Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g30290 Fragaria vesca HOM05D004019 ORTHO05D035247 5.3e-90 334.3 168 100.0
FAN24G2522 Fragaria x ananassa HOM05D004019 ORTHO05D035247 9.3e-87 323.6 162 100.0
FvH4_2g30330 Fragaria vesca HOM05D004019 ORTHO05D005136 2.2e-19 99.8 67 77.6
FAN20G1524 Fragaria x ananassa HOM05D004019 ORTHO05D005136 2.2e-19 99.8 67 77.6
FAN24G2881 Fragaria x ananassa HOM05D004019 ORTHO05D005136 2.2e-19 99.8 67 77.6
Ciclev10007225m.g Citrus clementina HOM05D004019 ORTHO05D005136 2.4e-18 96.3 67 74.6
Prupe.1G464500 Prunus persica HOM05D004019 ORTHO05D005136 2.4e-18 96.3 67 73.1
MD15G1113500 Malus domestica HOM05D004019 ORTHO05D005136 4.1e-18 95.5 67 73.1
RcHm_v2.0_Chr6g0312581 Rosa chinensis HOM05D004019 ORTHO05D005136 4.1e-18 95.5 67 74.6
Ca_15687_v3 Cicer arietinum L. HOM05D004019 ORTHO05D005136 5.9e-17 91.7 67 70.1
Medtr3g108360 Medicago truncatula HOM05D004019 ORTHO05D005136 7.7e-17 91.3 67 70.1
DCAR_006256 Daucus carota HOM05D004019 ORTHO05D005136 1.3e-16 90.5 67 68.7
Psat5g025600 Pisum sativum HOM05D004019 ORTHO05D005136 1.3e-16 90.5 67 70.1
CANSAT25G1365 Cannabis sativa HOM05D004019 ORTHO05D005136 1.7e-16 90.1 67 70.1
Glyma.06G074700 Glycine max HOM05D004019 ORTHO05D005136 1.7e-16 90.1 67 68.7
Phvul.009G099400 Phaseolus vulgaris HOM05D004019 ORTHO05D005136 2.3e-16 89.7 67 68.7
Potri.006G244900 Populus trichocarpa HOM05D004019 ORTHO05D005136 2.3e-16 89.7 67 68.7
Sabra06G0191800 Salix brachista HOM05D004019 ORTHO05D005136 2.3e-16 89.7 67 68.7
VMungo1309G1295 Vigna mungo HOM05D004019 ORTHO05D005136 2.3e-16 89.7 67 68.7
EL10Ac2g02527 Beta vulgaris HOM05D004019 ORTHO05D005136 3.8e-16 89.0 67 70.1
CANSAT56G4370 Cannabis sativa HOM05D004019 ORTHO05D005136 3.8e-16 89.0 66 69.7
Cpa.g.sc205.26 Carica papaya HOM05D004019 ORTHO05D005136 3.8e-16 89.0 67 70.1
AT2G25730 Arabidopsis thaliana HOM05D004019 ORTHO05D005136 5.0e-16 88.6 88 56.8
Carub.0004s0550 Capsella rubella HOM05D004019 ORTHO05D005136 5.0e-16 88.6 88 55.7
COL.COLO4_18737 Corchorus olitorius HOM05D004019 ORTHO05D005136 5.0e-16 88.6 67 70.1
Sp4g05330 Schrenkiella parvula HOM05D004019 ORTHO05D005136 5.0e-16 88.6 88 55.7
Thecc.09G037700 Theobroma cacao HOM05D004019 ORTHO05D005136 5.0e-16 88.6 67 70.1
TWI63G0705 Tripterygium wilfordii HOM05D004019 ORTHO05D005136 5.0e-16 88.6 67 70.1
Gohir.A05G049350 Gossypium hirsutum HOM05D004019 ORTHO05D005136 6.6e-16 88.2 67 70.1
Gohir.D05G051300 Gossypium hirsutum HOM05D004019 ORTHO05D005136 6.6e-16 88.2 67 70.1
Gorai.009G053000 Gossypium raimondii HOM05D004019 ORTHO05D005136 6.6e-16 88.2 67 70.1
QL12p030977 Quercus lobata HOM05D004019 ORTHO05D005136 8.6e-16 87.8 67 67.2
AL4G17350 Arabidopsis lyrata HOM05D004019 ORTHO05D005136 1.1e-15 87.4 88 55.7
Cfa013229 Carpinus fangiana HOM05D004019 ORTHO05D005136 1.1e-15 87.4 67 68.7
Lj1g0020850 Lotus japonicus HOM05D004019 ORTHO05D005136 1.1e-15 87.4 67 67.2
TPR.G12417 Trifolium pratense HOM05D004019 ORTHO05D005136 1.1e-15 87.4 67 71.6
Aa31LG5G9950 Aethionema arabicum HOM05D004019 ORTHO05D005136 2.5e-15 86.3 88 53.4
MSTRG.25887 Avicennia marina HOM05D004019 ORTHO05D005136 2.5e-15 86.3 67 64.2
Cc08_g08140 Coffea canephora HOM05D004019 ORTHO05D005136 2.5e-15 86.3 67 68.7
Atru.chr7.2305 Acer truncatum HOM05D004019 ORTHO05D005136 3.3e-15 85.9 65 69.2
Actinidia13300 Actinidia chinensis HOM05D004019 ORTHO05D005136 3.3e-15 85.9 67 64.2
CiPaw.07G216600 Carya illinoinensis HOM05D004019 ORTHO05D005136 3.3e-15 85.9 67 67.2
Lalb_Chr11g0064021 Lupinus albus HOM05D004019 ORTHO05D005136 3.3e-15 85.9 67 67.2
Manes.03G064200 Manihot esculenta HOM05D004019 ORTHO05D005136 3.3e-15 85.9 67 65.7
Oeu063261.5 Olea europaea HOM05D004019 ORTHO05D005136 3.3e-15 85.9 67 64.2
A03p27040 Brassica napus HOM05D004019 ORTHO05D005136 4.3e-15 85.5 83 56.6
C03p32450 Brassica napus HOM05D004019 ORTHO05D005136 4.3e-15 85.5 83 56.6
BolC3t15586H Brassica oleracea HOM05D004019 ORTHO05D005136 4.3e-15 85.5 83 56.6
BraA03t11915Z Brassica rapa HOM05D004019 ORTHO05D005136 4.3e-15 85.5 83 56.6
GSVIVG01035749001 Vitis vinifera HOM05D004019 ORTHO05D005136 4.3e-15 85.5 67 64.2
CARHR115530 Cardamine hirsuta HOM05D004019 ORTHO05D005136 5.6e-15 85.1 88 52.3
AUR62024824 Chenopodium quinoa HOM05D004019 ORTHO05D005136 5.6e-15 85.1 67 67.2
AUR62032391 Chenopodium quinoa HOM05D004019 ORTHO05D005136 5.6e-15 85.1 67 67.2
TAR624G1332 Trochodendron aralioides HOM05D004019 ORTHO05D005136 5.6e-15 85.1 68 69.1
ECA246G1280 Erigeron canadensis HOM05D004019 ORTHO05D005136 7.3e-15 84.7 67 67.2
Lj8C607G10 Lonicera japonica HOM05D004019 ORTHO05D005136 7.3e-15 84.7 67 67.2
Ah.12g060340 Amaranthus hybridus HOM05D004019 ORTHO05D005136 9.5e-15 84.3 67 67.2
Dinv14207 Davidia involucrata HOM05D004019 ORTHO05D005136 9.5e-15 84.3 67 65.7
Thhalv10000005m.g Eutrema salsugineum HOM05D004019 ORTHO05D005136 9.5e-15 84.3 64 68.8
Sc09g0008920 Simmondsia chinensis HOM05D004019 ORTHO05D005136 9.5e-15 84.3 67 70.1
Haze_21653 Corylus avellana HOM05D004019 ORTHO05D005136 1.2e-14 84.0 61 72.1
Migut.A00257 Erythranthe guttata HOM05D004019 ORTHO05D005136 1.2e-14 84.0 67 62.7
HanXRQChr17g0539391 Helianthus annuus HOM05D004019 ORTHO05D005136 1.2e-14 84.0 67 65.7
arahy.Tifrunner.gnm1.ann1.P4KF2E Arachis hypogaea HOM05D004019 ORTHO05D005136 1.6e-14 83.6 68 66.2
Dinv30236 Davidia involucrata HOM05D004019 ORTHO05D005136 1.6e-14 83.6 67 67.2
Nn8g39221 Nelumbo nucifera HOM05D004019 ORTHO05D005136 1.6e-14 83.6 68 69.1
arahy.Tifrunner.gnm1.ann1.WYF2AC Arachis hypogaea HOM05D004019 ORTHO05D005136 2.1e-14 83.2 69 65.2
CsaV3_3G046830 Cucumis sativus L. HOM05D004019 ORTHO05D005136 2.1e-14 83.2 67 64.2
MBI03_g19627_MAGBIO Magnolia biondii HOM05D004019 ORTHO05D005136 3.6e-14 82.4 68 66.2
vmacro11105 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 3.6e-14 82.4 67 62.7
ATR1120G055 Amborella trichopoda HOM05D004019 ORTHO05D005136 6.1e-14 81.6 69 65.2
THA.LOC104803772 Tarenaya hassleriana HOM05D004019 ORTHO05D005136 8.0e-14 81.3 67 64.2
Lsat_1_v5_gn_3_27801 Lactuca sativa HOM05D004019 ORTHO05D005136 1.8e-13 80.1 68 63.2
Nitab4.5_0000250g0120 Nicotiana tabacum HOM05D004019 ORTHO05D005136 1.8e-13 80.1 86 54.7
Peaxi162Scf00105g00818 Petunia axillaris HOM05D004019 ORTHO05D005136 1.8e-13 80.1 67 62.7
Rhsim02G0185100 Rhododendron simsii HOM05D004019 ORTHO05D005136 3.0e-13 79.3 67 61.2
SGA_v2.0_scaffold280G46835 Striga asiatica HOM05D004019 ORTHO05D005136 1.2e-12 77.4 67 61.2
Aqoxy7G01749 Aquilegia oxysepala HOM05D004019 ORTHO05D005136 1.5e-12 77.0 68 64.7
CSS0034867 Camellia sinensis var. sinensis HOM05D004019 ORTHO05D005136 1.5e-12 77.0 67 61.2
MELO3C003655.2 Cucumis melo HOM05D004019 ORTHO05D005136 3.4e-12 75.9 67 59.7
HPP92_006443 Vanilla planifolia HOM05D004019 ORTHO05D005136 4.4e-12 75.5 67 56.7
Sed0026885 Sechium edule HOM05D004019 ORTHO05D005136 1.3e-11 73.9 67 56.7
Eucgr.C01572 Eucalyptus grandis HOM05D004019 ORTHO05D005136 1.7e-11 73.6 67 61.2
CDE10G0547 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 3.7e-11 72.4 67 58.2
PGR031G1071 Punica granatum HOM05D004019 ORTHO05D005136 1.4e-10 70.5 68 58.8
PSO063G5962 Papaver somniferum HOM05D004019 ORTHO05D005136 2.4e-10 69.7 67 58.2
PSO782G0289 Papaver somniferum HOM05D004019 ORTHO05D005136 2.4e-10 69.7 67 58.2
Zm00001eb161040 Zea mays HOM05D004019 ORTHO05D005136 1.2e-09 67.4 68 58.8
SEGI_05898 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 5.9e-09 65.1 70 54.3
unitig_747.g21875 Utricularia gibba HOM05D004019 ORTHO05D005136 1.7e-08 63.5 118 40.7
Solyc08g068010.2 Solanum lycopersicum HOM05D004019 ORTHO05D005136 1.1e-07 60.8 67 53.7
Sopen08g021930 Solanum pennellii HOM05D004019 ORTHO05D005136 1.5e-07 60.5 70 54.3
SHI11643 Sapria himalayana HOM05D004019 ORTHO05D035247 2.8e-06 56.2 53 56.6


User provided reference genes

Program Settings