Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g26661 Fragaria vesca HOM05D012067 ORTHO05D000440 3.4e-219 764.6 365 100.0
RcHm_v2.0_Chr6g0295501 Rosa chinensis HOM05D012067 ORTHO05D015131 1.0e-138 497.3 338 74.6
FvH4_2g26662 Fragaria vesca HOM05D014387 ORTHO05D015131 1.0e-101 374.4 342 56.4
FvH4_2g14800 Fragaria vesca HOM05D000001 ORTHO05D010004 1.6e-67 260.8 318 46.2
RcHm_v2.0_Chr3g0473991 Rosa chinensis HOM05D014387 ORTHO05D015131 5.4e-31 139.4 346 31.8
FvH4_3g21700 Fragaria vesca HOM05D012067 ORTHO05D045770 8.1e-27 125.6 407 31.2
Haze_14264 Corylus avellana HOM05D001286 ORTHO05D000440 2.4e-23 114.0 316 28.8
FvH4_5g08112 Fragaria vesca HOM05D012067 ORTHO05D035739 2.4e-23 114.0 334 31.7
FAN08G1085 Fragaria x ananassa HOM05D014387 ORTHO05D015131 3.5e-22 110.2 359 27.9
Cfa007811 Carpinus fangiana HOM05D001286 ORTHO05D000440 5.1e-21 106.3 315 27.3
QL02p058170 Quercus lobata HOM05D001286 ORTHO05D000440 6.6e-21 105.9 320 28.1
FAN11G2761 Fragaria x ananassa HOM05D012067 ORTHO05D035673 1.9e-20 104.4 187 37.4
FAN14G1880 Fragaria x ananassa HOM05D011534 ORTHO05D000440 5.6e-20 102.8 344 29.1
QL93p0100_0562 Quercus lobata HOM05D001286 ORTHO05D000440 5.6e-20 102.8 324 26.5
Ciclev10003216m.g Citrus clementina HOM05D001286 ORTHO05D000440 9.5e-20 102.1 328 25.6
Atru.chr2.465 Acer truncatum HOM05D001286 ORTHO05D000440 2.1e-19 100.9 310 25.5
COL.COLO4_15075 Corchorus olitorius HOM05D010078 ORTHO05D000440 2.1e-19 100.9 315 27.9
FAN14G0757 Fragaria x ananassa HOM05D011534 ORTHO05D000440 3.6e-19 100.1 335 29.3
CiPaw.03G072100 Carya illinoinensis HOM05D001286 ORTHO05D000440 3.1e-18 97.1 321 26.5
FAN11G0917 Fragaria x ananassa HOM05D012067 ORTHO05D045770 5.2e-18 96.3 247 34.4
FAN09G1615 Fragaria x ananassa HOM05D011534 ORTHO05D000440 6.8e-18 95.9 340 26.8
FvH4_6g05681 Fragaria vesca HOM05D011534 ORTHO05D000440 2.0e-17 94.4 304 30.3
FvH4_4g17781 Fragaria vesca HOM05D012067 ORTHO05D000440 2.6e-17 94.0 361 26.3
COL.COLO4_15070 Corchorus olitorius HOM05D010078 ORTHO05D000440 3.4e-17 93.6 331 26.0
FAN16G1828 Fragaria x ananassa HOM05D012067 ORTHO05D015131 3.4e-17 93.6 243 34.2
Cfa007810 Carpinus fangiana HOM05D001286 ORTHO05D000440 4.4e-17 93.2 316 26.6
TAR376G1075 Trochodendron aralioides HOM05D001286 ORTHO05D000440 5.8e-17 92.8 304 30.3
TAR376G1185 Trochodendron aralioides HOM05D001286 ORTHO05D000440 9.9e-17 92.0 327 28.7
RcHm_v2.0_Chr3g0454581 Rosa chinensis HOM05D011534 ORTHO05D000440 1.1e-15 88.6 329 26.7
C01p35560 Brassica napus HOM05D001286 ORTHO05D000440 2.4e-15 87.4 394 23.6
BolC1t03516H Brassica oleracea HOM05D001286 ORTHO05D000440 2.4e-15 87.4 394 23.6
BcaC09g49525 Brassica carinata HOM05D001286 ORTHO05D000440 4.1e-15 86.7 366 23.8
AL2G18850 Arabidopsis lyrata HOM05D001286 ORTHO05D000440 1.6e-14 84.7 361 25.2
TAR628G1131 Trochodendron aralioides HOM05D001286 ORTHO05D000440 3.5e-14 83.6 303 27.4
FvH4_3g21711 Fragaria vesca HOM05D040629 ORTHO05D046184 4.6e-14 83.2 325 25.8
COL.COLO4_15066 Corchorus olitorius HOM05D010078 ORTHO05D000440 7.8e-14 82.4 316 25.6
TWI63G1693 Tripterygium wilfordii HOM05D001286 ORTHO05D000440 1.7e-13 81.3 337 24.3
TAR376G0134 Trochodendron aralioides HOM05D001286 ORTHO05D000440 1.7e-13 81.3 304 29.3
Carub.0002s0673 Capsella rubella HOM05D001286 ORTHO05D000440 3.9e-13 80.1 332 25.3
A01p28080 Brassica napus HOM05D001286 ORTHO05D000440 5.1e-13 79.7 321 24.6
BraA01t02936Z Brassica rapa HOM05D001286 ORTHO05D000440 5.1e-13 79.7 321 24.6
Nn1g05876 Nelumbo nucifera HOM05D001286 ORTHO05D000440 5.1e-13 79.7 330 26.7
Atru.chr2.424 Acer truncatum HOM05D001286 ORTHO05D000440 6.6e-13 79.3 374 23.5
Ciclev10003369m.g Citrus clementina HOM05D001286 ORTHO05D000440 6.6e-13 79.3 315 24.4
COL.COLO4_14639 Corchorus olitorius HOM05D001286 ORTHO05D000440 1.1e-12 78.6 327 23.5
FAN11G1316 Fragaria x ananassa HOM05D040629 ORTHO05D046184 1.5e-12 78.2 341 25.8
TWI12G1091 Tripterygium wilfordii HOM05D001286 ORTHO05D000440 1.9e-12 77.8 336 25.0
COL.COLO4_31677 Corchorus olitorius HOM05D001286 ORTHO05D000440 2.5e-12 77.4 359 24.2
BcaB04g20176 Brassica carinata HOM05D001286 ORTHO05D000440 5.6e-12 76.3 310 26.8
CDE05G0110 Ceratophyllum demersum HOM05D000151 ORTHO05D000074 5.6e-12 76.3 326 25.8
Duzib248G0416 Durio zibethinus HOM05D001286 ORTHO05D000440 7.3e-12 75.9 298 24.8
Thhalv10023551m.g Eutrema salsugineum HOM05D001286 ORTHO05D000440 7.3e-12 75.9 293 23.9
FAN02G2790 Fragaria x ananassa HOM05D014387 ORTHO05D015131 1.2e-11 75.1 190 32.1
Rhsim08G0205300 Rhododendron simsii HOM05D001286 ORTHO05D000440 1.2e-11 75.1 342 25.4
TAR374G1264 Trochodendron aralioides HOM05D001286 ORTHO05D000440 1.6e-11 74.7 349 25.2
COL.COLO4_35200 Corchorus olitorius HOM05D001286 ORTHO05D000440 4.7e-11 73.2 324 26.5
PSO017G5637 Papaver somniferum HOM05D003035 ORTHO05D000440 4.7e-11 73.2 337 24.6
TAR374G0203 Trochodendron aralioides HOM05D001286 ORTHO05D000440 4.7e-11 73.2 321 27.1
CSS0002825 Camellia sinensis var. sinensis HOM05D018164 ORTHO05D017223 6.2e-11 72.8 299 26.4
Sp2g05780 Schrenkiella parvula HOM05D001286 ORTHO05D000440 6.2e-11 72.8 293 24.2
Glyma.10G073700 Glycine max HOM05D001286 ORTHO05D000440 8.1e-11 72.4 336 23.2
PSO210G3833 Papaver somniferum HOM05D003035 ORTHO05D000440 2.4e-10 70.9 325 25.2
Glyma.13G154400 Glycine max HOM05D001286 ORTHO05D000440 3.1e-10 70.5 339 23.6
COL.COLO4_18753 Corchorus olitorius HOM05D001286 ORTHO05D000440 5.2e-10 69.7 352 25.6
arahy.Tifrunner.gnm1.ann1.2MM3YT Arachis hypogaea HOM05D001286 ORTHO05D000440 6.8e-10 69.3 337 24.0
arahy.Tifrunner.gnm1.ann1.4DR6J6 Arachis hypogaea HOM05D001286 ORTHO05D000440 6.8e-10 69.3 337 24.0
PSO339G4296 Papaver somniferum HOM05D003035 ORTHO05D000440 6.8e-10 69.3 327 26.6
Rhsim08G0205000 Rhododendron simsii HOM05D001286 ORTHO05D000440 8.9e-10 68.9 337 24.9
Aa31csc81G80 Aethionema arabicum HOM05D001286 ORTHO05D000440 1.2e-09 68.6 201 26.4
COL.COLO4_18719 Corchorus olitorius HOM05D010078 ORTHO05D000440 1.2e-09 68.6 350 24.3
COL.COLO4_20081 Corchorus olitorius HOM05D001286 ORTHO05D000440 1.2e-09 68.6 186 28.0
CARHR054340 Cardamine hirsuta HOM05D001286 ORTHO05D000440 1.5e-09 68.2 227 28.2
FAN18G0901 Fragaria x ananassa HOM05D013306 ORTHO05D035742 1.5e-09 68.2 305 27.2
PSO675G8679 Papaver somniferum HOM05D003035 ORTHO05D000440 1.5e-09 68.2 341 26.1
Atru.chr2.422 Acer truncatum HOM05D001286 ORTHO05D000440 2.0e-09 67.8 232 22.4
Prupe.7G109000 Prunus persica HOM05D001286 ORTHO05D000440 2.0e-09 67.8 263 23.2
Rhsim08G0204600 Rhododendron simsii HOM05D001286 ORTHO05D000440 2.0e-09 67.8 337 24.3
DCAR_020742 Daucus carota HOM05D001286 ORTHO05D000440 2.6e-09 67.4 210 27.6
Haze_04806 Corylus avellana HOM05D007879 ORTHO05D000440 3.4e-09 67.0 205 29.8
MD11G1297700 Malus domestica HOM05D007879 ORTHO05D000440 4.4e-09 66.6 206 29.6
PSO017G2999 Papaver somniferum HOM05D001286 ORTHO05D000440 4.4e-09 66.6 281 25.3
PSO832G3725 Papaver somniferum HOM05D003035 ORTHO05D000440 5.8e-09 66.2 250 27.6
ATR0851G001 Amborella trichopoda HOM05D001286 ORTHO05D000440 1.3e-08 65.1 242 26.0
CARHR166590 Cardamine hirsuta HOM05D001286 ORTHO05D000440 1.3e-08 65.1 322 23.6
PSO675G1647 Papaver somniferum HOM05D003035 ORTHO05D000440 1.3e-08 65.1 338 24.0
QL07p038675 Quercus lobata HOM05D001286 ORTHO05D000440 1.3e-08 65.1 227 25.1
Thhalv10028097m.g Eutrema salsugineum HOM05D001286 ORTHO05D000440 1.7e-08 64.7 226 29.2
Thecc.07G034800 Theobroma cacao HOM05D003035 ORTHO05D000440 1.7e-08 64.7 317 22.7
PSO210G4675 Papaver somniferum HOM05D003035 ORTHO05D000440 2.2e-08 64.3 227 25.6
Potri.016G079300 Populus trichocarpa HOM05D001286 ORTHO05D000440 2.2e-08 64.3 204 27.5
Ah.08g210520 Amaranthus hybridus HOM05D001286 ORTHO05D000440 3.8e-08 63.5 338 24.3
COL.COLO4_35199 Corchorus olitorius HOM05D001286 ORTHO05D000440 3.8e-08 63.5 332 25.0
Migut.J01025 Erythranthe guttata HOM05D001286 ORTHO05D000440 3.8e-08 63.5 341 22.6
FAN02G2895 Fragaria x ananassa HOM05D001286 ORTHO05D000440 3.8e-08 63.5 366 22.7
PSO210G1368 Papaver somniferum HOM05D003035 ORTHO05D000440 3.8e-08 63.5 344 23.0
PSO210G5942 Papaver somniferum HOM05D003035 ORTHO05D000440 4.9e-08 63.2 313 25.2
PSO210G6501 Papaver somniferum HOM05D003035 ORTHO05D000440 4.9e-08 63.2 252 25.8
TAR636G2857 Trochodendron aralioides HOM05D001286 ORTHO05D000440 4.9e-08 63.2 233 26.6
Ca_00899_v3 Cicer arietinum L. HOM05D001286 ORTHO05D000440 6.4e-08 62.8 229 24.5
QL08p010398 Quercus lobata HOM05D003035 ORTHO05D000440 6.4e-08 62.8 359 24.5
Cfa016618 Carpinus fangiana HOM05D001286 ORTHO05D000440 8.4e-08 62.4 239 24.3
Potri.006G212600 Populus trichocarpa HOM05D001286 ORTHO05D000440 8.4e-08 62.4 229 25.3
RcHm_v2.0_Chr3g0473881 Rosa chinensis HOM05D001286 ORTHO05D000440 8.4e-08 62.4 228 27.2
Haze_19622 Corylus avellana HOM05D001286 ORTHO05D000440 1.1e-07 62.0 203 26.1
Cfa006049 Carpinus fangiana HOM05D007879 ORTHO05D000440 1.4e-07 61.6 204 27.9
QL04p032678 Quercus lobata HOM05D001286 ORTHO05D000440 1.4e-07 61.6 353 22.9
QL08p010298 Quercus lobata HOM05D003035 ORTHO05D000440 1.4e-07 61.6 336 24.1
Atru.chr8.1486 Acer truncatum HOM05D001286 ORTHO05D000440 1.9e-07 61.2 218 24.8
COL.COLO4_17685 Corchorus olitorius HOM05D001286 ORTHO05D000440 1.9e-07 61.2 219 27.9
Duzib132G1061 Durio zibethinus HOM05D007346 ORTHO05D009044 1.9e-07 61.2 131 34.4
Sabra06G0163600 Salix brachista HOM05D001286 ORTHO05D000440 1.9e-07 61.2 242 25.2
Gohir.A12G008500 Gossypium hirsutum HOM05D007879 ORTHO05D000440 2.4e-07 60.8 205 27.8
Sabra16G0087200 Salix brachista HOM05D001286 ORTHO05D000440 2.4e-07 60.8 199 28.1
PSO339G6077 Papaver somniferum HOM05D003035 ORTHO05D000440 3.2e-07 60.5 338 22.2
SalBow6G1188 Salvia bowleyana HOM05D000151 ORTHO05D000074 3.2e-07 60.5 325 23.7
Aqoxy2G03007 Aquilegia oxysepala HOM05D001286 ORTHO05D000440 4.2e-07 60.1 370 23.2
PSO013G0217 Papaver somniferum HOM05D003035 ORTHO05D000440 4.2e-07 60.1 321 24.6
CSS0034097 Camellia sinensis var. sinensis HOM05D000151 ORTHO05D000074 5.4e-07 59.7 355 21.7
Haze_19623 Corylus avellana HOM05D001286 ORTHO05D000440 5.4e-07 59.7 216 24.5
QL08p010225 Quercus lobata HOM05D003035 ORTHO05D000440 5.4e-07 59.7 340 23.5
FvH4_3g13231 Fragaria vesca HOM05D012067 ORTHO05D015131 7.1e-07 59.3 73 41.1
Lsat_1_v5_gn_8_77420 Lactuca sativa HOM05D001286 ORTHO05D000440 7.1e-07 59.3 225 26.2
Lj5g0005331 Lotus japonicus HOM05D001286 ORTHO05D000440 7.1e-07 59.3 230 25.2
Sabra16G0085000 Salix brachista HOM05D001286 ORTHO05D000440 7.1e-07 59.3 200 27.5
Dinv31694 Davidia involucrata HOM05D001286 ORTHO05D000440 9.3e-07 58.9 268 22.8
FAN04G0246 Fragaria x ananassa HOM05D013306 ORTHO05D035742 9.3e-07 58.9 290 24.5
Thecc.07G029900 Theobroma cacao HOM05D001286 ORTHO05D000440 9.3e-07 58.9 237 23.2
TAR627G0263 Trochodendron aralioides HOM05D001286 ORTHO05D000440 9.3e-07 58.9 264 21.2
FAN09G4055 Fragaria x ananassa HOM05D006368 ORTHO05D006739 1.2e-06 58.5 339 26.5
FAN25G2261 Fragaria x ananassa HOM05D012067 ORTHO05D015131 1.2e-06 58.5 264 25.0
Gorai.008G008000 Gossypium raimondii HOM05D007879 ORTHO05D000440 1.2e-06 58.5 205 27.3
TPR.G23322 Trifolium pratense HOM05D001286 ORTHO05D000440 1.2e-06 58.5 210 27.1
Ca_07673_v3 Cicer arietinum L. HOM05D010147 ORTHO05D006739 1.6e-06 58.2 135 29.6
Gohir.D12G008200 Gossypium hirsutum HOM05D007879 ORTHO05D000440 1.6e-06 58.2 205 27.3
Nitab4.5_0003563g0060 Nicotiana tabacum HOM05D007879 ORTHO05D000440 1.6e-06 58.2 223 28.3
Peaxi162Scf00067g00024 Petunia axillaris HOM05D007879 ORTHO05D000440 1.6e-06 58.2 200 29.0
TAR636G0046 Trochodendron aralioides HOM05D000151 ORTHO05D000074 2.1e-06 57.8 370 22.7
COL.COLO4_08033 Corchorus olitorius HOM05D000182 ORTHO05D000112 2.7e-06 57.4 210 28.1
TAR628G1200 Trochodendron aralioides HOM05D000151 ORTHO05D000074 2.7e-06 57.4 350 24.9
CSS0038976 Camellia sinensis var. sinensis HOM05D000151 ORTHO05D000074 4.6e-06 56.6 378 23.8
Manes.01G213200 Manihot esculenta HOM05D007879 ORTHO05D000440 4.6e-06 56.6 190 26.8
Sp7g03220 Schrenkiella parvula HOM05D001286 ORTHO05D000440 4.6e-06 56.6 232 25.0
Nn4g24366 Nelumbo nucifera HOM05D008995 ORTHO05D000074 6.0e-06 56.2 187 24.6
QL02p078713 Quercus lobata HOM05D006742 ORTHO05D008755 6.0e-06 56.2 331 26.3
Rhsim13G0207700 Rhododendron simsii HOM05D004351 ORTHO05D005196 7.8e-06 55.8 332 22.3


User provided reference genes

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