Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g27320 Fragaria vesca HOM05D014919 ORTHO05D029631 3.3e-173 611.7 330 100.0
FAN24G0449 Fragaria x ananassa HOM05D014919 ORTHO05D029631 1.7e-172 609.4 330 99.7
FAN15G2844 Fragaria x ananassa HOM05D014919 ORTHO05D029631 1.3e-164 583.2 331 95.8
RcHm_v2.0_Chr6g0296141 Rosa chinensis HOM05D014919 ORTHO05D010311 2.4e-62 243.4 163 73.6
RcHm_v2.0_Chr6g0296131 Rosa chinensis HOM05D021820 ORTHO05D029631 3.8e-52 209.5 127 83.5
FvH4_2g27330 Fragaria vesca HOM05D014919 ORTHO05D035675 1.6e-45 187.6 336 38.1
FAN24G3544 Fragaria x ananassa HOM05D014919 ORTHO05D035675 1.1e-38 164.9 288 38.9
FAN15G0412 Fragaria x ananassa HOM05D014919 ORTHO05D035675 8.0e-34 148.7 270 37.8
Prupe.7G138400 Prunus persica HOM05D000046 ORTHO05D025806 2.6e-32 143.7 344 31.7
MD02G1021700 Malus domestica HOM05D000041 ORTHO05D001532 1.7e-28 131.0 332 32.2
Prupe.5G127900 Prunus persica HOM05D000529 ORTHO05D012517 5.0e-28 129.4 340 31.2
RcHm_v2.0_Chr2g0104561 Rosa chinensis HOM05D000046 ORTHO05D025806 8.6e-28 128.6 340 31.8
MD02G1022000 Malus domestica HOM05D008495 ORTHO05D025806 1.1e-27 128.3 335 31.3
MD06G1115200 Malus domestica HOM05D000081 ORTHO05D000036 7.3e-27 125.6 340 31.2
MD15G1278700 Malus domestica HOM05D000046 ORTHO05D025806 2.6e-24 117.1 343 28.6
MD06G1115400 Malus domestica HOM05D000529 ORTHO05D025806 2.2e-23 114.0 340 29.4
RcHm_v2.0_Chr7g0186691 Rosa chinensis HOM05D000529 ORTHO05D012517 4.9e-23 112.8 324 31.5
FAN27G1775 Fragaria x ananassa HOM05D014919 ORTHO05D200806 3.5e-21 106.7 178 38.8
RcHm_v2.0_Chr7g0186631 Rosa chinensis HOM05D008495 ORTHO05D017958 5.1e-20 102.8 324 30.2
FAN20G0530 Fragaria x ananassa HOM05D014919 ORTHO05D207590 3.6e-18 96.7 227 33.5
FAN08G3301 Fragaria x ananassa HOM05D000248 ORTHO05D017958 4.7e-18 96.3 333 26.1
FAN28G0579 Fragaria x ananassa HOM05D008495 ORTHO05D010311 1.8e-17 94.4 268 27.2
FAN13G0180 Fragaria x ananassa HOM05D000248 ORTHO05D000146 2.3e-17 94.0 336 29.8
FAN13G2559 Fragaria x ananassa HOM05D000248 ORTHO05D000146 2.3e-17 94.0 336 29.8
FAN13G3219 Fragaria x ananassa HOM05D000248 ORTHO05D000146 2.3e-17 94.0 336 29.8
FAN13G1884 Fragaria x ananassa HOM05D000248 ORTHO05D000146 3.1e-17 93.6 324 29.6
FAN13G1491 Fragaria x ananassa HOM05D000248 ORTHO05D000146 5.2e-17 92.8 324 29.6
FAN13G1701 Fragaria x ananassa HOM05D000248 ORTHO05D000146 5.2e-17 92.8 324 29.6
FAN13G2246 Fragaria x ananassa HOM05D000248 ORTHO05D000146 5.2e-17 92.8 336 29.5
FAN13G2794 Fragaria x ananassa HOM05D000248 ORTHO05D000146 5.2e-17 92.8 324 29.6
FAN13G3019 Fragaria x ananassa HOM05D000248 ORTHO05D000146 5.2e-17 92.8 324 29.6
FvH4_1g15330 Fragaria vesca HOM05D000529 ORTHO05D000472 1.2e-16 91.7 336 26.8
FvH4_5g11210 Fragaria vesca HOM05D000248 ORTHO05D000146 1.5e-16 91.3 329 27.1
FvH4_7g12080 Fragaria vesca HOM05D021820 ORTHO05D025535 1.5e-16 91.3 142 42.3
FAN06G4887 Fragaria x ananassa HOM05D021820 ORTHO05D025535 1.5e-16 91.3 142 42.3
FAN10G3811 Fragaria x ananassa HOM05D021820 ORTHO05D025535 1.5e-16 91.3 142 42.3
FAN26G0747 Fragaria x ananassa HOM05D001563 ORTHO05D000761 2.0e-16 90.9 322 27.3
FvH4_5g11250 Fragaria vesca HOM05D000306 ORTHO05D025348 3.4e-16 90.1 327 26.9
FAN06G2372 Fragaria x ananassa HOM05D021820 ORTHO05D025535 3.4e-16 90.1 142 41.5
FAN10G3193 Fragaria x ananassa HOM05D021820 ORTHO05D025535 7.6e-16 89.0 142 41.5
FAN18G3041 Fragaria x ananassa HOM05D000083 ORTHO05D025348 7.6e-16 89.0 326 26.1
FvH4_5g11100 Fragaria vesca HOM05D000248 ORTHO05D000146 1.3e-15 88.2 334 27.2
FAN18G0367 Fragaria x ananassa HOM05D000083 ORTHO05D025348 1.7e-15 87.8 326 25.8
RcHm_v2.0_Chr2g0102741 Rosa chinensis HOM05D001084 ORTHO05D001275 2.9e-15 87.0 348 28.2
FvH4_5g11120 Fragaria vesca HOM05D000248 ORTHO05D017958 3.7e-15 86.7 306 26.1
FvH4_5g11230 Fragaria vesca HOM05D000248 ORTHO05D017958 3.7e-15 86.7 306 26.1
FAN18G1596 Fragaria x ananassa HOM05D000248 ORTHO05D017958 4.9e-15 86.3 333 26.1
FAN26G0958 Fragaria x ananassa HOM05D000529 ORTHO05D000472 4.9e-15 86.3 322 25.8
FvH4_5g11200 Fragaria vesca HOM05D000248 ORTHO05D017958 6.4e-15 85.9 304 25.3
FAN13G2602 Fragaria x ananassa HOM05D000248 ORTHO05D017958 6.4e-15 85.9 305 27.2
FAN18G1889 Fragaria x ananassa HOM05D000529 ORTHO05D010311 1.4e-14 84.7 304 26.6
FAN18G3118 Fragaria x ananassa HOM05D000248 ORTHO05D000146 1.9e-14 84.3 333 26.1
FAN18G4033 Fragaria x ananassa HOM05D000248 ORTHO05D017958 1.9e-14 84.3 303 26.4
FAN04G0459 Fragaria x ananassa HOM05D000529 ORTHO05D010311 3.2e-14 83.6 304 26.3
FAN13G2367 Fragaria x ananassa HOM05D000248 ORTHO05D000146 5.4e-14 82.8 340 27.6
RcHm_v2.0_Chr2g0104741 Rosa chinensis HOM05D000529 ORTHO05D000472 5.4e-14 82.8 335 25.7
FAN19G2660 Fragaria x ananassa HOM05D000529 ORTHO05D000472 1.2e-13 81.6 305 25.6
FvH4_7g14830 Fragaria vesca HOM05D000166 ORTHO05D001532 2.7e-13 80.5 279 26.2
RcHm_v2.0_Chr2g0104731 Rosa chinensis HOM05D000577 ORTHO05D003509 4.6e-13 79.7 330 26.7
MD06G1116000 Malus domestica HOM05D000054 ORTHO05D000286 1.7e-12 77.8 106 44.3
FAN02G0225 Fragaria x ananassa HOM05D008495 ORTHO05D010311 1.1e-11 75.1 139 36.0
FAN06G0627 Fragaria x ananassa HOM05D000166 ORTHO05D001532 2.5e-11 73.9 143 31.5
FvH4_5g11220 Fragaria vesca HOM05D000248 ORTHO05D017958 4.3e-11 73.2 245 26.5
RcHm_v2.0_Chr2g0104171 Rosa chinensis HOM05D000529 ORTHO05D000472 7.3e-11 72.4 148 31.1
FvH4_1g13670 Fragaria vesca HOM05D008495 ORTHO05D012517 9.6e-11 72.0 321 25.5
FvH4_4g36760 Fragaria vesca HOM05D068228 ORTHO05D045467 1.2e-10 71.6 251 31.5
Prupe.5G127700 Prunus persica HOM05D000529 ORTHO05D010311 1.2e-10 71.6 134 34.3
FAN27G2068 Fragaria x ananassa HOM05D014919 ORTHO05D207760 2.1e-10 70.9 79 45.6
RcHm_v2.0_Chr2g0104831 Rosa chinensis HOM05D000083 ORTHO05D002708 2.1e-10 70.9 136 34.6
RcHm_v2.0_Chr1g0373981 Rosa chinensis HOM05D000614 ORTHO05D000463 2.8e-10 70.5 269 27.1
RcHm_v2.0_Chr2g0104181 Rosa chinensis HOM05D000529 ORTHO05D000472 2.8e-10 70.5 148 27.7
FvH4_1g15120 Fragaria vesca HOM05D000529 ORTHO05D000472 4.7e-10 69.7 133 32.3
RcHm_v2.0_Chr2g0104611 Rosa chinensis HOM05D000046 ORTHO05D000472 1.1e-09 68.6 147 32.7
FAN26G3207 Fragaria x ananassa HOM05D000529 ORTHO05D000472 2.4e-09 67.4 130 30.8
FvH4_1g13660 Fragaria vesca HOM05D001084 ORTHO05D001275 4.0e-09 66.6 135 36.3
RcHm_v2.0_Chr7g0186641 Rosa chinensis HOM05D000248 ORTHO05D000146 6.8e-09 65.9 343 25.7
FvH4_1g15500 Fragaria vesca HOM05D000529 ORTHO05D000472 1.2e-08 65.1 147 32.7
RcHm_v2.0_Chr2g0104381 Rosa chinensis HOM05D000529 ORTHO05D000472 1.2e-08 65.1 127 30.7
RcHm_v2.0_Chr2g0104191 Rosa chinensis HOM05D000529 ORTHO05D000472 1.5e-08 64.7 151 30.5
RcHm_v2.0_Chr2g0143661 Rosa chinensis HOM05D003771 ORTHO05D010311 1.5e-08 64.7 139 28.1
FAN08G3343 Fragaria x ananassa HOM05D000529 ORTHO05D010311 2.0e-08 64.3 122 32.8
FAN23G2757 Fragaria x ananassa HOM05D000529 ORTHO05D010311 2.0e-08 64.3 114 31.6
FAN23G2222 Fragaria x ananassa HOM05D000529 ORTHO05D000472 2.6e-08 63.9 110 35.5
RcHm_v2.0_Chr2g0102961 Rosa chinensis HOM05D000046 ORTHO05D020739 2.6e-08 63.9 125 36.0
FvH4_5g11180 Fragaria vesca HOM05D000248 ORTHO05D010311 3.4e-08 63.5 108 36.1
FvH4_7g26420 Fragaria vesca HOM05D008495 ORTHO05D046041 3.4e-08 63.5 135 31.9
RcHm_v2.0_Chr3g0480561 Rosa chinensis HOM05D000529 ORTHO05D000472 3.4e-08 63.5 110 36.4
FAN26G1753 Fragaria x ananassa HOM05D000046 ORTHO05D020739 5.8e-08 62.8 125 34.4
RcHm_v2.0_Chr2g0104761 Rosa chinensis HOM05D000529 ORTHO05D000472 5.8e-08 62.8 128 32.0
FAN08G1641 Fragaria x ananassa HOM05D000083 ORTHO05D025348 7.6e-08 62.4 158 29.1
RcHm_v2.0_Chr7g0230551 Rosa chinensis HOM05D000529 ORTHO05D010311 7.6e-08 62.4 117 30.8
FvH4_5g32820 Fragaria vesca HOM05D000529 ORTHO05D010311 9.9e-08 62.0 122 32.0
FAN13G2049 Fragaria x ananassa HOM05D000306 ORTHO05D025348 9.9e-08 62.0 169 29.0
MD15G1277700 Malus domestica HOM05D000529 ORTHO05D000472 1.7e-07 61.2 136 30.9
RcHm_v2.0_Chr2g0104391 Rosa chinensis HOM05D000529 ORTHO05D000472 1.7e-07 61.2 110 35.5
FAN23G0006 Fragaria x ananassa HOM05D000529 ORTHO05D000472 2.2e-07 60.8 101 34.7
FAN28G0376 Fragaria x ananassa HOM05D000529 ORTHO05D000472 2.2e-07 60.8 110 34.5
FAN28G1580 Fragaria x ananassa HOM05D000529 ORTHO05D000472 2.2e-07 60.8 110 34.5
FAN06G3151 Fragaria x ananassa HOM05D008495 ORTHO05D046041 2.9e-07 60.5 127 32.3
FAN28G0545 Fragaria x ananassa HOM05D000529 ORTHO05D000472 3.8e-07 60.1 101 34.7
FAN28G0936 Fragaria x ananassa HOM05D000529 ORTHO05D000472 3.8e-07 60.1 101 34.7
MD02G1165600 Malus domestica HOM05D000529 ORTHO05D000472 3.8e-07 60.1 138 31.9
RcHm_v2.0_Chr3g0480541 Rosa chinensis HOM05D000529 ORTHO05D000472 3.8e-07 60.1 138 31.2
FvH4_1g15170 Fragaria vesca HOM05D000529 ORTHO05D000472 4.9e-07 59.7 138 31.2
FvH4_1g15230 Fragaria vesca HOM05D000529 ORTHO05D000472 4.9e-07 59.7 110 34.5
FAN19G2597 Fragaria x ananassa HOM05D000529 ORTHO05D000472 8.4e-07 58.9 110 33.6
FvH4_5g32830 Fragaria vesca HOM05D000529 ORTHO05D010311 1.4e-06 58.2 126 32.5
FAN18G1950 Fragaria x ananassa HOM05D000529 ORTHO05D010311 1.4e-06 58.2 126 32.5
MD02G1166100 Malus domestica HOM05D000529 ORTHO05D000472 1.9e-06 57.8 137 32.8
Prupe.7G138800 Prunus persica HOM05D000529 ORTHO05D000472 1.9e-06 57.8 135 30.4
FvH4_1g15130 Fragaria vesca HOM05D000529 ORTHO05D000472 3.2e-06 57.0 98 34.7
FAN06G0595 Fragaria x ananassa HOM05D000166 ORTHO05D001532 3.2e-06 57.0 206 26.7
FAN19G2633 Fragaria x ananassa HOM05D000529 ORTHO05D000472 3.2e-06 57.0 98 34.7
FAN23G0627 Fragaria x ananassa HOM05D000046 ORTHO05D020739 3.2e-06 57.0 120 33.3
RcHm_v2.0_Chr7g0186621 Rosa chinensis HOM05D000529 ORTHO05D000628 3.2e-06 57.0 228 25.4
FvH4_1g15160 Fragaria vesca HOM05D000529 ORTHO05D000472 7.1e-06 55.8 138 27.5
FAN19G2554 Fragaria x ananassa HOM05D000529 ORTHO05D000472 7.1e-06 55.8 138 27.5
Prupe.7G139700 Prunus persica HOM05D000529 ORTHO05D000472 7.1e-06 55.8 130 28.5
FvH4_5g03510 Fragaria vesca HOM05D008495 ORTHO05D029605 9.3e-06 55.5 135 28.9
FAN13G1363 Fragaria x ananassa HOM05D008495 ORTHO05D029605 9.3e-06 55.5 135 29.6
FAN13G2265 Fragaria x ananassa HOM05D008495 ORTHO05D029605 9.3e-06 55.5 135 29.6
FAN18G4342 Fragaria x ananassa HOM05D008495 ORTHO05D029605 9.3e-06 55.5 135 28.9
RcHm_v2.0_Chr2g0104121 Rosa chinensis HOM05D000529 ORTHO05D000472 9.3e-06 55.5 144 27.8
RcHm_v2.0_Chr2g0104431 Rosa chinensis HOM05D000529 ORTHO05D000472 9.3e-06 55.5 138 30.4


User provided reference genes

Program Settings