Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g28941 Fragaria vesca HOM05D006421 ORTHO05D008268 4.2e-275 951.4 773 100.0
FAN24G1512 Fragaria x ananassa HOM05D006421 ORTHO05D008268 5.6e-272 941.0 773 96.2
FAN27G1287 Fragaria x ananassa HOM05D006421 ORTHO05D008268 1.5e-245 853.2 773 86.9
FAN20G2434 Fragaria x ananassa HOM05D006421 ORTHO05D008268 1.0e-244 850.5 777 83.8
FAN15G0163 Fragaria x ananassa HOM05D006421 ORTHO05D008268 5.0e-244 848.2 773 87.5
RcHm_v2.0_Chr6g0297771 Rosa chinensis HOM05D006421 ORTHO05D008268 4.3e-203 712.2 770 81.8
Prupe.1G482200 Prunus persica HOM05D006421 ORTHO05D008268 8.7e-148 528.5 782 64.5
MD15G1126300 Malus domestica HOM05D006421 ORTHO05D008268 7.2e-134 482.3 777 62.5
Gorai.001G034500 Gossypium raimondii HOM05D006421 ORTHO05D008268 2.2e-127 460.7 773 60.2
Gohir.A07G028900 Gossypium hirsutum HOM05D006421 ORTHO05D008268 2.3e-124 450.7 773 62.6
Gohir.D07G032900 Gossypium hirsutum HOM05D006421 ORTHO05D008268 5.7e-123 446.0 773 62.9
Duzib168G2139 Durio zibethinus HOM05D006421 ORTHO05D008268 7.5e-115 419.1 775 61.4
Eucgr.C01728 Eucalyptus grandis HOM05D006421 ORTHO05D008268 2.2e-114 417.5 774 55.6
Actinidia15670 Actinidia chinensis HOM05D006421 ORTHO05D008268 2.8e-114 417.2 772 52.2
Hma1.2p1_0243F.1_g100900 Hydrangea macrophylla HOM05D006421 ORTHO05D008268 1.1e-113 415.2 744 64.0
GSVIVG01035871001 Vitis vinifera HOM05D006421 ORTHO05D008268 7.0e-113 412.5 776 62.2
TWI34G1016 Tripterygium wilfordii HOM05D006421 ORTHO05D008268 2.7e-112 410.6 773 57.3
Cfa013134 Carpinus fangiana HOM05D006421 ORTHO05D008268 8.8e-108 395.6 777 64.4
Duzib187G1366 Durio zibethinus HOM05D006421 ORTHO05D008268 3.4e-107 393.7 775 57.9
AT4G32190 Arabidopsis thaliana HOM05D006421 ORTHO05D008268 3.8e-103 380.2 773 55.4
Haze_21503 Corylus avellana HOM05D006421 ORTHO05D008268 1.1e-102 378.6 778 54.4
CiPaw.07G224100 Carya illinoinensis HOM05D006421 ORTHO05D008268 7.2e-102 375.9 762 55.8
COL.COLO4_18870 Corchorus olitorius HOM05D006421 ORTHO05D008268 1.5e-99 368.2 773 62.1
Sopen08g011590 Solanum pennellii HOM05D006421 ORTHO05D008268 2.0e-99 367.9 742 52.0
Manes.16G122900 Manihot esculenta HOM05D006421 ORTHO05D008268 5.7e-99 366.3 773 55.4
Solyc08g022030.3 Solanum lycopersicum HOM05D006421 ORTHO05D008268 5.7e-99 366.3 772 50.3
QL02p021457 Quercus lobata HOM05D006421 ORTHO05D008268 1.7e-98 364.8 775 61.7
PGSC0003DMG400004306 Solanum tuberosum HOM05D006421 ORTHO05D008268 1.7e-98 364.8 772 57.1
EL10Ac2g04201 Beta vulgaris HOM05D006421 ORTHO05D008268 1.1e-97 362.1 729 58.7
Potri.006G255800 Populus trichocarpa HOM05D006421 ORTHO05D008268 2.4e-97 360.9 774 59.0
AL7G19640 Arabidopsis lyrata HOM05D006421 ORTHO05D008268 2.3e-95 354.4 767 56.2
Thecc.09G023300 Theobroma cacao HOM05D006421 ORTHO05D008268 2.3e-95 354.4 685 63.9
Thhalv10024464m.g Eutrema salsugineum HOM05D006421 ORTHO05D008268 4.3e-94 350.1 775 56.3
CAN.G117.5 Capsicum annuum HOM05D006421 ORTHO05D008268 2.2e-90 337.8 738 53.7
Nn8g39522 Nelumbo nucifera HOM05D006421 ORTHO05D008268 1.1e-89 335.5 763 59.4
arahy.Tifrunner.gnm1.ann1.1F1BFK Arachis hypogaea HOM05D006421 ORTHO05D008268 9.2e-89 332.4 773 55.1
Nitab4.5_0002408g0020 Nicotiana tabacum HOM05D006421 ORTHO05D008268 2.7e-88 330.9 750 59.3
AUR62031532 Chenopodium quinoa HOM05D006421 ORTHO05D008268 6.0e-88 329.7 793 44.4
Dinv08633 Davidia involucrata HOM05D006421 ORTHO05D008268 1.7e-87 328.2 731 57.6
Cc08_g00500 Coffea canephora HOM05D006421 ORTHO05D008268 8.6e-87 325.9 752 56.4
TAR625G1222 Trochodendron aralioides HOM05D006421 ORTHO05D008268 1.5e-86 325.1 780 57.4
Oeu053117.1 Olea europaea HOM05D006421 ORTHO05D008268 4.0e-84 317.0 759 58.1
Psat6g029040 Pisum sativum HOM05D006421 ORTHO05D008268 5.2e-84 316.6 785 55.9
arahy.Tifrunner.gnm1.ann1.658XMK Arachis hypogaea HOM05D006421 ORTHO05D008268 4.4e-83 313.5 773 53.4
Nitab4.5_0002042g0070 Nicotiana tabacum HOM05D006421 ORTHO05D008268 4.4e-83 313.5 750 59.2
Sabra06G0200100 Salix brachista HOM05D006421 ORTHO05D008268 7.5e-83 312.8 774 56.5
Sp7g29980 Schrenkiella parvula HOM05D006421 ORTHO05D008268 6.0e-80 303.1 761 56.8
DCAR_001538 Daucus carota HOM05D006421 ORTHO05D008268 2.3e-79 301.2 768 49.5
SalBow4G3177 Salvia bowleyana HOM05D006421 ORTHO05D008268 5.1e-79 300.1 757 55.1
vmacro05173 Vaccinium macrocarpon HOM05D006421 ORTHO05D008268 8.6e-79 299.3 756 52.6
Hund04507 Selenicereus undatus HOM05D006421 ORTHO05D008268 1.1e-78 298.9 790 51.3
Medtr1g012620 Medicago truncatula HOM05D006421 ORTHO05D008268 4.3e-78 297.0 784 56.2
Migut.A00033 Erythranthe guttata HOM05D006421 ORTHO05D008268 7.3e-78 296.2 773 53.4
TPR.G15679 Trifolium pratense HOM05D006421 ORTHO05D008268 9.5e-78 295.8 783 57.3
Cpa.g.sc217.10 Carica papaya HOM05D006421 ORTHO05D008268 6.8e-76 289.7 763 59.5
MSTRG.11610 Avicennia marina HOM05D006421 ORTHO05D008268 2.0e-75 288.1 763 55.0
Rhsim07G0159500 Rhododendron simsii HOM05D006421 ORTHO05D008268 9.9e-75 285.8 751 50.5
BcaNung03144 Brassica carinata HOM05D006421 ORTHO05D008268 2.2e-74 284.6 766 52.2
CANSAT35G0532 Cannabis sativa HOM05D006421 ORTHO05D008268 2.4e-73 281.2 766 53.3
Lj8P705T28 Lonicera japonica HOM05D006421 ORTHO05D008268 2.4e-73 281.2 725 47.2
THA.LOC104818618 Tarenaya hassleriana HOM05D006421 ORTHO05D008268 4.6e-72 276.9 778 51.3
SGA_v2.0_scaffold20G09108 Striga asiatica HOM05D002695 ORTHO05D002964 7.8e-72 276.2 716 52.7
Lj5g0021919 Lotus japonicus HOM05D006421 ORTHO05D008268 1.6e-69 268.5 780 55.4
PSO170G2190 Papaver somniferum HOM05D006421 ORTHO05D008268 2.8e-69 267.7 770 49.4
CARHR240120 Cardamine hirsuta HOM05D006421 ORTHO05D008268 6.8e-68 263.1 779 49.4
A01p06150 Brassica napus HOM05D006421 ORTHO05D008268 1.2e-67 262.3 465 50.5
Oeu033132.1 Olea europaea HOM05D006421 ORTHO05D008268 1.2e-67 262.3 751 52.3
VMungo0647G1945 Vigna mungo HOM05D006421 ORTHO05D008268 2.0e-67 261.5 782 54.9
Actinidia14601 Actinidia chinensis HOM05D006421 ORTHO05D008268 1.4e-65 255.4 773 52.8
Ciclev10007642m.g Citrus clementina HOM05D006421 ORTHO05D008268 1.4e-65 255.4 684 53.1
ECA246G1400 Erigeron canadensis HOM05D002695 ORTHO05D002964 1.4e-65 255.4 775 52.4
C01p06780 Brassica napus HOM05D006421 ORTHO05D008268 1.9e-65 255.0 779 50.8
BolC1t00672H Brassica oleracea HOM05D006421 ORTHO05D008268 1.9e-65 255.0 779 50.8
Phvul.001G050600 Phaseolus vulgaris HOM05D006421 ORTHO05D008268 5.4e-65 253.4 778 53.9
TAR636G3563 Trochodendron aralioides HOM05D006421 ORTHO05D008268 3.0e-63 247.7 485 55.1
Carub.0007s0836 Capsella rubella HOM05D006421 ORTHO05D008268 1.1e-62 245.7 773 47.2
FAN15G2294 Fragaria x ananassa HOM05D006421 ORTHO05D008268 4.8e-61 240.4 355 53.2
BcaC09g52004 Brassica carinata HOM05D006421 ORTHO05D008268 1.5e-59 235.3 769 50.7
CSS0048874 Camellia sinensis var. sinensis HOM05D006421 ORTHO05D008268 1.5e-59 235.3 759 48.9
AUR62012410 Chenopodium quinoa HOM05D006421 ORTHO05D008268 1.5e-59 235.3 743 44.3
Peaxi162Scf01131g00117 Petunia axillaris HOM05D006421 ORTHO05D008268 4.2e-57 227.3 752 52.3
FAN15G3016 Fragaria x ananassa HOM05D006421 ORTHO05D008268 1.3e-55 222.2 263 76.4
PGR031G1896 Punica granatum HOM05D006421 ORTHO05D008268 1.3e-55 222.2 772 48.4
C02p24100 Brassica napus HOM05D006421 ORTHO05D008268 6.2e-53 213.4 445 47.6
Atru.chr7.2443 Acer truncatum HOM05D006421 ORTHO05D008268 6.9e-52 209.9 721 51.7
BcaC03g14918 Brassica carinata HOM05D006421 ORTHO05D008268 9.0e-52 209.5 414 49.5
Lalb_Chr24g0402151 Lupinus albus HOM05D006421 ORTHO05D008268 1.2e-51 209.1 767 48.0
PSO017G0123 Papaver somniferum HOM05D006421 ORTHO05D008268 4.5e-51 207.2 765 45.8
HanXRQChr16g0510771 Helianthus annuus HOM05D006421 ORTHO05D008268 8.4e-50 203.0 776 44.8
ClCG05G016810 Citrullus lanatus HOM05D006421 ORTHO05D008268 1.4e-49 202.2 792 49.4
Aa31LG2G17740 Aethionema arabicum HOM05D006421 ORTHO05D008268 3.5e-48 197.6 765 48.0
CSS0036831 Camellia sinensis var. sinensis HOM05D006421 ORTHO05D008268 1.3e-47 195.7 761 47.4
MELO3C003706.2 Cucumis melo HOM05D006421 ORTHO05D008268 2.3e-47 194.9 781 41.4
CsaV3_3G046330 Cucumis sativus L. HOM05D006421 ORTHO05D008268 1.4e-44 185.7 781 46.0
Ca_13033_v3 Cicer arietinum L. HOM05D006421 ORTHO05D008268 4.0e-44 184.1 783 45.3
Sc09g0008160 Simmondsia chinensis HOM05D006421 ORTHO05D008268 2.9e-42 177.9 516 42.1
Sed0003255 Sechium edule HOM05D006421 ORTHO05D008268 4.9e-42 177.2 751 45.4
TAR636G0610 Trochodendron aralioides HOM05D006421 ORTHO05D008268 1.4e-33 149.1 157 56.7
Glyma.17G211900 Glycine max HOM05D006421 ORTHO05D008268 4.6e-32 144.1 341 52.8
unitig_748.g8080 Utricularia gibba HOM05D006421 ORTHO05D008268 1.1e-30 139.4 751 44.9
BraA10t43273Z Brassica rapa HOM05D006421 ORTHO05D008268 2.8e-29 134.8 192 41.7
Glyma.14G115951 Glycine max HOM05D006421 ORTHO05D008268 2.7e-24 118.2 204 43.6
Zm00001eb206500 Zea mays HOM05D006421 ORTHO05D008268 1.0e-23 116.3 719 41.2
Lsat_1_v5_gn_5_30240 Lactuca sativa HOM05D006421 ORTHO05D008268 1.5e-22 112.5 751 38.7
Potri.018G026300 Populus trichocarpa HOM05D006421 ORTHO05D008268 2.5e-22 111.7 433 30.7
SEGI_00734 Sequoiadendron giganteum HOM05D006421 ORTHO05D008268 3.4e-19 101.3 768 35.8
FAN15G3111 Fragaria x ananassa HOM05D006421 ORTHO05D008268 5.9e-19 100.5 131 55.7
SEGI_28581 Sequoiadendron giganteum HOM05D006421 ORTHO05D008268 1.9e-17 95.5 473 34.9
C02p24000 Brassica napus HOM05D006421 ORTHO05D008268 7.9e-16 90.1 344 54.9
Glyma.14G115900 Glycine max HOM05D006421 ORTHO05D008268 3.3e-14 84.7 165 41.2
CDE07G0223 Ceratophyllum demersum HOM05D006421 ORTHO05D008268 7.7e-11 73.6 101 37.6
ATR0800G069 Amborella trichopoda HOM05D006421 ORTHO05D008268 1.0e-10 73.2 766 44.5
A03p32460 Brassica napus HOM05D003015 ORTHO05D024548 2.9e-10 71.6 86 52.3
BraA07t31256Z Brassica rapa HOM05D000793 ORTHO05D024548 5.0e-10 70.9 86 52.3
Sabra18G0028800 Salix brachista HOM05D006421 ORTHO05D008268 5.0e-10 70.9 122 45.1
Os02g0186400 Oryza sativa ssp. japonica HOM05D006421 ORTHO05D008268 2.3e-07 62.0 763 41.9
Sabra18G0029000 Salix brachista HOM05D006421 ORTHO05D008268 6.7e-07 60.5 99 44.4
CDE06G1662 Ceratophyllum demersum HOM05D006421 ORTHO05D008268 8.8e-07 60.1 71 42.3


User provided reference genes

Program Settings