Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g28330 Fragaria vesca HOM05D004744 ORTHO05D005655 0.0e+00 1215.7 625 100.0
FAN24G2392 Fragaria x ananassa HOM05D004744 ORTHO05D005655 0.0e+00 1205.7 625 99.2
FAN20G1207 Fragaria x ananassa HOM05D004744 ORTHO05D005655 0.0e+00 1184.5 625 97.3
FAN27G1080 Fragaria x ananassa HOM05D004744 ORTHO05D005655 0.0e+00 1166.4 624 95.5
RcHm_v2.0_Chr6g0297241 Rosa chinensis HOM05D004744 ORTHO05D005655 8.0e-309 1063.1 626 87.1
MD15G1130500 Malus domestica HOM05D004744 ORTHO05D005655 8.6e-271 936.8 622 77.7
QL02p020429 Quercus lobata HOM05D004744 ORTHO05D005655 1.9e-238 829.3 630 66.7
Thecc.09G019800 Theobroma cacao HOM05D004744 ORTHO05D005655 1.9e-238 829.3 627 66.8
GSVIVG01035922001 Vitis vinifera HOM05D004744 ORTHO05D005655 1.6e-237 826.2 624 66.8
Atru.chr7.2497 Acer truncatum HOM05D004744 ORTHO05D005655 6.4e-234 814.3 628 66.1
Gohir.D06G101900 Gossypium hirsutum HOM05D004744 ORTHO05D005655 4.2e-233 811.6 625 65.8
Gorai.010G116900 Gossypium raimondii HOM05D004744 ORTHO05D005655 1.0e-231 807.0 630 65.4
Ciclev10007726m.g Citrus clementina HOM05D004744 ORTHO05D005655 1.5e-230 803.1 625 64.8
CANSAT01G0649 Cannabis sativa HOM05D004744 ORTHO05D005655 9.6e-230 800.4 626 64.9
Potri.018G022800 Populus trichocarpa HOM05D004744 ORTHO05D005655 1.4e-228 796.6 623 64.7
Prupe.1G485900 Prunus persica HOM05D004744 ORTHO05D005655 5.8e-227 791.2 569 72.9
TAR625G1411 Trochodendron aralioides HOM05D004744 ORTHO05D005655 2.2e-226 789.3 628 64.0
CiPaw.08G008500 Carya illinoinensis HOM05D004744 ORTHO05D005655 2.9e-226 788.9 625 64.5
Sabra18G0025200 Salix brachista HOM05D004744 ORTHO05D005655 9.3e-225 783.9 623 63.9
Lj1g0018058 Lotus japonicus HOM05D004744 ORTHO05D005655 5.3e-220 768.1 625 61.6
Haze_21464 Corylus avellana HOM05D004744 ORTHO05D005655 1.2e-219 766.9 655 61.7
Actinidia13213 Actinidia chinensis HOM05D004744 ORTHO05D005655 5.0e-218 761.5 625 61.0
Rhsim02G0205700 Rhododendron simsii HOM05D004744 ORTHO05D005655 4.2e-217 758.4 627 61.4
Ca_15759_v3 Cicer arietinum L. HOM05D004744 ORTHO05D005655 5.5e-217 758.1 625 61.9
THA.LOC104805576 Tarenaya hassleriana HOM05D004744 ORTHO05D005655 7.9e-216 754.2 627 60.9
Lalb_Chr08g0244261 Lupinus albus HOM05D004744 ORTHO05D005655 1.5e-214 750.0 627 60.3
CSS0007985 Camellia sinensis var. sinensis HOM05D004744 ORTHO05D005655 6.3e-213 744.6 629 61.4
Psat5g030800 Pisum sativum HOM05D004744 ORTHO05D005655 8.2e-213 744.2 623 61.8
Sed0024238 Sechium edule HOM05D004744 ORTHO05D005655 1.1e-212 743.8 623 62.6
Glyma.02G173300 Glycine max HOM05D004744 ORTHO05D005655 3.4e-211 738.8 619 61.2
Glyma.02G001200 Glycine max HOM05D004744 ORTHO05D005655 7.2e-209 731.1 619 60.9
Carub.0007s0850 Capsella rubella HOM05D004744 ORTHO05D005655 2.1e-208 729.6 617 60.3
Aqoxy7G03541 Aquilegia oxysepala HOM05D004744 ORTHO05D005655 1.4e-207 726.9 627 59.8
MELO3C016990.2 Cucumis melo HOM05D004744 ORTHO05D005655 8.8e-207 724.2 623 61.3
Cfa013106 Carpinus fangiana HOM05D004744 ORTHO05D005655 2.6e-206 722.6 568 65.0
Aa31LG2G18030 Aethionema arabicum HOM05D004744 ORTHO05D005655 5.7e-206 721.5 606 60.1
arahy.Tifrunner.gnm1.ann1.8I84Z2 Arachis hypogaea HOM05D004744 ORTHO05D005655 5.7e-206 721.5 623 59.2
CsaV3_4G036900 Cucumis sativus L. HOM05D004744 ORTHO05D005655 1.3e-205 720.3 625 61.1
arahy.Tifrunner.gnm1.ann1.LGG0U4 Arachis hypogaea HOM05D004744 ORTHO05D005655 2.2e-205 719.5 623 59.7
AL7G19840 Arabidopsis lyrata HOM05D004744 ORTHO05D005655 3.7e-205 718.8 617 59.5
PGR142G3966 Punica granatum HOM05D004744 ORTHO05D005655 1.4e-204 716.8 632 58.5
Phvul.007G279700 Phaseolus vulgaris HOM05D004744 ORTHO05D005655 3.1e-204 715.7 639 58.7
VMungo0720G0351 Vigna mungo HOM05D004744 ORTHO05D005655 4.1e-204 715.3 619 59.8
Sopen08g011940 Solanum pennellii HOM05D004744 ORTHO05D005655 6.9e-204 714.5 628 57.3
Medtr3g106410 Medicago truncatula HOM05D004744 ORTHO05D005655 2.6e-203 712.6 620 59.7
Lsat_1_v5_gn_1_43821 Lactuca sativa HOM05D004744 ORTHO05D005655 4.5e-203 711.8 627 56.9
BcaNung03134 Brassica carinata HOM05D004744 ORTHO05D005655 7.7e-203 711.1 618 59.1
Thhalv10024640m.g Eutrema salsugineum HOM05D004744 ORTHO05D005655 1.0e-202 710.7 637 57.3
BcaC09g51994 Brassica carinata HOM05D004744 ORTHO05D005655 1.7e-202 709.9 620 58.7
BolC1t00685H Brassica oleracea HOM05D004744 ORTHO05D005655 1.7e-202 709.9 620 58.7
Sp7g29850 Schrenkiella parvula HOM05D004744 ORTHO05D005655 6.5e-202 708.0 617 59.0
C01p06880 Brassica napus HOM05D004744 ORTHO05D005655 8.5e-202 707.6 620 58.7
TPR.G3127 Trifolium pratense HOM05D004744 ORTHO05D005655 8.5e-202 707.6 661 57.3
CARHR239950 Cardamine hirsuta HOM05D004744 ORTHO05D005655 1.2e-200 703.7 619 57.5
HanXRQChr01g0030631 Helianthus annuus HOM05D004744 ORTHO05D005655 1.2e-200 703.7 622 56.4
A01p06240 Brassica napus HOM05D004744 ORTHO05D005655 1.6e-200 703.4 618 58.1
BraA01t00591Z Brassica rapa HOM05D004744 ORTHO05D005655 2.7e-200 702.6 621 58.1
TWI32G0623 Tripterygium wilfordii HOM05D004744 ORTHO05D005655 2.7e-200 702.6 586 62.8
CAN.G326.4 Capsicum annuum HOM05D004744 ORTHO05D005655 7.4e-198 694.5 627 56.8
AT4G32050 Arabidopsis thaliana HOM05D004744 ORTHO05D005655 1.8e-196 689.9 617 58.2
ECA248G1191 Erigeron canadensis HOM05D004744 ORTHO05D005655 2.4e-196 689.5 629 55.3
PSO063G6514 Papaver somniferum HOM05D004744 ORTHO05D005655 2.0e-195 686.4 631 56.1
Lj8C731T12 Lonicera japonica HOM05D004744 ORTHO05D005655 3.8e-194 682.2 564 59.8
Manes.03G012200 Manihot esculenta HOM05D004744 ORTHO05D005655 9.4e-193 677.6 567 61.2
Oeu033353.1 Olea europaea HOM05D004744 ORTHO05D005655 1.2e-192 677.2 661 55.5
Nitab4.5_0002992g0040 Nicotiana tabacum HOM05D004744 ORTHO05D005655 2.0e-190 669.8 624 55.9
RcHm_v2.0_Chr2g0139901 Rosa chinensis HOM05D004744 ORTHO05D005655 3.1e-188 662.5 600 61.7
ClCG05G016620 Citrullus lanatus HOM05D004744 ORTHO05D005655 4.1e-188 662.1 626 57.8
Cc08_g00230 Coffea canephora HOM05D004744 ORTHO05D005655 4.1e-188 662.1 630 53.7
Solyc08g041780.3 Solanum lycopersicum HOM05D004744 ORTHO05D005655 2.5e-185 652.9 628 54.0
MSTRG.11596 Avicennia marina HOM05D004744 ORTHO05D005655 5.5e-185 651.7 630 54.6
Cpa.g.sc187.24 Carica papaya HOM05D004744 ORTHO05D005655 2.3e-183 646.4 534 62.4
CDE05G1537 Ceratophyllum demersum HOM05D004744 ORTHO05D005655 3.0e-183 646.0 624 54.0
Lj1g0024423 Lotus japonicus HOM05D004744 ORTHO05D005655 5.7e-182 641.7 626 55.8
Dinv18156 Davidia involucrata HOM05D004744 ORTHO05D005655 1.4e-180 637.1 520 61.3
Migut.A00009 Erythranthe guttata HOM05D004744 ORTHO05D005655 7.0e-180 634.8 629 53.6
vmacro11211 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 9.1e-180 634.4 511 62.6
vmacro11210 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 2.0e-179 633.3 511 62.4
Eucgr.C01702 Eucalyptus grandis HOM05D004744 ORTHO05D005655 8.6e-178 627.9 528 59.8
AUR62015365 Chenopodium quinoa HOM05D004744 ORTHO05D005655 3.3e-177 625.9 587 54.2
AUR62012029 Chenopodium quinoa HOM05D004744 ORTHO05D005655 1.6e-176 623.6 587 54.0
EL10Ac3g06914 Beta vulgaris HOM05D004744 ORTHO05D005655 1.0e-175 620.9 626 51.4
SGA_v2.0_scaffold64G21986 Striga asiatica HOM05D004744 ORTHO05D005655 3.7e-173 612.5 662 51.2
DCAR_000582 Daucus carota HOM05D004744 ORTHO05D005655 1.3e-170 604.0 630 51.6
ATR0767G197 Amborella trichopoda HOM05D004744 ORTHO05D005655 1.6e-168 597.0 625 51.7
Gohir.A06G099700 Gossypium hirsutum HOM05D004744 ORTHO05D005655 1.5e-166 590.5 465 63.4
COL.COLO4_18910 Corchorus olitorius HOM05D004744 ORTHO05D005655 5.4e-164 582.0 451 67.0
Sc20g0001320 Simmondsia chinensis HOM05D004744 ORTHO05D005655 5.6e-161 572.0 514 57.0
HPP92_003269 Vanilla planifolia HOM05D004744 ORTHO05D005655 6.8e-159 565.1 630 49.2
Nitab4.5_0005958g0020 Nicotiana tabacum HOM05D004744 ORTHO05D005655 8.9e-159 564.7 550 53.3
BcaC06g30946 Brassica carinata HOM05D004744 ORTHO05D005655 1.2e-158 564.3 620 49.4
Os02g0798700 Oryza sativa ssp. japonica HOM05D004744 ORTHO05D005655 2.6e-158 563.1 626 47.8
Nn8g39704 Nelumbo nucifera HOM05D004744 ORTHO05D005655 2.7e-155 553.1 469 60.3
CAN.G435.2 Capsicum annuum HOM05D004744 ORTHO05D005655 6.0e-155 552.0 535 54.8
TPR.G21279 Trifolium pratense HOM05D004744 ORTHO05D005655 5.6e-145 518.8 620 49.2
Hund06750 Selenicereus undatus HOM05D004744 ORTHO05D005655 2.4e-143 513.5 655 44.9
TPR.G21273 Trifolium pratense HOM05D004744 ORTHO05D005655 1.5e-137 494.2 583 49.2
Eucgr.C01625 Eucalyptus grandis HOM05D004744 ORTHO05D005655 1.9e-129 467.2 392 58.7
Zm00001eb257970 Zea mays HOM05D004744 ORTHO05D005655 7.6e-118 428.7 474 49.2
Peaxi162Scf00116g00091 Petunia axillaris HOM05D004744 ORTHO05D005655 5.6e-113 412.5 360 57.8
Pp3c12_9830 Physcomitrium patens HOM05D004744 ORTHO05D005655 5.3e-95 352.8 634 34.1
Mapoly0033s0067 Marchantia polymorpha HOM05D004744 ORTHO05D005655 2.0e-94 350.9 628 33.8
TPR.G18367 Trifolium pratense HOM05D004744 ORTHO05D005655 2.0e-89 334.3 375 51.5
unitig_0.g2772 Utricularia gibba HOM05D004744 ORTHO05D005655 2.7e-83 313.9 629 32.8
C07p37210 Brassica napus HOM05D004744 ORTHO05D005655 1.1e-79 302.0 515 39.4
BolC7t44231H Brassica oleracea HOM05D004744 ORTHO05D005655 1.1e-79 302.0 515 39.4
SMO134G0198 Selaginella moellendorffii HOM05D004744 ORTHO05D005655 2.4e-79 300.8 618 31.7
AagrBONN_evm.TU.Sc2ySwM_117.465 Anthoceros agrestis HOM05D004744 ORTHO05D005655 5.3e-79 299.7 513 34.9
BcaC06g33762 Brassica carinata HOM05D004744 ORTHO05D005655 3.0e-74 283.9 379 44.9
vmacro12150 Vaccinium macrocarpon HOM05D000172 ORTHO05D000781 4.1e-71 273.5 373 45.8
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 1.4e-63 248.4 261 50.6
BraA06t26993Z Brassica rapa HOM05D004744 ORTHO05D005655 5.6e-52 209.9 272 44.5
A06p40720 Brassica napus HOM05D004744 ORTHO05D005655 4.7e-51 206.8 272 44.1
Ah.14g079380 Amaranthus hybridus HOM05D004744 ORTHO05D005655 2.6e-49 201.1 195 52.3
CBR_g34813 Chara braunii HOM05D004744 ORTHO05D005655 1.7e-40 171.8 387 28.7
FAN14G1088 Fragaria x ananassa HOM05D004744 ORTHO05D005655 6.0e-38 163.3 401 33.9
PGSC0003DMG400015627 Solanum tuberosum HOM05D004744 ORTHO05D005655 1.0e-37 162.5 150 54.0
BolC8t47068H Brassica oleracea HOM05D004744 ORTHO05D005655 1.3e-37 162.2 163 50.9
C08p49950 Brassica napus HOM05D004744 ORTHO05D005655 1.7e-37 161.8 226 41.6
DCAR_000575 Daucus carota HOM05D004744 ORTHO05D005655 1.5e-36 158.7 133 62.4
FAN09G4690 Fragaria x ananassa HOM05D004744 ORTHO05D005655 4.3e-36 157.1 365 34.8
FvH4_6g32120 Fragaria vesca HOM05D004744 ORTHO05D005655 1.2e-35 155.6 553 30.2
BcaC06g30944 Brassica carinata HOM05D004744 ORTHO05D005655 1.6e-35 155.2 163 50.3
GSVIVG01011258001 Vitis vinifera HOM05D004744 ORTHO05D005655 6.2e-35 153.3 130 61.5
DCAR_000580 Daucus carota HOM05D004744 ORTHO05D005655 5.4e-31 140.2 170 41.2
SEGI_40333 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 3.5e-30 137.5 142 48.6
BcaC07g41939 Brassica carinata HOM05D004744 ORTHO05D005655 6.6e-29 133.3 226 38.9
Ah.14g079390 Amaranthus hybridus HOM05D004744 ORTHO05D005655 2.5e-28 131.3 222 36.5
Pp3c4_13414 Physcomitrium patens HOM05D004744 ORTHO05D005655 1.6e-27 128.6 331 29.9
COL.COLO4_18909 Corchorus olitorius HOM05D004744 ORTHO05D005655 5.8e-25 120.2 82 72.0
Cpa.g.sc187.23 Carica papaya HOM05D004744 ORTHO05D005655 2.2e-24 118.2 89 64.0
DCAR_000578 Daucus carota HOM05D004744 ORTHO05D005655 1.3e-19 102.4 122 44.3
SEGI_39231 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 2.1e-19 101.7 149 39.6
Eucgr.L02780 Eucalyptus grandis HOM05D004744 ORTHO05D005655 2.4e-18 98.2 60 78.3
SHI18506 Sapria himalayana HOM05D004744 ORTHO05D005655 8.4e-16 89.7 61 68.9
SHI18507 Sapria himalayana HOM05D004744 ORTHO05D005655 6.0e-14 83.6 81 54.3
SEGI_08303 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 1.5e-12 79.0 69 52.2
FAN15G0776 Fragaria x ananassa HOM05D004744 ORTHO05D005655 8.1e-11 73.2 37 94.6
TWI63G1552 Tripterygium wilfordii HOM05D004744 ORTHO05D005655 1.1e-10 72.8 92 44.6
Dinv18155 Davidia involucrata HOM05D004744 ORTHO05D005655 3.1e-10 71.2 40 82.5
C08p02720 Brassica napus HOM05D004744 ORTHO05D005655 4.0e-10 70.9 77 42.9
unitig_748.g7861 Utricularia gibba HOM05D004744 ORTHO05D005655 2.6e-09 68.2 74 48.6
Cre07.g323650 Chlamydomonas reinhardtii HOM05D004744 ORTHO05D005655 3.8e-08 64.3 109 33.9
CsaV3_4G016180 Cucumis sativus L. HOM05D004744 ORTHO05D005655 1.4e-07 62.4 44 68.2
BcaC06g36552 Brassica carinata HOM05D016909 ORTHO05D027203 4.2e-07 60.8 138 34.8
SEGI_21256 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 7.1e-07 60.1 75 41.3
C07p02990 Brassica napus HOM05D016909 ORTHO05D027203 9.3e-07 59.7 142 35.2
unitig_60.g25872 Utricularia gibba HOM05D004744 ORTHO05D005655 6.0e-06 57.0 48 54.2


User provided reference genes

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