Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g28060 Fragaria vesca HOM05D006959 ORTHO05D008808 3.2e-119 431.8 219 100.0
FAN24G0315 Fragaria x ananassa HOM05D006959 ORTHO05D008808 3.5e-118 428.3 219 98.6
FAN27G3284 Fragaria x ananassa HOM05D006959 ORTHO05D008808 1.2e-115 419.9 219 97.3
FAN20G3215 Fragaria x ananassa HOM05D006959 ORTHO05D008808 1.2e-105 386.7 219 91.3
RcHm_v2.0_Chr6g0297021 Rosa chinensis HOM05D006959 ORTHO05D008808 9.2e-95 350.5 224 84.8
MD15G1131600 Malus domestica HOM05D006959 ORTHO05D008808 1.7e-77 293.1 214 72.0
Cfa018414 Carpinus fangiana HOM05D006959 ORTHO05D008808 7.1e-71 271.2 217 65.4
Manes.18G084200 Manihot esculenta HOM05D006959 ORTHO05D008808 3.5e-70 268.9 221 65.6
CiPaw.16G022000 Carya illinoinensis HOM05D006959 ORTHO05D008808 5.1e-69 265.0 216 63.4
Haze_17647 Corylus avellana HOM05D006959 ORTHO05D008808 6.9e-66 254.6 232 60.8
Hma1.2p1_0159F.1_g070330 Hydrangea macrophylla HOM05D006959 ORTHO05D008808 9.0e-66 254.2 218 61.0
QL09p031824 Quercus lobata HOM05D006959 ORTHO05D008808 1.3e-64 250.4 218 62.8
QL09p031413 Quercus lobata HOM05D006959 ORTHO05D008808 1.7e-64 250.0 217 63.1
Thecc.08G134700 Theobroma cacao HOM05D006959 ORTHO05D008808 2.2e-64 249.6 223 61.0
Potri.002G076700 Populus trichocarpa HOM05D006959 ORTHO05D008808 3.8e-64 248.8 219 61.2
PGR042G0886 Punica granatum HOM05D006959 ORTHO05D008808 3.8e-64 248.8 227 60.8
Atru.chr13.1599 Acer truncatum HOM05D006959 ORTHO05D008808 4.9e-64 248.4 219 63.0
Duzib093G2176 Durio zibethinus HOM05D006959 ORTHO05D008808 4.9e-64 248.4 224 63.8
TWI32G1355 Tripterygium wilfordii HOM05D006959 ORTHO05D008808 6.5e-64 248.1 218 62.4
TAR381G0659 Trochodendron aralioides HOM05D006959 ORTHO05D008808 1.9e-63 246.5 221 61.5
Gohir.A05G238900 Gossypium hirsutum HOM05D006959 ORTHO05D008808 2.5e-63 246.1 222 59.5
Gohir.D05G240800 Gossypium hirsutum HOM05D006959 ORTHO05D008808 2.7e-62 242.7 222 59.0
Gorai.009G249600 Gossypium raimondii HOM05D006959 ORTHO05D008808 2.7e-62 242.7 222 59.0
Cpa.g.sc64.158 Carica papaya HOM05D006959 ORTHO05D008808 3.5e-62 242.3 218 61.0
Glyma.13G035500 Glycine max HOM05D006959 ORTHO05D008808 6.0e-62 241.5 213 60.1
Sed0020251 Sechium edule HOM05D006959 ORTHO05D008808 1.8e-61 240.0 217 59.0
Lj4A666T17 Lonicera japonica HOM05D006959 ORTHO05D008808 2.3e-61 239.6 220 60.9
Oeu026374.1 Olea europaea HOM05D006959 ORTHO05D008808 2.3e-61 239.6 215 59.5
THA.LOC104813687 Tarenaya hassleriana HOM05D006959 ORTHO05D008808 3.0e-61 239.2 219 58.4
Ciclev10002542m.g Citrus clementina HOM05D006959 ORTHO05D008808 3.9e-61 238.8 218 61.0
CsaV3_6G033990 Cucumis sativus L. HOM05D006959 ORTHO05D008808 5.1e-61 238.4 220 59.1
Eucgr.F03861 Eucalyptus grandis HOM05D006959 ORTHO05D008808 6.7e-61 238.0 218 59.2
Nn1g08935 Nelumbo nucifera HOM05D006959 ORTHO05D008808 6.7e-61 238.0 220 59.5
Lj4A663T33 Lonicera japonica HOM05D006959 ORTHO05D008808 4.3e-60 235.3 216 61.1
PGSC0003DMG402018005 Solanum tuberosum HOM05D006959 ORTHO05D008808 4.3e-60 235.3 221 57.5
PGSC0003DMG403018005 Solanum tuberosum HOM05D006959 ORTHO05D008808 5.7e-60 235.0 221 57.5
VMungo0647G0259 Vigna mungo HOM05D006959 ORTHO05D008808 9.6e-60 234.2 213 57.7
MELO3C008461.2 Cucumis melo HOM05D006959 ORTHO05D008808 1.3e-59 233.8 232 56.9
Phvul.001G066600 Phaseolus vulgaris HOM05D006959 ORTHO05D008808 2.8e-59 232.6 214 57.5
COL.COLO4_32963 Corchorus olitorius HOM05D006959 ORTHO05D008808 3.7e-59 232.3 219 58.9
Migut.C01073 Erythranthe guttata HOM05D006959 ORTHO05D008808 1.1e-58 230.7 221 57.5
Sopen04g026100 Solanum pennellii HOM05D006959 ORTHO05D008808 1.8e-58 229.9 220 56.4
GSVIVG01008793001 Vitis vinifera HOM05D006959 ORTHO05D008808 9.0e-58 227.6 151 74.2
ClCG08G006070 Citrullus lanatus HOM05D006959 ORTHO05D008808 2.0e-57 226.5 254 51.6
Actinidia24726 Actinidia chinensis HOM05D006959 ORTHO05D008808 5.9e-57 224.9 186 64.5
Lsat_1_v5_gn_1_10340 Lactuca sativa HOM05D006959 ORTHO05D008808 1.7e-56 223.4 217 57.6
Peaxi162Scf00066g00072 Petunia axillaris HOM05D006959 ORTHO05D008808 5.0e-56 221.9 219 55.3
Cc10_g14010 Coffea canephora HOM05D006959 ORTHO05D008808 8.5e-56 221.1 216 57.4
HanXRQChr02g0045531 Helianthus annuus HOM05D006959 ORTHO05D008808 2.5e-55 219.5 213 55.4
arahy.Tifrunner.gnm1.ann1.P1MCWD Arachis hypogaea HOM05D006959 ORTHO05D008808 7.2e-55 218.0 214 57.0
CAN.G46.11 Capsicum annuum HOM05D006959 ORTHO05D008808 7.2e-55 218.0 217 55.3
Nitab4.5_0002625g0010 Nicotiana tabacum HOM05D006959 ORTHO05D008808 2.1e-54 216.5 218 55.5
MSTRG.1406 Avicennia marina HOM05D006959 ORTHO05D008808 2.7e-54 216.1 220 54.1
Sp5g32400 Schrenkiella parvula HOM05D006959 ORTHO05D008808 1.0e-53 214.2 217 53.0
CANSAT64G0796 Cannabis sativa HOM05D006959 ORTHO05D008808 3.0e-53 212.6 219 56.2
MBI03_g13506_MAGBIO Magnolia biondii HOM05D006959 ORTHO05D008808 3.9e-53 212.2 230 53.9
Aqoxy6G00289 Aquilegia oxysepala HOM05D006959 ORTHO05D008808 5.1e-53 211.8 219 56.2
Hund17359 Selenicereus undatus HOM05D006959 ORTHO05D008808 5.1e-53 211.8 213 55.9
Thhalv10019109m.g Eutrema salsugineum HOM05D006959 ORTHO05D008808 1.1e-52 210.7 219 53.9
AUR62007695 Chenopodium quinoa HOM05D006959 ORTHO05D008808 2.5e-52 209.5 227 51.5
Actinidia15201 Actinidia chinensis HOM05D006959 ORTHO05D008808 9.7e-52 207.6 221 52.9
AUR62013448 Chenopodium quinoa HOM05D006959 ORTHO05D008808 9.7e-52 207.6 227 51.1
AL2G37400 Arabidopsis lyrata HOM05D006959 ORTHO05D008808 2.2e-51 206.5 216 53.2
Nitab4.5_0008327g0010 Nicotiana tabacum HOM05D006959 ORTHO05D008808 2.8e-51 206.1 239 50.6
CARHR070700 Cardamine hirsuta HOM05D006959 ORTHO05D008808 3.7e-51 205.7 213 51.6
Lj1g0023549 Lotus japonicus HOM05D006959 ORTHO05D008808 4.8e-51 205.3 216 56.0
CDE06G1932 Ceratophyllum demersum HOM05D006959 ORTHO05D008808 1.1e-50 204.1 206 54.9
Sabra02G0060200 Salix brachista HOM05D006959 ORTHO05D008808 1.1e-50 204.1 291 46.0
PSO170G0856 Papaver somniferum HOM05D006959 ORTHO05D008808 1.4e-50 203.8 225 52.9
AT1G77230 Arabidopsis thaliana HOM05D006959 ORTHO05D008808 3.1e-50 202.6 219 50.7
SalBow7G4180 Salvia bowleyana HOM05D006959 ORTHO05D008808 6.9e-50 201.4 246 48.8
PSO528G0249 Papaver somniferum HOM05D006959 ORTHO05D008808 9.1e-50 201.1 228 53.1
Zm00001eb181980 Zea mays HOM05D006959 ORTHO05D008808 1.5e-49 200.3 214 51.9
Carub.0002s2410 Capsella rubella HOM05D006959 ORTHO05D008808 2.0e-49 199.9 214 50.9
Hma1.2p1_0159F.1_g070340 Hydrangea macrophylla HOM05D006959 ORTHO05D008808 2.0e-49 199.9 207 54.6
CSS0019542 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 5.0e-48 195.3 221 52.9
Os02g0553500 Oryza sativa ssp. japonica HOM05D006959 ORTHO05D008808 8.5e-48 194.5 217 49.3
BcaC08g45484 Brassica carinata HOM05D006959 ORTHO05D008808 1.1e-47 194.1 213 49.3
arahy.Tifrunner.gnm1.ann1.84IAJ5 Arachis hypogaea HOM05D006959 ORTHO05D008808 2.5e-47 193.0 125 76.8
Medtr1g029720 Medicago truncatula HOM05D006959 ORTHO05D008808 4.2e-47 192.2 214 50.0
HPP92_016131 Vanilla planifolia HOM05D006959 ORTHO05D008808 4.2e-47 192.2 218 50.0
Lalb_Chr04g0253591 Lupinus albus HOM05D006959 ORTHO05D008808 9.4e-47 191.0 213 54.0
EL10Ac1g01371 Beta vulgaris HOM05D006959 ORTHO05D008808 1.8e-45 186.8 248 46.4
C06p31380 Brassica napus HOM05D006959 ORTHO05D008808 1.8e-45 186.8 213 49.3
Prupe.1G487500 Prunus persica HOM05D006959 ORTHO05D008808 2.3e-45 186.4 213 51.6
A08p07140 Brassica napus HOM05D006959 ORTHO05D008808 3.9e-45 185.7 213 47.9
BraA08t32726Z Brassica rapa HOM05D006959 ORTHO05D008808 3.9e-45 185.7 213 47.9
BolC6t38274H Brassica oleracea HOM05D006959 ORTHO05D008808 5.1e-45 185.3 213 49.3
Aa31LG4G7230 Aethionema arabicum HOM05D006959 ORTHO05D008808 8.8e-45 184.5 237 46.4
Glyma.14G156700 Glycine max HOM05D006959 ORTHO05D008808 2.2e-43 179.9 216 47.7
ATR0584G163 Amborella trichopoda HOM05D006959 ORTHO05D008808 1.2e-41 174.1 153 56.2
BcaB02g07099 Brassica carinata HOM05D006959 ORTHO05D008808 5.0e-40 168.7 223 42.6
Ca_12642_v3 Cicer arietinum L. HOM05D006959 ORTHO05D008808 1.1e-39 167.5 232 46.1
Solyc04g058200.3 Solanum lycopersicum HOM05D006959 ORTHO05D008808 2.1e-38 163.3 114 67.5
FAN27G2285 Fragaria x ananassa HOM05D006959 ORTHO05D008808 3.6e-38 162.5 112 77.7
Dinv27258 Davidia involucrata HOM05D006959 ORTHO05D008808 1.6e-33 147.1 125 63.2
RcHm_v2.0_Chr6g0296961 Rosa chinensis HOM05D006959 ORTHO05D008808 5.0e-32 142.1 75 93.3
DCAR_028201 Daucus carota HOM05D006959 ORTHO05D008808 6.5e-32 141.7 218 43.1
Psat6g040840 Pisum sativum HOM05D006959 ORTHO05D008808 5.5e-31 138.7 157 54.1
TPR.G879 Trifolium pratense HOM05D006959 ORTHO05D008808 6.7e-29 131.7 84 73.8
CSS0009415 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 8.5e-24 114.8 147 51.0
CSS0036249 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 1.9e-23 113.6 147 49.7
SGA_v2.0_scaffold52G18911 Striga asiatica HOM05D006959 ORTHO05D008808 8.8e-21 104.8 141 48.9
RcHm_v2.0_Chr6g0296981 Rosa chinensis HOM05D006959 ORTHO05D008808 4.8e-19 99.0 55 92.7
Sc26g0002850 Simmondsia chinensis HOM05D006959 ORTHO05D008808 4.8e-19 99.0 70 65.7
Mapoly0050s0106 Marchantia polymorpha HOM05D006959 ORTHO05D008808 8.3e-19 98.2 155 40.6
Cre12.g510034 Chlamydomonas reinhardtii HOM05D006959 ORTHO05D008808 5.9e-17 92.0 104 47.1
SEGI_05118 Sequoiadendron giganteum HOM05D006959 ORTHO05D008808 1.0e-16 91.3 82 51.2
SEGI_04582 Sequoiadendron giganteum HOM05D006959 ORTHO05D008808 6.5e-16 88.6 82 50.0
FAN24G1784 Fragaria x ananassa HOM05D006959 ORTHO05D008808 3.2e-15 86.3 47 87.2
Carub.0006s2688 Capsella rubella HOM05D005920 ORTHO05D007211 3.8e-08 62.8 159 28.9
CARHR259410 Cardamine hirsuta HOM05D005920 ORTHO05D007211 8.6e-08 61.6 173 29.5
Phvul.008G125199 Phaseolus vulgaris HOM05D003946 ORTHO05D004485 1.1e-07 61.2 107 32.7
VMungo1383G2940 Vigna mungo HOM05D003946 ORTHO05D004485 1.1e-07 61.2 107 32.7
Os02g0644100 Oryza sativa ssp. japonica HOM05D002462 ORTHO05D002893 2.5e-07 60.1 99 31.3
TPR.G23301 Trifolium pratense HOM05D003946 ORTHO05D004485 2.5e-07 60.1 142 31.0
Medtr7g059150 Medicago truncatula HOM05D003946 ORTHO05D004485 4.3e-07 59.3 106 34.9
AL6G42090 Arabidopsis lyrata HOM05D005920 ORTHO05D007211 5.6e-07 58.9 172 26.7
arahy.Tifrunner.gnm1.ann1.5R3BA8 Arachis hypogaea HOM05D003946 ORTHO05D004485 5.6e-07 58.9 128 30.5
Lj4g0012280 Lotus japonicus HOM05D003946 ORTHO05D004485 5.6e-07 58.9 109 33.9
Zm00001eb248730 Zea mays HOM05D002462 ORTHO05D002893 5.6e-07 58.9 99 30.3
Sp6g09620 Schrenkiella parvula HOM05D005920 ORTHO05D007211 7.3e-07 58.5 163 27.6
arahy.Tifrunner.gnm1.ann1.8RX8VY Arachis hypogaea HOM05D003946 ORTHO05D004485 1.2e-06 57.8 128 30.5
Lalb_Chr07g0193951 Lupinus albus HOM05D003946 ORTHO05D004485 1.2e-06 57.8 129 31.0
BcaB05g23941 Brassica carinata HOM05D005920 ORTHO05D007211 1.6e-06 57.4 159 28.3
AT4G08320 Arabidopsis thaliana HOM05D005920 ORTHO05D007211 2.1e-06 57.0 159 27.7
Thhalv10028662m.g Eutrema salsugineum HOM05D005920 ORTHO05D007211 2.8e-06 56.6 167 27.5
FAN08G3479 Fragaria x ananassa HOM05D006959 ORTHO05D008808 2.8e-06 56.6 64 56.2
CBR_g52628 Chara braunii HOM05D006959 ORTHO05D008808 3.6e-06 56.2 153 30.1
BcaC03g16447 Brassica carinata HOM05D005920 ORTHO05D007211 4.7e-06 55.8 172 26.7
PGR001G0003 Punica granatum HOM05D003946 ORTHO05D004485 4.7e-06 55.8 162 25.9
PGR044G0462 Punica granatum HOM05D003946 ORTHO05D004485 4.7e-06 55.8 162 25.9
Dinv41322 Davidia involucrata HOM05D003946 ORTHO05D004485 6.1e-06 55.5 114 32.5
FAN04G1857 Fragaria x ananassa HOM05D006959 ORTHO05D008808 6.1e-06 55.5 50 66.0
C02p42670 Brassica napus HOM05D005920 ORTHO05D007211 8.0e-06 55.1 173 26.6
BolSC33t60638H Brassica oleracea HOM05D005920 ORTHO05D007211 8.0e-06 55.1 173 26.6
Haze_17648 Corylus avellana HOM05D006959 ORTHO05D008808 8.0e-06 55.1 92 42.4


User provided reference genes

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