Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g25690 Fragaria vesca HOM05D002674 ORTHO05D007700 1.1e-140 503.4 272 100.0
FAN24G1157 Fragaria x ananassa HOM05D002674 ORTHO05D007700 1.2e-139 500.0 272 99.6
FAN20G3185 Fragaria x ananassa HOM05D002674 ORTHO05D007700 9.3e-137 490.3 272 98.2
FAN15G1012 Fragaria x ananassa HOM05D002674 ORTHO05D007700 1.1e-134 483.4 272 96.7
FAN27G2781 Fragaria x ananassa HOM05D002674 ORTHO05D007700 1.1e-134 483.4 272 90.4
RcHm_v2.0_Chr6g0293961 Rosa chinensis HOM05D002674 ORTHO05D007700 1.5e-123 446.4 275 91.3
Prupe.8G261000 Prunus persica HOM05D002674 ORTHO05D007700 1.7e-114 416.4 286 76.9
MD03G1287800 Malus domestica HOM05D002674 ORTHO05D007700 3.6e-104 382.1 281 73.3
MD11G1310500 Malus domestica HOM05D002674 ORTHO05D007700 2.4e-100 369.4 273 72.9
Atru.chr5.1151 Acer truncatum HOM05D002674 ORTHO05D007700 4.1e-92 342.0 279 69.2
CANSAT25G1821 Cannabis sativa HOM05D002674 ORTHO05D007700 2.2e-90 336.3 283 66.8
CiPaw.07G108400 Carya illinoinensis HOM05D002674 ORTHO05D007700 3.8e-90 335.5 274 67.5
Ciclev10021537m.g Citrus clementina HOM05D002674 ORTHO05D007700 2.3e-87 326.2 283 64.7
ClCG10G010900 Citrullus lanatus HOM05D002674 ORTHO05D007700 5.2e-87 325.1 284 64.1
COL.COLO4_23350 Corchorus olitorius HOM05D002674 ORTHO05D007700 8.8e-87 324.3 281 66.9
Cfa005916 Carpinus fangiana HOM05D002674 ORTHO05D007700 2.0e-86 323.2 285 68.8
Thecc.01G299900 Theobroma cacao HOM05D002674 ORTHO05D007700 7.5e-86 321.2 285 67.0
Manes.01G218600 Manihot esculenta HOM05D002674 ORTHO05D007700 1.3e-85 320.5 283 67.8
Glyma.02G018300 Glycine max HOM05D002674 ORTHO05D007700 1.1e-84 317.4 274 64.2
Actinidia24347 Actinidia chinensis HOM05D002674 ORTHO05D007700 9.1e-84 314.3 271 66.1
Dinv33053 Davidia involucrata HOM05D002674 ORTHO05D007700 1.6e-83 313.5 286 64.0
Duzib138G1545 Durio zibethinus HOM05D002674 ORTHO05D007700 5.9e-83 311.6 282 64.2
Duzib133G1209 Durio zibethinus HOM05D002674 ORTHO05D007700 1.7e-82 310.1 281 64.4
CsaV3_4G000780 Cucumis sativus L. HOM05D002674 ORTHO05D007700 2.9e-82 309.3 287 62.0
MELO3C017958.2 Cucumis melo HOM05D002674 ORTHO05D007700 5.0e-82 308.5 287 62.0
Phvul.007G146100 Phaseolus vulgaris HOM05D002674 ORTHO05D007700 5.0e-82 308.5 274 61.3
TWI23G1032 Tripterygium wilfordii HOM05D002674 ORTHO05D007700 1.5e-81 307.0 278 63.7
Gohir.D08G085300 Gossypium hirsutum HOM05D002674 ORTHO05D007700 5.5e-81 305.1 283 64.7
Gohir.A08G075900 Gossypium hirsutum HOM05D002674 ORTHO05D007700 7.2e-81 304.7 281 64.1
Gorai.004G089800 Gossypium raimondii HOM05D002674 ORTHO05D007700 9.4e-81 304.3 281 64.8
TAR365G1234 Trochodendron aralioides HOM05D002674 ORTHO05D007700 3.6e-80 302.4 270 63.0
Glyma.10G018600 Glycine max HOM05D002674 ORTHO05D007700 1.4e-79 300.4 281 59.1
QL12p028514 Quercus lobata HOM05D002674 ORTHO05D007700 6.8e-79 298.1 296 57.8
CSS0049735 Camellia sinensis var. sinensis HOM05D002674 ORTHO05D007700 9.8e-78 294.3 271 66.8
Psat6g166040 Pisum sativum HOM05D002674 ORTHO05D007700 1.8e-76 290.0 274 60.9
Lj1A25T5 Lonicera japonica HOM05D002674 ORTHO05D007700 4.1e-76 288.9 274 64.2
Cc01_g20810 Coffea canephora HOM05D002674 ORTHO05D007700 7.0e-76 288.1 284 65.1
Ca_10339_v3 Cicer arietinum L. HOM05D002674 ORTHO05D007700 2.2e-74 283.1 276 60.1
TPR.G34010 Trifolium pratense HOM05D002674 ORTHO05D007700 2.2e-74 283.1 274 61.7
Sed0013149 Sechium edule HOM05D002674 ORTHO05D007700 3.8e-74 282.3 271 64.2
Potri.014G129500 Populus trichocarpa HOM05D002674 ORTHO05D007700 3.0e-71 272.7 291 59.8
Potri.002G204700 Populus trichocarpa HOM05D002674 ORTHO05D007700 5.2e-71 271.9 282 58.5
Aqoxy5G00752 Aquilegia oxysepala HOM05D002674 ORTHO05D007700 3.4e-70 269.2 287 56.8
Lj5g0010238 Lotus japonicus HOM05D002674 ORTHO05D007700 4.4e-70 268.9 280 58.6
Sabra14G0096100 Salix brachista HOM05D002674 ORTHO05D007700 5.7e-70 268.5 292 59.2
PGSC0003DMG402017938 Solanum tuberosum HOM05D002674 ORTHO05D007700 1.7e-69 266.9 277 60.3
Nitab4.5_0002470g0100 Nicotiana tabacum HOM05D002674 ORTHO05D007700 3.7e-69 265.8 278 59.7
Sopen06g003880 Solanum pennellii HOM05D002674 ORTHO05D007700 8.3e-69 264.6 277 59.9
Nitab4.5_0005805g0020 Nicotiana tabacum HOM05D002674 ORTHO05D007700 1.8e-68 263.5 275 61.5
TAR636G1278 Trochodendron aralioides HOM05D002674 ORTHO05D007700 1.8e-68 263.5 278 55.0
Solyc06g009120.3 Solanum lycopersicum HOM05D002674 ORTHO05D007700 3.1e-68 262.7 277 59.6
Medtr1g088580 Medicago truncatula HOM05D002674 ORTHO05D007700 4.1e-68 262.3 277 56.3
Rhsim01G0243300 Rhododendron simsii HOM05D002674 ORTHO05D007700 2.0e-67 260.0 295 56.9
Sabra02G0154700 Salix brachista HOM05D002674 ORTHO05D008110 1.5e-65 253.8 268 56.7
Eucgr.K03478 Eucalyptus grandis HOM05D002674 ORTHO05D007700 1.9e-65 253.4 287 55.4
VMungo0720G0138 Vigna mungo HOM05D002674 ORTHO05D007700 2.5e-65 253.1 234 59.4
MBI19_g25354_MAGBIO Magnolia biondii HOM05D002674 ORTHO05D007700 7.3e-65 251.5 284 53.9
Lalb_Chr06g0163511 Lupinus albus HOM05D002674 ORTHO05D007700 6.1e-64 248.4 265 59.2
Sp6g02330 Schrenkiella parvula HOM05D002674 ORTHO05D007700 3.4e-62 242.7 282 53.9
CSS0000533 Camellia sinensis var. sinensis HOM05D002674 ORTHO05D007700 4.4e-62 242.3 282 59.6
Carub.0006s3472 Capsella rubella HOM05D002674 ORTHO05D007700 1.3e-61 240.7 281 55.2
AT4G02425 Arabidopsis thaliana HOM05D002674 ORTHO05D007700 1.4e-60 237.3 282 54.6
C02p38980 Brassica napus HOM05D002674 ORTHO05D007700 3.2e-60 236.1 279 53.4
BolC2t09909H Brassica oleracea HOM05D002674 ORTHO05D007700 5.4e-60 235.3 279 53.4
Nn3g21481 Nelumbo nucifera HOM05D002674 ORTHO05D007700 9.2e-60 234.6 244 56.6
SGA_v2.0_scaffold1G00369 Striga asiatica HOM05D002674 ORTHO05D007700 9.2e-60 234.6 277 56.0
THA.LOC104815928 Tarenaya hassleriana HOM05D002674 ORTHO05D007700 5.9e-59 231.9 282 53.5
BcaC03g16124 Brassica carinata HOM05D002674 ORTHO05D007700 7.8e-59 231.5 279 52.7
A02p24720 Brassica napus HOM05D002674 ORTHO05D007700 2.3e-58 229.9 278 52.5
CARHR250690 Cardamine hirsuta HOM05D002674 ORTHO05D007700 2.3e-58 229.9 292 52.4
Thhalv10028893m.g Eutrema salsugineum HOM05D002674 ORTHO05D007700 3.9e-58 229.2 283 53.4
EL10Ac7g17509 Beta vulgaris HOM05D002674 ORTHO05D007700 6.6e-58 228.4 301 52.2
BraA02t07459Z Brassica rapa HOM05D002674 ORTHO05D007700 1.1e-57 227.6 279 52.0
Migut.D00215 Erythranthe guttata HOM05D002674 ORTHO05D007700 1.5e-57 227.3 270 55.2
Lsat_1_v5_gn_9_5620 Lactuca sativa HOM05D002674 ORTHO05D007700 1.5e-57 227.3 265 57.7
PSO832G4034 Papaver somniferum HOM05D002674 ORTHO05D007700 2.8e-56 223.0 283 50.5
HanXRQChr10g0284651 Helianthus annuus HOM05D002674 ORTHO05D007700 8.0e-56 221.5 285 49.8
HPP92_025205 Vanilla planifolia HOM05D002674 ORTHO05D007700 2.3e-55 219.9 270 51.9
Hund18157 Selenicereus undatus HOM05D002674 ORTHO05D007700 5.2e-55 218.8 291 53.3
THA.LOC104825970 Tarenaya hassleriana HOM05D002674 ORTHO05D007700 1.2e-54 217.6 292 52.1
Sc24g0003790 Simmondsia chinensis HOM05D002674 ORTHO05D007700 2.6e-54 216.5 286 52.4
Lsat_1_v5_gn_7_11800 Lactuca sativa HOM05D002674 ORTHO05D007700 2.0e-51 206.8 243 58.0
Peaxi162Scf00399g00714 Petunia axillaris HOM05D002674 ORTHO05D007700 1.0e-50 204.5 307 45.0
Ah.15g093240 Amaranthus hybridus HOM05D002674 ORTHO05D007700 1.3e-50 204.1 296 49.0
AL6G50650 Arabidopsis lyrata HOM05D002674 ORTHO05D007700 1.3e-50 204.1 232 56.0
CDE11G0633 Ceratophyllum demersum HOM05D002674 ORTHO05D007700 1.3e-50 204.1 272 47.4
Hma1.2p1_0491F.1_g164500 Hydrangea macrophylla HOM05D002674 ORTHO05D007700 1.3e-50 204.1 201 60.7
DCAR_002828 Daucus carota HOM05D002674 ORTHO05D007700 2.3e-50 203.4 261 58.2
CDE05G2513 Ceratophyllum demersum HOM05D002674 ORTHO05D007700 1.6e-48 197.2 272 46.3
Aa31LG1G9740 Aethionema arabicum HOM05D002674 ORTHO05D007700 4.7e-48 195.7 281 49.1
Carub.0001s0195 Capsella rubella HOM05D002674 ORTHO05D007700 8.1e-48 194.9 280 50.4
BcaB05g23628 Brassica carinata HOM05D002674 ORTHO05D007700 3.4e-46 189.5 218 55.0
vmacro15007 Vaccinium macrocarpon HOM05D002674 ORTHO05D007700 7.5e-46 188.3 252 50.0
arahy.Tifrunner.gnm1.ann1.2P60TQ Arachis hypogaea HOM05D002674 ORTHO05D007700 1.4e-44 184.1 249 52.6
arahy.Tifrunner.gnm1.ann1.YN8C8B Arachis hypogaea HOM05D002674 ORTHO05D007700 1.1e-41 174.5 247 49.0
AUR62033139 Chenopodium quinoa HOM05D002674 ORTHO05D007700 2.5e-41 173.3 223 54.3
unitig_22.g5241 Utricularia gibba HOM05D002674 ORTHO05D007700 2.1e-40 170.2 236 51.7
Oeu054122.1 Olea europaea HOM05D002674 ORTHO05D007700 4.0e-39 166.0 171 59.6
Oeu053149.1 Olea europaea HOM05D002674 ORTHO05D007700 2.6e-38 163.3 172 65.1
ECA247G3124 Erigeron canadensis HOM05D002674 ORTHO05D007700 2.2e-37 160.2 265 45.3
Aa31LG5G2060 Aethionema arabicum HOM05D002674 ORTHO05D007700 1.4e-36 157.5 251 47.0
CAN.G1280.1 Capsicum annuum HOM05D002674 ORTHO05D007700 2.3e-34 150.2 252 47.2
AUR62008632 Chenopodium quinoa HOM05D002674 ORTHO05D007700 2.5e-33 146.7 180 56.1
ATR0796G100 Amborella trichopoda HOM05D002674 ORTHO05D007700 3.3e-33 146.4 276 40.6
SEGI_12569 Sequoiadendron giganteum HOM05D002674 ORTHO05D007700 4.9e-29 132.5 341 34.3
Hma1.2p1_0491F.1_g164510 Hydrangea macrophylla HOM05D002674 ORTHO05D007700 8.7e-26 121.7 97 72.2
HPP92_006921 Vanilla planifolia HOM05D002674 ORTHO05D007700 6.2e-24 115.5 230 40.0
Zm00001eb127170 Zea mays HOM05D002674 ORTHO05D007700 4.0e-23 112.8 267 43.1
Os01g0316500 Oryza sativa ssp. japonica HOM05D002674 ORTHO05D007700 1.2e-22 111.3 240 39.6
Zm00001eb285590 Zea mays HOM05D002674 ORTHO05D007700 1.4e-20 104.4 184 45.7
CANSAT56G3445 Cannabis sativa HOM05D002674 ORTHO05D007700 5.1e-18 95.9 94 55.3
BolC6t36475H Brassica oleracea HOM05D000186 ORTHO05D015008 1.3e-10 71.2 91 50.5
BcaC03g16430 Brassica carinata HOM05D002674 ORTHO05D007700 8.7e-10 68.6 81 51.9
Zm00001eb018450 Zea mays HOM05D002674 ORTHO05D007700 3.3e-09 66.6 228 39.5
Haze_04933 Corylus avellana HOM05D002674 ORTHO05D007700 4.8e-08 62.8 38 73.7
VMungo0720G2130 Vigna mungo HOM05D002674 ORTHO05D007700 3.1e-07 60.1 36 75.0


User provided reference genes

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