Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g27080 Fragaria vesca HOM05D006879 ORTHO05D008452 7.2e-59 230.3 113 100.0
FAN24G0949 Fragaria x ananassa HOM05D006879 ORTHO05D008452 2.7e-58 228.4 113 99.1
FAN20G0093 Fragaria x ananassa HOM05D006879 ORTHO05D008452 8.8e-57 223.4 113 95.6
RcHm_v2.0_Chr6g0295961 Rosa chinensis HOM05D006879 ORTHO05D008452 1.5e-51 206.1 113 91.2
FAN15G3590 Fragaria x ananassa HOM05D006879 ORTHO05D008452 9.4e-51 203.4 148 73.0
QL09p034330 Quercus lobata HOM05D006879 ORTHO05D008452 2.0e-45 185.7 110 76.4
QL09p034374 Quercus lobata HOM05D006879 ORTHO05D008452 2.0e-45 185.7 110 76.4
Prupe.1G494800 Prunus persica HOM05D006879 ORTHO05D008452 2.7e-45 185.3 112 82.1
Cfa016025 Carpinus fangiana HOM05D006879 ORTHO05D008452 1.0e-44 183.3 116 77.6
Haze_00431 Corylus avellana HOM05D000586 ORTHO05D008452 8.5e-44 180.3 101 83.2
CiPaw.06G031600 Carya illinoinensis HOM05D006879 ORTHO05D008452 3.2e-43 178.3 108 76.9
MELO3C010476.2 Cucumis melo HOM05D006879 ORTHO05D008452 1.6e-42 176.0 112 67.9
CsaV3_4G028290 Cucumis sativus L. HOM05D006879 ORTHO05D008452 2.7e-42 175.3 112 67.9
Manes.02G164300 Manihot esculenta HOM05D006879 ORTHO05D008452 2.7e-42 175.3 111 73.0
Ciclev10002899m.g Citrus clementina HOM05D006879 ORTHO05D008452 3.6e-42 174.9 99 78.8
Thecc.08G126700 Theobroma cacao HOM05D006879 ORTHO05D008452 1.4e-41 172.9 105 73.3
Dinv07211 Davidia involucrata HOM05D006879 ORTHO05D008452 8.8e-41 170.2 104 74.0
Sed0023358 Sechium edule HOM05D006879 ORTHO05D008452 1.5e-40 169.5 113 66.4
VMungo0647G0471 Vigna mungo HOM05D006879 ORTHO05D008452 1.5e-40 169.5 113 70.8
Atru.chr13.1490 Acer truncatum HOM05D006879 ORTHO05D008452 2.0e-40 169.1 102 77.5
Gohir.D01G180300 Gossypium hirsutum HOM05D006879 ORTHO05D008452 2.0e-40 169.1 110 70.0
CSS0011792 Camellia sinensis var. sinensis HOM05D006879 ORTHO05D008452 2.6e-40 168.7 110 70.0
Sc02g0005010 Simmondsia chinensis HOM05D006879 ORTHO05D008452 2.6e-40 168.7 112 69.6
Gohir.A01G189200 Gossypium hirsutum HOM05D006879 ORTHO05D008452 3.4e-40 168.3 110 69.1
ClCG11G015720 Citrullus lanatus HOM05D006879 ORTHO05D008452 4.4e-40 167.9 125 62.4
COL.COLO4_03398 Corchorus olitorius HOM05D006879 ORTHO05D008452 5.7e-40 167.5 117 67.5
Duzib041G0788 Durio zibethinus HOM05D006879 ORTHO05D008452 7.5e-40 167.2 113 68.1
Dinv27305 Davidia involucrata HOM05D006879 ORTHO05D008452 1.3e-39 166.4 110 70.0
Nn5g28321 Nelumbo nucifera HOM05D006879 ORTHO05D008452 1.7e-39 166.0 102 73.5
arahy.Tifrunner.gnm1.ann1.0SZ2NS Arachis hypogaea HOM05D006879 ORTHO05D008452 2.2e-39 165.6 98 74.5
arahy.Tifrunner.gnm1.ann1.61DA9N Arachis hypogaea HOM05D006879 ORTHO05D008452 2.2e-39 165.6 98 74.5
arahy.Tifrunner.gnm1.ann1.GV74HV Arachis hypogaea HOM05D006879 ORTHO05D008452 2.2e-39 165.6 98 74.5
Eucgr.F03793 Eucalyptus grandis HOM05D006879 ORTHO05D008452 2.2e-39 165.6 112 68.8
Hma1.2p1_0054F.1_g031040 Hydrangea macrophylla HOM05D006879 ORTHO05D008452 6.3e-39 164.1 111 70.3
Gorai.002G222300 Gossypium raimondii HOM05D006879 ORTHO05D008452 8.3e-39 163.7 110 67.3
Lsat_1_v5_gn_6_93360 Lactuca sativa HOM05D006879 ORTHO05D008452 8.3e-39 163.7 104 72.1
BcaB02g07111 Brassica carinata HOM05D006879 ORTHO05D008452 1.1e-38 163.3 113 69.9
Phvul.008G160300 Phaseolus vulgaris HOM05D006879 ORTHO05D008452 1.1e-38 163.3 105 72.4
MD15G1347100 Malus domestica HOM05D006879 ORTHO05D008452 1.4e-38 162.9 118 72.0
HanXRQChr03g0088981 Helianthus annuus HOM05D006879 ORTHO05D008452 1.8e-38 162.5 113 69.0
Aqoxy6G00233 Aquilegia oxysepala HOM05D006879 ORTHO05D008452 3.1e-38 161.8 106 69.8
Medtr3g088570 Medicago truncatula HOM05D006879 ORTHO05D008452 3.1e-38 161.8 103 71.8
Potri.005G178501 Populus trichocarpa HOM05D006879 ORTHO05D008452 7.0e-38 160.6 113 67.3
AL2G37750 Arabidopsis lyrata HOM05D006879 ORTHO05D008452 1.2e-37 159.8 99 75.8
BraA07t30441Z Brassica rapa HOM05D006879 ORTHO05D008452 1.6e-37 159.5 113 67.3
CAN.G21.5 Capsicum annuum HOM05D006879 ORTHO05D008452 1.6e-37 159.5 111 66.7
AT1G77540 Arabidopsis thaliana HOM05D006879 ORTHO05D008452 2.0e-37 159.1 99 74.7
Cc10_g12010 Coffea canephora HOM05D006879 ORTHO05D008452 2.0e-37 159.1 100 73.0
Aa31LG4G7630 Aethionema arabicum HOM05D006879 ORTHO05D008452 2.7e-37 158.7 110 65.5
CDE07G0981 Ceratophyllum demersum HOM05D006879 ORTHO05D008452 3.5e-37 158.3 103 70.9
A07p27940 Brassica napus HOM05D006879 ORTHO05D008452 4.5e-37 157.9 113 66.4
C06p31190 Brassica napus HOM05D006879 ORTHO05D008452 4.5e-37 157.9 113 67.3
Lj1g0005641 Lotus japonicus HOM05D006879 ORTHO05D008452 4.5e-37 157.9 99 70.7
PGR083G2398 Punica granatum HOM05D006879 ORTHO05D008452 4.5e-37 157.9 112 64.3
TWI32G0821 Tripterygium wilfordii HOM05D006879 ORTHO05D008452 4.5e-37 157.9 98 74.5
TAR628G0734 Trochodendron aralioides HOM05D006879 ORTHO05D008452 4.5e-37 157.9 96 71.9
BcaC08g45472 Brassica carinata HOM05D006879 ORTHO05D008452 5.9e-37 157.5 113 66.4
BolC6t38260H Brassica oleracea HOM05D006879 ORTHO05D008452 5.9e-37 157.5 113 66.4
Thhalv10019334m.g Eutrema salsugineum HOM05D006879 ORTHO05D008452 5.9e-37 157.5 100 76.0
Hund17297 Selenicereus undatus HOM05D006879 ORTHO05D008452 5.9e-37 157.5 106 67.0
Sp5g32720 Schrenkiella parvula HOM05D006879 ORTHO05D008452 7.7e-37 157.1 110 67.3
AUR62014329 Chenopodium quinoa HOM05D006879 ORTHO05D008452 2.2e-36 155.6 117 62.4
Lalb_Chr11g0066061 Lupinus albus HOM05D006879 ORTHO05D008452 2.2e-36 155.6 112 64.3
EL10Ac1g01022 Beta vulgaris HOM05D006879 ORTHO05D008452 2.9e-36 155.2 106 67.9
Solyc08g067800.3 Solanum lycopersicum HOM05D006879 ORTHO05D008452 2.9e-36 155.2 102 66.7
Sopen08g021740 Solanum pennellii HOM05D006879 ORTHO05D008452 2.9e-36 155.2 102 66.7
Carub.0002s2444 Capsella rubella HOM05D006879 ORTHO05D008452 3.8e-36 154.8 100 73.0
Glyma.14G151700 Glycine max HOM05D006879 ORTHO05D008452 3.8e-36 154.8 106 67.0
ECA240G3722 Erigeron canadensis HOM05D006879 ORTHO05D008452 5.0e-36 154.5 113 65.5
CANSAT56G2034 Cannabis sativa HOM05D006879 ORTHO05D008452 8.5e-36 153.7 113 64.6
Psat5g086200 Pisum sativum HOM05D006879 ORTHO05D008452 1.9e-35 152.5 104 67.3
ATR0584G146 Amborella trichopoda HOM05D006879 ORTHO05D008452 2.5e-35 152.1 94 74.5
BcaB07g32176 Brassica carinata HOM05D006879 ORTHO05D008452 3.2e-35 151.8 95 69.5
BolC5t30777H Brassica oleracea HOM05D006879 ORTHO05D008452 3.2e-35 151.8 95 69.5
Nitab4.5_0005583g0080 Nicotiana tabacum HOM05D006879 ORTHO05D008452 3.2e-35 151.8 113 65.5
BcaC05g26099 Brassica carinata HOM05D006879 ORTHO05D008452 4.2e-35 151.4 95 69.5
AUR62019072 Chenopodium quinoa HOM05D006879 ORTHO05D008452 7.2e-35 150.6 108 63.0
CARHR071070 Cardamine hirsuta HOM05D006879 ORTHO05D008452 9.5e-35 150.2 110 66.4
Ca_28182_v3 Cicer arietinum L. HOM05D006879 ORTHO05D008452 9.5e-35 150.2 97 71.1
PSO528G0112 Papaver somniferum HOM05D006879 ORTHO05D008452 1.6e-34 149.4 111 61.3
Nitab4.5_0004334g0040 Nicotiana tabacum HOM05D006879 ORTHO05D008452 2.1e-34 149.1 104 67.3
Actinidia03466 Actinidia chinensis HOM05D006879 ORTHO05D008452 2.8e-34 148.7 103 66.0
PSO170G0506 Papaver somniferum HOM05D006879 ORTHO05D008452 3.6e-34 148.3 111 63.1
A06p17880 Brassica napus HOM05D006879 ORTHO05D008452 6.1e-34 147.5 95 68.4
BraA06t24878Z Brassica rapa HOM05D006879 ORTHO05D008452 6.1e-34 147.5 95 68.4
Aa31LG7G5750 Aethionema arabicum HOM05D006879 ORTHO05D008452 8.0e-34 147.1 103 67.0
Thhalv10009164m.g Eutrema salsugineum HOM05D006879 ORTHO05D008452 8.0e-34 147.1 94 68.1
C05p20780 Brassica napus HOM05D006879 ORTHO05D008452 2.3e-33 145.6 95 68.4
Sp1g19330 Schrenkiella parvula HOM05D006879 ORTHO05D008452 3.0e-33 145.2 95 66.3
Carub.0001s2123 Capsella rubella HOM05D006879 ORTHO05D008452 5.2e-33 144.4 102 62.7
THA.LOC104813659 Tarenaya hassleriana HOM05D006879 ORTHO05D008452 5.2e-33 144.4 106 63.2
Migut.C01128 Erythranthe guttata HOM05D006879 ORTHO05D008452 1.5e-32 142.9 98 65.3
AL1G34970 Arabidopsis lyrata HOM05D006879 ORTHO05D008452 5.7e-32 141.0 98 62.2
MSTRG.25382 Avicennia marina HOM05D006879 ORTHO05D008452 9.8e-32 140.2 100 67.0
AT1G21770 Arabidopsis thaliana HOM05D006879 ORTHO05D008452 1.3e-31 139.8 104 58.7
Cpa.g.sc418.6 Carica papaya HOM05D006879 ORTHO05D008452 5.4e-30 134.4 82 75.6
SGA_v2.0_scaffold52G18964 Striga asiatica HOM05D006879 ORTHO05D008452 5.4e-30 134.4 103 63.1
vmacro00838 Vaccinium macrocarpon HOM05D006879 ORTHO05D008452 1.2e-29 133.3 86 72.1
CAN.G21.4 Capsicum annuum HOM05D006879 ORTHO05D008452 3.5e-29 131.7 107 56.1
TPR.G20905 Trifolium pratense HOM05D006879 ORTHO05D008452 1.3e-28 129.8 80 73.8
RhsimUnG0092300 Rhododendron simsii HOM05D000586 ORTHO05D008452 6.6e-28 127.5 81 71.6
GSVIVG01008857001 Vitis vinifera HOM05D006879 ORTHO05D008452 1.6e-26 122.9 68 82.4
Oeu059437.1 Olea europaea HOM05D006879 ORTHO05D008452 2.6e-24 115.5 68 73.5
Ah.05g171050 Amaranthus hybridus HOM05D006879 ORTHO05D008452 8.3e-23 110.5 82 63.4
Peaxi162Scf00332g00015 Petunia axillaris HOM05D006879 ORTHO05D008452 1.1e-22 110.2 79 65.8
Pp3c12_9490 Physcomitrium patens HOM05D006879 ORTHO05D008452 1.6e-21 106.3 101 51.5
SEGI_19819 Sequoiadendron giganteum HOM05D006879 ORTHO05D008452 7.8e-21 104.0 85 57.6
SMO146G0286 Selaginella moellendorffii HOM05D006879 ORTHO05D008452 1.0e-20 103.6 97 48.5
Zm00001eb082730 Zea mays HOM05D006879 ORTHO05D008452 1.0e-20 103.6 92 54.3
HanXRQChr04g0101301 Helianthus annuus HOM05D006879 ORTHO05D008452 1.7e-20 102.8 67 70.1
HanXRQChr01g0005251 Helianthus annuus HOM05D006879 ORTHO05D008452 2.3e-20 102.4 65 69.2
Mapoly0075s0062 Marchantia polymorpha HOM05D006879 ORTHO05D008452 5.0e-20 101.3 121 42.1
AagrBONN_evm.TU.Sc2ySwM_117.2168 Anthoceros agrestis HOM05D006879 ORTHO05D008452 4.0e-17 91.7 105 45.7
Eucgr.H03927 Eucalyptus grandis HOM05D006879 ORTHO05D008452 5.8e-16 87.8 104 49.0
Os04g0431300 Oryza sativa ssp. japonica HOM05D006879 ORTHO05D008452 7.5e-16 87.4 59 61.0
CBR_g36233 Chara braunii HOM05D006879 ORTHO05D008452 1.0e-12 77.0 59 55.9
Eucgr.H03925 Eucalyptus grandis HOM05D006879 ORTHO05D008452 1.3e-12 76.6 61 59.0
HanXRQChr09g0244451 Helianthus annuus HOM05D006879 ORTHO05D008452 1.3e-12 76.6 44 75.0
MCO09G076 Micromonas commoda HOM05D006879 ORTHO05D008452 8.3e-07 57.4 72 44.4


User provided reference genes

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