORTHO05D005136 1.0e-19 101.7 93 55.9
Dinv14207 Davidia involucrata HOM05D004019 ORTHO05D005136 1.7e-17 94.4 76 60.5
CSS0034867 Camellia sinensis var. sinensis HOM05D004019 ORTHO05D005136 3.1e-16 90.1 76 59.2
Atru.chr7.2305 Acer truncatum HOM05D004019 ORTHO05D005136 4.1e-16 89.7 77 59.7
Gorai.009G053000 Gossypium raimondii HOM05D004019 ORTHO05D005136 5.3e-16 89.4 79 62.0
QL12p030952 Quercus lobata HOM05D004019 ORTHO05D005136 5.3e-16 89.4 76 63.2
Nitab4.5_0002393g0030 Nicotiana tabacum HOM05D004019 ORTHO05D005136 9.1e-16 88.6 76 56.6
Thecc.09G037700 Theobroma cacao HOM05D004019 ORTHO05D005136 9.1e-16 88.6 95 53.7
Actinidia13300 Actinidia chinensis HOM05D004019 ORTHO05D005136 1.2e-15 88.2 78 59.0
Cpa.g.sc205.16 Carica papaya HOM05D004019 ORTHO05D005136 1.2e-15 88.2 81 56.8
Gohir.A05G049400 Gossypium hirsutum HOM05D004019 ORTHO05D005136 1.2e-15 88.2 79 62.0
Rhsim02G0185100 Rhododendron simsii HOM05D004019 ORTHO05D005136 1.6e-15 87.8 86 55.8
vmacro11102 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 1.6e-15 87.8 69 58.0
CiPaw.07G216600 Carya illinoinensis HOM05D004019 ORTHO05D005136 4.5e-15 86.3 84 56.0
MD09G1050700 Malus domestica HOM05D000532 ORTHO05D002414 5.9e-15 85.9 86 57.0
CANSAT56G4370 Cannabis sativa HOM05D004019 ORTHO05D005136 1.3e-14 84.7 82 53.7
Migut.A00257 Erythranthe guttata HOM05D004019 ORTHO05D005136 2.2e-14 84.0 76 55.3
TWI63G0705 Tripterygium wilfordii HOM05D004019 ORTHO05D005136 2.9e-14 83.6 81 53.1
COL.COLO4_18737 Corchorus olitorius HOM05D004019 ORTHO05D005136 3.8e-14 83.2 71 62.0
Peaxi162Scf00105g00812 Petunia axillaris HOM05D004019 ORTHO05D005136 3.8e-14 83.2 76 53.9
Nitab4.5_0000250g0110 Nicotiana tabacum HOM05D004019 ORTHO05D005136 5.0e-14 82.8 76 52.6
Ciclev10007225m.g Citrus clementina HOM05D004019 ORTHO05D005136 6.5e-14 82.4 82 51.2
Cc08_g08730 Coffea canephora HOM05D000021 ORTHO05D000010 6.5e-14 82.4 71 53.5
Haze_21656 Corylus avellana HOM05D004019 ORTHO05D005136 6.5e-14 82.4 87 52.9
CANSAT25G1365 Cannabis sativa HOM05D004019 ORTHO05D005136 8.5e-14 82.0 80 55.0
Eucgr.C01572 Eucalyptus grandis HOM05D004019 ORTHO05D005136 8.5e-14 82.0 83 48.2
Cc08_g08140 Coffea canephora HOM05D004019 ORTHO05D005136 1.5e-13 81.3 72 51.4
Aqoxy7G01749 Aquilegia oxysepala HOM05D004019 ORTHO05D005136 1.9e-13 80.9 76 48.7
MD17G1050800 Malus domestica HOM05D000532 ORTHO05D002414 1.9e-13 80.9 86 54.7
HanXRQChr17g0539391 Helianthus annuus HOM05D004019 ORTHO05D005136 3.2e-13 80.1 74 52.7
Lj1g0020850 Lotus japonicus HOM05D004019 ORTHO05D005136 3.2e-13 80.1 94 46.8
Sabra06G0191800 Salix brachista HOM05D004019 ORTHO05D005136 4.2e-13 79.7 75 57.3
Sopen08g021930 Solanum pennellii HOM05D004019 ORTHO05D005136 1.2e-12 78.2 76 52.6
Lsat_1_v5_gn_3_27801 Lactuca sativa HOM05D004019 ORTHO05D005136 2.1e-12 77.4 81 51.9
Cc00_g31360 Coffea canephora HOM05D004019 ORTHO05D005136 2.7e-12 77.0 69 49.3
Glyma.06G074700 Glycine max HOM05D004019 ORTHO05D005136 2.7e-12 77.0 77 51.9
Sc09g0008920 Simmondsia chinensis HOM05D004019 ORTHO05D005136 4.7e-12 76.3 73 56.2
Solyc08g068040.3 Solanum lycopersicum HOM05D004019 ORTHO05D005136 6.1e-12 75.9 76 51.3
PGR031G1071 Punica granatum HOM05D004019 ORTHO05D005136 8.0e-12 75.5 82 46.3
arahy.Tifrunner.gnm1.ann1.WYF2AC Arachis hypogaea HOM05D004019 ORTHO05D005136 1.0e-11 75.1 88 44.3
Nn8g39221 Nelumbo nucifera HOM05D004019 ORTHO05D005136 1.0e-11 75.1 77 49.4
Potri.006G244900 Populus trichocarpa HOM05D004019 ORTHO05D005136 1.4e-11 74.7 75 54.7
DCAR_006254 Daucus carota HOM05D004019 ORTHO05D005136 1.8e-11 74.3 52 63.5
TAR624G1332 Trochodendron aralioides HOM05D004019 ORTHO05D005136 1.8e-11 74.3 77 49.4
Lalb_Chr11g0064021 Lupinus albus HOM05D004019 ORTHO05D005136 2.3e-11 73.9 86 47.7
Aa31LG5G9950 Aethionema arabicum HOM05D004019 ORTHO05D005136 3.0e-11 73.6 88 46.6
FAN10G1516 Fragaria x ananassa HOM05D025131 ORTHO05D035788 5.2e-11 72.8 33 100.0
Psat5g025600 Pisum sativum HOM05D004019 ORTHO05D005136 5.2e-11 72.8 96 38.5
Prupe.3G268100 Prunus persica HOM05D000532 ORTHO05D002414 5.2e-11 72.8 85 51.8
SalBow4G2655 Salvia bowleyana HOM05D004019 ORTHO05D005136 5.2e-11 72.8 76 44.7
arahy.Tifrunner.gnm1.ann1.P4KF2E Arachis hypogaea HOM05D004019 ORTHO05D005136 6.7e-11 72.4 88 43.2
ECA246G1280 Erigeron canadensis HOM05D004019 ORTHO05D005136 8.8e-11 72.0 74 48.6
MBI03_g19627_MAGBIO Magnolia biondii HOM05D004019 ORTHO05D005136 1.5e-10 71.2 79 45.6
SGA_v2.0_scaffold280G46835 Striga asiatica HOM05D004019 ORTHO05D005136 1.5e-10 71.2 76 47.4
FAN15G2285 Fragaria x ananassa HOM05D025131 ORTHO05D035788 2.0e-10 70.9 33 97.0
Ca_15687_v3 Cicer arietinum L. HOM05D004019 ORTHO05D005136 2.6e-10 70.5 77 46.8
Medtr3g108360 Medicago truncatula HOM05D004019 ORTHO05D005136 2.6e-10 70.5 72 43.1
PSO063G5962 Papaver somniferum HOM05D004019 ORTHO05D005136 2.6e-10 70.5 82 45.1
CsaV3_3G046830 Cucumis sativus L. HOM05D004019 ORTHO05D005136 3.3e-10 70.1 72 52.8
GSVIVG01035749001 Vitis vinifera HOM05D004019 ORTHO05D005136 3.3e-10 70.1 77 45.5
MSTRG.25887 Avicennia marina HOM05D004019 ORTHO05D005136 7.5e-10 68.9 75 40.0
TPR.G12417 Trifolium pratense HOM05D004019 ORTHO05D005136 7.5e-10 68.9 93 37.6
EL10Ac2g02527 Beta vulgaris HOM05D004019 ORTHO05D005136 1.3e-09 68.2 79 48.1
PSO782G0289 Papaver somniferum HOM05D004019 ORTHO05D005136 1.3e-09 68.2 82 43.9
ClCG05G017320 Citrullus lanatus HOM05D004019 ORTHO05D005136 2.2e-09 67.4 72 52.8
Sed0026885 Sechium edule HOM05D004019 ORTHO05D005136 2.8e-09 67.0 72 51.4
AUR62032391 Chenopodium quinoa HOM05D004019 ORTHO05D005136 3.7e-09 66.6 78 47.4
CSS0015272 Camellia sinensis var. sinensis HOM05D000532 ORTHO05D002414 4.8e-09 66.2 81 49.4
CSS0020828 Camellia sinensis var. sinensis HOM05D000532 ORTHO05D002414 4.8e-09 66.2 81 49.4
AUR62024824 Chenopodium quinoa HOM05D004019 ORTHO05D005136 4.8e-09 66.2 78 47.4
Duzib147G0076 Durio zibethinus HOM05D000532 ORTHO05D002414 1.1e-08 65.1 76 52.6
Dinv33756 Davidia involucrata HOM05D000532 ORTHO05D002414 1.4e-08 64.7 72 55.6
MD01G1191200 Malus domestica HOM05D000532 ORTHO05D002414 1.8e-08 64.3 83 50.6
AL4G17350 Arabidopsis lyrata HOM05D004019 ORTHO05D005136 2.4e-08 63.9 58 50.0
Dinv11530 Davidia involucrata HOM05D000532 ORTHO05D002414 2.4e-08 63.9 76 51.3
Ah.12g060350 Amaranthus hybridus HOM05D004019 ORTHO05D005136 3.1e-08 63.5 76 44.7
Potri.017G082300 Populus trichocarpa HOM05D000532 ORTHO05D002414 3.1e-08 63.5 72 55.6
Oeu052168.1 Olea europaea HOM05D000532 ORTHO05D002414 4.1e-08 63.2 64 54.7
Gohir.D04G049300 Gossypium hirsutum HOM05D000532 ORTHO05D002414 5.3e-08 62.8 80 51.2
Gorai.012G054600 Gossypium raimondii HOM05D000532 ORTHO05D002414 5.3e-08 62.8 80 51.2
Carub.0004s0550 Capsella rubella HOM05D004019 ORTHO05D005136 9.1e-08 62.0 58 48.3
Gohir.A05G365600 Gossypium hirsutum HOM05D000532 ORTHO05D002414 9.1e-08 62.0 80 51.2
Hma1.2p1_2160F.1_g315540 Hydrangea macrophylla HOM05D000532 ORTHO05D002414 9.1e-08 62.0 69 52.2
AT2G25730 Arabidopsis thaliana HOM05D004019 ORTHO05D005136 1.2e-07 61.6 58 48.3
Cc07_g03340 Coffea canephora HOM05D000532 ORTHO05D002414 2.0e-07 60.8 54 59.3
Lj1g0001270 Lotus japonicus HOM05D000532 ORTHO05D002414 2.0e-07 60.8 69 49.3
SalBow1G1149 Salvia bowleyana HOM05D000532 ORTHO05D002414 2.7e-07 60.5 61 55.7
unitig_747.g21873 Utricularia gibba HOM05D004019 ORTHO05D005136 2.7e-07 60.5 76 43.4
MSTRG.23942 Avicennia marina HOM05D000532 ORTHO05D002414 3.5e-07 60.1 73 49.3
CiPaw.04G017500 Carya illinoinensis HOM05D000532 ORTHO05D002414 3.5e-07 60.1 58 56.9
MSTRG.3326 Avicennia marina HOM05D000532 ORTHO05D002414 4.5e-07 59.7 79 48.1
BolC3t15586H Brassica oleracea HOM05D004019 ORTHO05D005136 4.5e-07 59.7 59 47.5
Potri.004G126800 Populus trichocarpa HOM05D000532 ORTHO05D002414 5.9e-07 59.3 70 54.3
TWI60G1603 Tripterygium wilfordii HOM05D000532 ORTHO05D002414 5.9e-07 59.3 53 56.6
CiPaw.03G027300 Carya illinoinensis HOM05D000532 ORTHO05D002414 7.7e-07 58.9 64 53.1
Gorai.006G017500 Gossypium raimondii HOM05D000532 ORTHO05D002414 7.7e-07 58.9 64 57.8
Nn3g17227 Nelumbo nucifera HOM05D000532 ORTHO05D002414 7.7e-07 58.9 74 45.9
QL02p081751 Quercus lobata HOM05D000532 ORTHO05D002414 7.7e-07 58.9 62 54.8
THA.LOC104803772 Tarenaya hassleriana HOM05D004019 ORTHO05D005136 7.7e-07 58.9 57 45.6
Gohir.A09G016700 Gossypium hirsutum HOM05D000532 ORTHO05D002414 1.0e-06 58.5 64 57.8
Sp4g05330 Schrenkiella parvula HOM05D004019 ORTHO05D005136 1.0e-06 58.5 57 45.6
Solyc02g087950.3 Solanum lycopersicum HOM05D000532 ORTHO05D002414 1.0e-06 58.5 78 48.7
Sopen02g032690 Solanum pennellii HOM05D000532 ORTHO05D002414 1.0e-06 58.5 78 48.7
Glyma.09G238900 Glycine max HOM05D000532 ORTHO05D002414 1.3e-06 58.2 73 47.9
Glyma.18G259000 Glycine max HOM05D000532 ORTHO05D002414 1.3e-06 58.2 73 47.9
Gohir.D09G015300 Gossypium hirsutum HOM05D000532 ORTHO05D002414 1.3e-06 58.2 64 57.8
arahy.Tifrunner.gnm1.ann1.6L79I3 Arachis hypogaea HOM05D000532 ORTHO05D002414 1.7e-06 57.8 55 54.5
Haze_14540 Corylus avellana HOM05D000532 ORTHO05D002414 1.7e-06 57.8 62 54.8
PGSC0003DMG400001422 Solanum tuberosum HOM05D000532 ORTHO05D002414 1.7e-06 57.8 78 48.7
Actinidia06090 Actinidia chinensis HOM05D000532 ORTHO05D002414 2.2e-06 57.4 79 49.4
C03p32450 Brassica napus HOM05D004019 ORTHO05D005136 2.9e-06 57.0 59 47.5
CAN.G1275.5 Capsicum annuum HOM05D000532 ORTHO05D002414 2.9e-06 57.0 62 53.2
CAN.G685.21 Capsicum annuum HOM05D000532 ORTHO05D002414 2.9e-06 57.0 62 53.2
Cfa007546 Carpinus fangiana HOM05D000532 ORTHO05D002414 3.8e-06 56.6 62 53.2
vmacro05696 Vaccinium macrocarpon HOM05D000532 ORTHO05D002414 3.8e-06 56.6 71 50.7
arahy.Tifrunner.gnm1.ann1.H6N0JR Arachis hypogaea HOM05D000532 ORTHO05D002414 5.0e-06 56.2 55 54.5
CAN.G206.150 Capsicum annuum HOM05D000532 ORTHO05D002414 6.5e-06 55.8 58 51.7
VMungo1383G2062 Vigna mungo HOM05D000532 ORTHO05D002414 6.5e-06 55.8 88 40.9
CARHR115530 Cardamine hirsuta HOM05D004019 ORTHO05D005136 8.5e-06 55.5 51 52.9
Nitab4.5_0000564g0060 Nicotiana tabacum HOM05D000532 ORTHO05D002414 8.5e-06 55.5 87 44.8
Oeu062111.1 Olea europaea HOM05D000532 ORTHO05D002414 8.5e-06 55.5 81 44.4


User provided reference genes

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