Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g26860 Fragaria vesca HOM05D004006 ORTHO05D004585 1.1e-112 409.8 196 100.0
FAN24G3177 Fragaria x ananassa HOM05D004006 ORTHO05D004585 4.8e-111 404.4 196 99.0
FAN27G3464 Fragaria x ananassa HOM05D004006 ORTHO05D004585 1.6e-109 399.4 196 98.0
FAN20G2831 Fragaria x ananassa HOM05D004006 ORTHO05D004585 8.5e-108 393.7 196 96.4
RcHm_v2.0_Chr6g0295711 Rosa chinensis HOM05D004006 ORTHO05D004585 1.0e-105 386.7 196 93.4
Prupe.1G498100 Prunus persica HOM05D004006 ORTHO05D004585 1.8e-81 306.2 216 72.7
MD15G1349700 Malus domestica HOM05D004006 ORTHO05D004585 2.4e-78 295.8 217 73.3
MD08G1163000 Malus domestica HOM05D004006 ORTHO05D004585 6.2e-74 281.2 214 70.1
Duzib093G0488 Durio zibethinus HOM05D004006 ORTHO05D004585 9.2e-62 240.7 205 62.9
Thecc.08G124900 Theobroma cacao HOM05D004006 ORTHO05D004585 1.2e-61 240.4 207 63.3
Sed0014468 Sechium edule HOM05D004006 ORTHO05D004585 7.8e-61 237.7 188 64.4
ClCG08G005630 Citrullus lanatus HOM05D004006 ORTHO05D004585 3.9e-60 235.3 186 65.1
Duzib116G0782 Durio zibethinus HOM05D004006 ORTHO05D004585 4.7e-58 228.4 205 62.0
COL.COLO4_35922 Corchorus olitorius HOM05D004006 ORTHO05D004585 1.1e-57 227.3 211 64.0
CsaV3_6G034510 Cucumis sativus L. HOM05D004006 ORTHO05D004585 2.4e-57 226.1 191 61.8
Hma1.2p1_0186F.1_g081800 Hydrangea macrophylla HOM05D004006 ORTHO05D004585 8.9e-57 224.2 203 60.6
Potri.002G083900 Populus trichocarpa HOM05D004006 ORTHO05D004585 2.6e-56 222.6 206 57.8
CiPaw.06G030700 Carya illinoinensis HOM05D004006 ORTHO05D004585 4.4e-56 221.9 222 59.5
MELO3C010605.2 Cucumis melo HOM05D004006 ORTHO05D004585 4.4e-56 221.9 191 60.7
Cfa016015 Carpinus fangiana HOM05D004006 ORTHO05D004585 7.6e-56 221.1 217 58.1
Dinv27317 Davidia involucrata HOM05D004006 ORTHO05D004585 7.6e-56 221.1 197 61.4
CSS0040709 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 1.7e-55 219.9 199 59.3
Nn5g28281 Nelumbo nucifera HOM05D004006 ORTHO05D004585 1.7e-55 219.9 204 59.3
Nn1g08787 Nelumbo nucifera HOM05D004006 ORTHO05D004585 2.9e-55 219.2 202 60.4
TAR628G0258 Trochodendron aralioides HOM05D004006 ORTHO05D004585 8.4e-55 217.6 200 59.5
TWI56G0850 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 1.1e-54 217.2 211 57.3
TWI36G0058 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 4.2e-54 215.3 220 56.8
Eucgr.F04353 Eucalyptus grandis HOM05D004006 ORTHO05D004585 4.6e-53 211.8 226 53.5
Manes.18G077000 Manihot esculenta HOM05D004006 ORTHO05D004585 4.6e-53 211.8 207 58.9
PGR044G2543 Punica granatum HOM05D004006 ORTHO05D004585 1.3e-52 210.3 225 53.8
CSS0019596 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 2.3e-52 209.5 207 60.9
TAR376G1087 Trochodendron aralioides HOM05D004006 ORTHO05D004585 3.0e-52 209.1 192 59.9
Potri.005G177600 Populus trichocarpa HOM05D004006 ORTHO05D004585 3.9e-52 208.8 205 56.6
Haze_00445 Corylus avellana HOM05D004006 ORTHO05D004585 1.1e-51 207.2 210 59.5
GSVIVG01008871001 Vitis vinifera HOM05D004006 ORTHO05D004585 5.6e-51 204.9 183 60.7
Cc10_g11860 Coffea canephora HOM05D004006 ORTHO05D004585 6.2e-50 201.4 203 52.7
Gorai.009G245700 Gossypium raimondii HOM05D004006 ORTHO05D004585 1.4e-49 200.3 213 56.8
MSTRG.1442 Avicennia marina HOM05D004006 ORTHO05D004585 1.8e-49 199.9 189 54.5
Gohir.A05G235000 Gossypium hirsutum HOM05D004006 ORTHO05D004585 3.1e-49 199.1 213 56.3
Lj7P340T24 Lonicera japonica HOM05D004006 ORTHO05D004585 4.0e-49 198.7 200 55.0
vmacro00834 Vaccinium macrocarpon HOM05D004006 ORTHO05D004585 6.9e-49 198.0 204 56.9
Gohir.D01G180600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 9.0e-49 197.6 209 58.9
Gohir.D05G237300 Gossypium hirsutum HOM05D004006 ORTHO05D004585 9.0e-49 197.6 213 56.3
Gorai.002G222000 Gossypium raimondii HOM05D004006 ORTHO05D004585 9.0e-49 197.6 209 58.9
Duzib041G0805 Durio zibethinus HOM05D004006 ORTHO05D004585 2.9e-47 192.6 178 60.1
Gohir.A01G188900 Gossypium hirsutum HOM05D004006 ORTHO05D004585 3.8e-47 192.2 209 57.4
Glyma.04G249900 Glycine max HOM05D004006 ORTHO05D004585 8.4e-47 191.0 208 52.9
Phvul.009G124900 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 1.9e-46 189.9 219 52.5
CANSAT25G0779 Cannabis sativa HOM05D004006 ORTHO05D004585 4.2e-46 188.7 251 45.4
Oeu050916.1 Olea europaea HOM05D004006 ORTHO05D004585 4.2e-46 188.7 193 53.9
Oeu050917.2 Olea europaea HOM05D004006 ORTHO05D004585 5.4e-46 188.3 193 53.4
Lj1g0016270 Lotus japonicus HOM05D004006 ORTHO05D004585 9.3e-46 187.6 219 54.3
Aqoxy6G00215 Aquilegia oxysepala HOM05D004006 ORTHO05D004585 1.2e-45 187.2 216 51.4
MSTRG.22410 Avicennia marina HOM05D004006 ORTHO05D004585 1.2e-45 187.2 200 48.5
Glyma.06G113000 Glycine max HOM05D004006 ORTHO05D004585 1.6e-45 186.8 210 53.3
Manes.02G162900 Manihot esculenta HOM05D004006 ORTHO05D004585 7.8e-45 184.5 207 53.6
Gorai.005G089800 Gossypium raimondii HOM05D004006 ORTHO05D004585 1.3e-44 183.7 214 51.9
Ca_16556_v3 Cicer arietinum L. HOM05D004006 ORTHO05D004585 2.3e-44 183.0 228 49.1
Rhsim06G0103600 Rhododendron simsii HOM05D004006 ORTHO05D004585 1.1e-43 180.6 200 55.5
TPR.G21067 Trifolium pratense HOM05D004006 ORTHO05D004585 1.1e-43 180.6 232 47.0
Actinidia21321 Actinidia chinensis HOM05D004006 ORTHO05D004585 1.5e-43 180.3 209 54.1
Gohir.A02G073100 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.5e-43 180.3 214 50.5
Peaxi162Scf00018g00027 Petunia axillaris HOM05D004006 ORTHO05D004585 1.9e-43 179.9 221 48.9
Gohir.D02G080400 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.5e-43 179.5 214 50.0
Ciclev10002301m.g Citrus clementina HOM05D004006 ORTHO05D004585 5.6e-43 178.3 231 50.2
RhsimUnG0092700 Rhododendron simsii HOM05D004006 ORTHO05D004585 5.6e-43 178.3 193 49.7
MBI16_g07656_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 2.1e-42 176.4 183 55.2
Actinidia29465 Actinidia chinensis HOM05D004006 ORTHO05D004585 3.6e-42 175.6 199 52.8
CDE02G3357 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 3.6e-42 175.6 191 50.3
Dinv07222 Davidia involucrata HOM05D004006 ORTHO05D004585 3.6e-42 175.6 150 62.7
Lalb_Chr08g0241451 Lupinus albus HOM05D004006 ORTHO05D004585 3.6e-42 175.6 207 48.8
SGA_v2.0_scaffold52G18967 Striga asiatica HOM05D004006 ORTHO05D004585 8.1e-42 174.5 201 50.7
THA.LOC104800196 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 8.1e-42 174.5 210 51.9
THA.LOC104813655 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 8.1e-42 174.5 208 52.4
Lalb_Chr23g0271011 Lupinus albus HOM05D004006 ORTHO05D004585 2.6e-40 169.5 207 47.3
Actinidia03470 Actinidia chinensis HOM05D004006 ORTHO05D004585 5.8e-40 168.3 168 56.0
Psat5g087920 Pisum sativum HOM05D004006 ORTHO05D004585 7.6e-40 167.9 214 46.7
AL1G35020 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 9.9e-40 167.5 195 49.2
Thhalv10008805m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 9.9e-40 167.5 195 49.7
Oeu026152.1 Olea europaea HOM05D004006 ORTHO05D004585 9.9e-40 167.5 184 52.7
Lalb_Chr10g0101721 Lupinus albus HOM05D004006 ORTHO05D004585 2.2e-39 166.4 201 49.8
VMungo1309G2318 Vigna mungo HOM05D004006 ORTHO05D004585 3.8e-39 165.6 216 48.1
CARHR022190 Cardamine hirsuta HOM05D004006 ORTHO05D004585 1.1e-38 164.1 197 50.3
Glyma.13G079800 Glycine max HOM05D004006 ORTHO05D004585 1.9e-38 163.3 203 52.2
arahy.Tifrunner.gnm1.ann1.CFE04G Arachis hypogaea HOM05D004006 ORTHO05D004585 4.2e-38 162.2 230 44.8
Medtr3g088010 Medicago truncatula HOM05D004006 ORTHO05D004585 7.1e-38 161.4 225 45.3
arahy.Tifrunner.gnm1.ann1.J26PKP Arachis hypogaea HOM05D004006 ORTHO05D004585 9.3e-38 161.0 227 45.4
Sp1g19380 Schrenkiella parvula HOM05D004006 ORTHO05D004585 9.3e-38 161.0 196 49.5
A08p28790 Brassica napus HOM05D004006 ORTHO05D004585 2.1e-37 159.8 195 47.7
BraA08t34808Z Brassica rapa HOM05D004006 ORTHO05D004585 2.1e-37 159.8 195 47.7
Carub.0001s2127 Capsella rubella HOM05D004006 ORTHO05D004585 2.1e-37 159.8 195 48.2
BcaC07g39124 Brassica carinata HOM05D004006 ORTHO05D004585 3.5e-37 159.1 195 47.2
C08p21130 Brassica napus HOM05D004006 ORTHO05D004585 3.5e-37 159.1 195 47.2
BolC8t49750H Brassica oleracea HOM05D004006 ORTHO05D004585 3.5e-37 159.1 195 47.2
Migut.C01125 Erythranthe guttata HOM05D004006 ORTHO05D004585 3.5e-37 159.1 200 48.0
Atru.chr13.1448 Acer truncatum HOM05D004006 ORTHO05D004585 7.9e-37 157.9 212 46.2
Atru.chr13.1472 Acer truncatum HOM05D004006 ORTHO05D004585 7.9e-37 157.9 212 46.2
BcaB03g14254 Brassica carinata HOM05D004006 ORTHO05D004585 7.9e-37 157.9 199 48.2
BcaC06g34904 Brassica carinata HOM05D004006 ORTHO05D004585 7.9e-37 157.9 199 48.2
C07p21950 Brassica napus HOM05D004006 ORTHO05D004585 7.9e-37 157.9 199 48.2
BolC7t42725H Brassica oleracea HOM05D004006 ORTHO05D004585 7.9e-37 157.9 199 48.2
BcaB03g11881 Brassica carinata HOM05D004006 ORTHO05D004585 3.9e-36 155.6 187 49.2
CDE08G0380 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 8.7e-36 154.5 184 48.9
Oeu047951.1 Olea europaea HOM05D004006 ORTHO05D004585 8.7e-36 154.5 185 49.7
AT1G21830 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 1.5e-35 153.7 196 46.9
Hund17292 Selenicereus undatus HOM05D004006 ORTHO05D004585 1.9e-35 153.3 235 43.0
Nitab4.5_0016080g0010 Nicotiana tabacum HOM05D004006 ORTHO05D004585 3.3e-35 152.5 217 46.5
ATR0584G004 Amborella trichopoda HOM05D004006 ORTHO05D004585 5.6e-35 151.8 198 46.5
A07p14920 Brassica napus HOM05D004006 ORTHO05D004585 7.4e-35 151.4 199 46.7
BraA07t29235Z Brassica rapa HOM05D004006 ORTHO05D004585 7.4e-35 151.4 199 46.7
MSTRG.25384 Avicennia marina HOM05D004006 ORTHO05D004585 1.6e-34 150.2 189 47.6
DCAR_014087 Daucus carota HOM05D004006 ORTHO05D004585 1.6e-34 150.2 191 50.8
Nitab4.5_0000051g0220 Nicotiana tabacum HOM05D004006 ORTHO05D004585 1.6e-34 150.2 217 48.4
BraA06t24881Z Brassica rapa HOM05D004006 ORTHO05D004585 4.8e-34 148.7 198 46.5
A06p17910 Brassica napus HOM05D004006 ORTHO05D004585 6.2e-34 148.3 198 46.0
Glyma.14G150000 Glycine max HOM05D004006 ORTHO05D004585 6.2e-34 148.3 196 51.5
EL10Ac1g01007 Beta vulgaris HOM05D004006 ORTHO05D004585 8.1e-34 147.9 237 41.4
BcaB07g32181 Brassica carinata HOM05D004006 ORTHO05D004585 1.1e-33 147.5 198 45.5
BcaC05g26103 Brassica carinata HOM05D004006 ORTHO05D004585 1.1e-33 147.5 198 45.5
C05p20810 Brassica napus HOM05D004006 ORTHO05D004585 1.1e-33 147.5 198 45.5
BolC5t30780H Brassica oleracea HOM05D004006 ORTHO05D004585 3.1e-33 146.0 198 44.9
MBI09_g12159_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 3.1e-33 146.0 180 46.7
PGSC0003DMG400027788 Solanum tuberosum HOM05D004006 ORTHO05D004585 4.0e-33 145.6 212 45.3
Oeu059434.1 Olea europaea HOM05D004006 ORTHO05D004585 6.9e-33 144.8 182 44.0
Solyc11g013450.2 Solanum lycopersicum HOM05D004006 ORTHO05D004585 5.8e-32 141.7 214 44.4
BcaB07g32179 Brassica carinata HOM05D004006 ORTHO05D004585 7.6e-32 141.4 198 46.0
Gorai.009G283200 Gossypium raimondii HOM05D004006 ORTHO05D004585 1.7e-31 140.2 173 51.4
Gohir.D05G270600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 3.8e-31 139.0 173 50.9
PSO528G0204 Papaver somniferum HOM05D004006 ORTHO05D004585 5.5e-30 135.2 252 38.1
SGA_v2.0_scaffold24G10460 Striga asiatica HOM05D004006 ORTHO05D004585 1.2e-29 134.0 181 44.8
PSO170G2295 Papaver somniferum HOM05D004006 ORTHO05D004585 3.5e-29 132.5 259 38.6
Migut.N03284 Erythranthe guttata HOM05D004006 ORTHO05D004585 1.0e-28 131.0 185 41.6
SGA_v2.0_scaffold25G11123 Striga asiatica HOM05D004006 ORTHO05D004585 3.9e-28 129.0 173 44.5
SalBow6G7056 Salvia bowleyana HOM05D004006 ORTHO05D004585 5.1e-28 128.6 169 47.9
Lsat_1_v5_gn_5_101481 Lactuca sativa HOM05D004006 ORTHO05D004585 2.1e-26 123.2 190 41.1
SalBow7G3581 Salvia bowleyana HOM05D004006 ORTHO05D004585 3.7e-26 122.5 182 42.3
Cpa.g.sc64.85 Carica papaya HOM05D004006 ORTHO05D004585 6.2e-26 121.7 141 51.8
VMungo0647G0089 Vigna mungo HOM05D004006 ORTHO05D004585 1.4e-25 120.6 102 61.8
THA.LOC104806821 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 3.1e-25 119.4 211 38.4
Hund26811 Selenicereus undatus HOM05D004006 ORTHO05D004585 2.6e-24 116.3 179 41.9
THA.LOC104817318 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 2.9e-23 112.8 215 35.8
Os04g0690500 Oryza sativa ssp. japonica HOM05D004006 ORTHO05D004585 2.5e-22 109.8 219 37.4
HanXRQChr04g0125261 Helianthus annuus HOM05D004006 ORTHO05D004585 3.2e-22 109.4 205 38.5
Sopen11g008440 Solanum pennellii HOM05D004006 ORTHO05D004585 1.6e-21 107.1 150 46.7
HPP92_011945 Vanilla planifolia HOM05D004006 ORTHO05D004585 2.1e-21 106.7 196 35.7
CDE06G0283 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 5.1e-20 102.1 179 38.0
CARHR035970 Cardamine hirsuta HOM05D004006 ORTHO05D004585 8.7e-20 101.3 200 35.0
Gohir.A05G268750 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.9e-19 100.1 123 52.8
Carub.0001s3524 Capsella rubella HOM05D004006 ORTHO05D004585 4.3e-19 99.0 202 31.7
CDE08G1629 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 2.2e-18 96.7 167 38.9
Lj4C625T3 Lonicera japonica HOM05D004006 ORTHO05D004585 2.2e-18 96.7 85 60.0
Aa31LG7G5780 Aethionema arabicum HOM05D004006 ORTHO05D004585 5.3e-17 92.0 151 41.1
AUR62014339 Chenopodium quinoa HOM05D004006 ORTHO05D004585 6.9e-17 91.7 126 46.8
AL1G52380 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 1.5e-16 90.5 200 33.5
A10p07490 Brassica napus HOM05D004006 ORTHO05D004585 1.7e-15 87.0 177 33.9
BraSC36t46058Z Brassica rapa HOM05D004006 ORTHO05D004585 1.7e-15 87.0 177 33.9
BcaC08g42859 Brassica carinata HOM05D004006 ORTHO05D004585 2.2e-15 86.7 177 33.9
C06p00700 Brassica napus HOM05D004006 ORTHO05D004585 2.2e-15 86.7 177 33.9
BolC6t35208H Brassica oleracea HOM05D004006 ORTHO05D004585 2.9e-15 86.3 177 33.3
Thhalv10011817m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 2.9e-15 86.3 157 35.0
Sabra02G0065700 Salix brachista HOM05D004006 ORTHO05D004585 5.0e-15 85.5 98 52.0
Sabra05G0134100 Salix brachista HOM05D004006 ORTHO05D004585 8.5e-15 84.7 95 51.6
PSO017G3194 Papaver somniferum HOM05D004006 ORTHO05D004585 1.1e-14 84.3 257 30.7
AT1G44608 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 1.2e-13 80.9 186 32.3
HPP92_011964 Vanilla planifolia HOM05D004006 ORTHO05D004585 2.1e-13 80.1 188 30.9
RcHm_v2.0_Chr5g0007251 Rosa chinensis HOM05D044691 ORTHO05D004585 6.1e-13 78.6 62 64.5
RcHm_v2.0_Chr5g0081311 Rosa chinensis HOM05D044691 ORTHO05D004585 3.9e-12 75.9 56 69.6
Sp1g33590 Schrenkiella parvula HOM05D004006 ORTHO05D004585 3.9e-12 75.9 187 31.0
unitig_46.g18107 Utricularia gibba HOM05D004006 ORTHO05D004585 1.3e-10 70.9 158 33.5
Aa31LG6G9320 Aethionema arabicum HOM05D004006 ORTHO05D004585 2.4e-09 66.6 175 33.7
CDE12G0877 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 4.1e-09 65.9 116 40.5
Phvul.008G163001 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 2.6e-08 63.2 93 46.2
VMungo0647G1885 Vigna mungo HOM05D004006 ORTHO05D004585 2.9e-07 59.7 72 47.2
Ah.05g171110 Amaranthus hybridus HOM05D004006 ORTHO05D004585 3.2e-06 56.2 93 40.9


User provided reference genes

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