Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g25350 Fragaria vesca HOM05D003821 ORTHO05D004449 6.6e-31 137.1 90 100.0
RcHm_v2.0_Chr6g0293541 Rosa chinensis HOM05D003821 ORTHO05D004449 7.1e-25 117.1 111 63.1
FAN24G2279 Fragaria x ananassa HOM05D003821 ORTHO05D004449 3.6e-21 104.8 91 69.2
FAN15G2810 Fragaria x ananassa HOM05D003821 ORTHO05D004449 4.7e-21 104.4 90 68.9
FAN20G2567 Fragaria x ananassa HOM05D000897 ORTHO05D000716 6.8e-20 100.5 90 67.8
FAN27G2508 Fragaria x ananassa HOM05D003821 ORTHO05D004449 8.9e-20 100.1 91 67.0
CiPaw.08G097300 Carya illinoinensis HOM05D003821 ORTHO05D004449 2.9e-18 95.1 90 57.8
CANSAT25G1361 Cannabis sativa HOM05D003821 ORTHO05D004449 4.9e-18 94.4 90 76.7
CANSAT78G0465 Cannabis sativa HOM05D003821 ORTHO05D004449 8.4e-18 93.6 84 72.6
AL7G39490 Arabidopsis lyrata HOM05D003821 ORTHO05D004449 1.9e-17 92.4 75 62.7
AT4G15802 Arabidopsis thaliana HOM05D003821 ORTHO05D004449 1.9e-17 92.4 75 62.7
Manes.15G012400 Manihot esculenta HOM05D003821 ORTHO05D004449 1.9e-17 92.4 80 61.2
Ca_10352_v3 Cicer arietinum L. HOM05D003821 ORTHO05D004449 4.2e-17 91.3 90 57.8
Haze_04896 Corylus avellana HOM05D003821 ORTHO05D004449 5.4e-17 90.9 108 52.8
CiPaw.07G106400 Carya illinoinensis HOM05D003821 ORTHO05D004449 7.1e-17 90.5 87 56.3
Psat3g022560 Pisum sativum HOM05D003821 ORTHO05D004449 1.6e-16 89.4 90 56.7
CARHR290310 Cardamine hirsuta HOM05D003821 ORTHO05D004449 2.7e-16 88.6 75 60.0
FvH4_4g18020 Fragaria vesca HOM05D003821 ORTHO05D004449 2.7e-16 88.6 77 76.6
THA.LOC104820264 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 2.7e-16 88.6 79 78.5
Carub.0007s2585 Capsella rubella HOM05D003821 ORTHO05D004449 3.5e-16 88.2 78 60.3
QL10p053326 Quercus lobata HOM05D003821 ORTHO05D004449 3.5e-16 88.2 106 50.9
QL10p054532 Quercus lobata HOM05D003821 ORTHO05D004449 3.5e-16 88.2 106 50.9
Nn4g25849 Nelumbo nucifera HOM05D003821 ORTHO05D004449 4.6e-16 87.8 90 64.4
Gohir.D08G138600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 6.0e-16 87.4 90 65.6
BcaB04g18333 Brassica carinata HOM05D003821 ORTHO05D004449 1.3e-15 86.3 79 59.5
Gohir.A08G117600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 3.0e-15 85.1 90 67.8
Prupe.8G258100 Prunus persica HOM05D003821 ORTHO05D004449 3.0e-15 85.1 90 74.4
Sed0001615 Sechium edule HOM05D003821 ORTHO05D004449 3.0e-15 85.1 103 49.5
BolC7t45268H Brassica oleracea HOM05D003821 ORTHO05D004449 6.6e-15 84.0 79 57.0
Potri.014G131701 Populus trichocarpa HOM05D003821 ORTHO05D004449 6.6e-15 84.0 90 73.3
BraA03t14035Z Brassica rapa HOM05D003821 ORTHO05D004449 8.7e-15 83.6 78 57.7
Oeu027727.1 Olea europaea HOM05D003821 ORTHO05D004449 1.1e-14 83.2 86 53.5
TWI53G1984 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 1.1e-14 83.2 80 55.0
MSTRG.24794 Avicennia marina HOM05D003821 ORTHO05D004449 1.5e-14 82.8 85 55.3
TWI09G0102 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 1.5e-14 82.8 80 55.0
Phvul.009G247900 Phaseolus vulgaris HOM05D003821 ORTHO05D004449 3.3e-14 81.6 72 55.6
Hma1.2p1_0078F.1_g040550 Hydrangea macrophylla HOM05D003821 ORTHO05D004449 5.6e-14 80.9 78 55.1
Oeu026313.1 Olea europaea HOM05D003821 ORTHO05D004449 7.3e-14 80.5 80 55.0
Medtr1g088760 Medicago truncatula HOM05D003821 ORTHO05D004449 9.6e-14 80.1 116 44.8
MSTRG.3917 Avicennia marina HOM05D003821 ORTHO05D004449 1.2e-13 79.7 86 52.3
Migut.G00164 Erythranthe guttata HOM05D003821 ORTHO05D004449 1.6e-13 79.3 86 52.3
TPR.G33980 Trifolium pratense HOM05D003821 ORTHO05D004449 2.1e-13 79.0 106 48.1
TPR.G9594 Trifolium pratense HOM05D003821 ORTHO05D004449 2.1e-13 79.0 115 44.3
Thecc.04G284600 Theobroma cacao HOM05D003821 ORTHO05D004449 2.8e-13 78.6 86 55.8
PGR031G0623 Punica granatum HOM05D003821 ORTHO05D004449 3.6e-13 78.2 90 72.2
Rhsim02G0009100 Rhododendron simsii HOM05D003821 ORTHO05D004449 3.6e-13 78.2 94 50.0
Ciclev10023083m.g Citrus clementina HOM05D003821 ORTHO05D004449 3.1e-12 75.1 90 67.8
Thecc.01G297100 Theobroma cacao HOM05D003821 ORTHO05D004449 4.0e-12 74.7 90 66.7
BraA08t33190Z Brassica rapa HOM05D003821 ORTHO05D004449 5.3e-12 74.3 97 50.5
Nn3g21436 Nelumbo nucifera HOM05D000763 ORTHO05D000599 5.3e-12 74.3 41 87.8
Prupe.1G136900 Prunus persica HOM05D003821 ORTHO05D004449 5.3e-12 74.3 80 71.2
MD11G1304500 Malus domestica HOM05D003821 ORTHO05D004449 6.9e-12 73.9 41 90.2
C01p27060 Brassica napus HOM05D003821 ORTHO05D004449 1.2e-11 73.2 41 85.4
Psat6g166600 Pisum sativum HOM05D003821 ORTHO05D004449 1.2e-11 73.2 90 65.6
Potri.010G025000 Populus trichocarpa HOM05D003821 ORTHO05D004449 1.2e-11 73.2 80 70.0
Sp7g14190 Schrenkiella parvula HOM05D003821 ORTHO05D004449 1.2e-11 73.2 41 85.4
BolC8t48318H Brassica oleracea HOM05D003821 ORTHO05D004449 1.5e-11 72.8 79 57.0
Duzib133G0834 Durio zibethinus HOM05D003821 ORTHO05D004449 1.5e-11 72.8 89 65.2
THA.LOC104817510 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 2.0e-11 72.4 90 63.3
MELO3C016019.2 Cucumis melo HOM05D003821 ORTHO05D004449 4.4e-11 71.2 41 82.9
Lalb_Chr15g0078581 Lupinus albus HOM05D003821 ORTHO05D004449 4.4e-11 71.2 41 85.4
Gorai.004G142200 Gossypium raimondii HOM05D003821 ORTHO05D004449 5.8e-11 70.9 130 38.5
TWI79G0264 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 5.8e-11 70.9 74 52.7
BraA01t02079Z Brassica rapa HOM05D000802 ORTHO05D013138 9.9e-11 70.1 95 48.4
Lalb_Chr18g0047131 Lupinus albus HOM05D003821 ORTHO05D004449 9.9e-11 70.1 41 85.4
RcHm_v2.0_Chr4g0422231 Rosa chinensis HOM05D003821 ORTHO05D004449 9.9e-11 70.1 41 82.9
BcaC06g32965 Brassica carinata HOM05D003821 ORTHO05D004449 1.3e-10 69.7 75 50.7
TAR365G0642 Trochodendron aralioides HOM05D003821 ORTHO05D004449 1.3e-10 69.7 88 64.8
Atru.chr5.1182 Acer truncatum HOM05D003821 ORTHO05D004449 1.7e-10 69.3 90 66.7
ATR0580G132 Amborella trichopoda HOM05D003821 ORTHO05D004449 2.9e-10 68.6 95 47.4
Medtr7g108615 Medicago truncatula HOM05D003821 ORTHO05D004449 2.9e-10 68.6 41 80.5
GSVIVG01017758001 Vitis vinifera HOM05D003821 ORTHO05D004449 2.9e-10 68.6 41 82.9
Lj5g0023739 Lotus japonicus HOM05D003821 ORTHO05D004449 3.8e-10 68.2 90 65.6
Os06g0274000 Oryza sativa ssp. japonica HOM05D003821 ORTHO05D004449 3.8e-10 68.2 82 47.6
ClCG09G006050 Citrullus lanatus HOM05D003821 ORTHO05D004449 6.4e-10 67.4 87 48.3
CsaV3_7G029090 Cucumis sativus L. HOM05D003821 ORTHO05D004449 6.4e-10 67.4 89 48.3
Duzib138G0767 Durio zibethinus HOM05D003821 ORTHO05D004449 6.4e-10 67.4 86 62.8
Migut.N00088 Erythranthe guttata HOM05D003821 ORTHO05D004449 6.4e-10 67.4 80 68.8
Sabra10G0014100 Salix brachista HOM05D003821 ORTHO05D004449 6.4e-10 67.4 41 78.0
BcaNung00244 Brassica carinata HOM05D000802 ORTHO05D013138 8.4e-10 67.0 80 48.8
Cc03_g01940 Coffea canephora HOM05D003821 ORTHO05D004449 8.4e-10 67.0 41 78.0
Gohir.D01G051650 Gossypium hirsutum HOM05D003821 ORTHO05D004449 8.4e-10 67.0 41 78.0
Gohir.D08G087850 Gossypium hirsutum HOM05D003821 ORTHO05D004449 8.4e-10 67.0 41 78.0
Gorai.002G124200 Gossypium raimondii HOM05D003821 ORTHO05D004449 8.4e-10 67.0 41 78.0
MD03G1285000 Malus domestica HOM05D003821 ORTHO05D004449 8.4e-10 67.0 48 77.1
Manes.03G194900 Manihot esculenta HOM05D003821 ORTHO05D004449 8.4e-10 67.0 79 67.1
Manes.01G217100 Manihot esculenta HOM05D003821 ORTHO05D004449 1.1e-09 66.6 91 64.8
Nitab4.5_0000191g0110 Nicotiana tabacum HOM05D003821 ORTHO05D004449 1.1e-09 66.6 114 39.5
Gohir.D08G106266 Gossypium hirsutum HOM05D003821 ORTHO05D004449 1.4e-09 66.2 40 80.0
Hund05412 Selenicereus undatus HOM05D003821 ORTHO05D004449 1.4e-09 66.2 41 78.0
THA.LOC104802574 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 1.9e-09 65.9 78 66.7
Ciclev10007067m.g Citrus clementina HOM05D003821 ORTHO05D004449 2.4e-09 65.5 41 75.6
FAN12G1096 Fragaria x ananassa HOM05D003821 ORTHO05D004449 2.4e-09 65.5 77 49.4
Gohir.A12G010600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 3.2e-09 65.1 90 61.1
Gohir.D12G011000 Gossypium hirsutum HOM05D003821 ORTHO05D004449 3.2e-09 65.1 90 61.1
Atru.chr4.2835 Acer truncatum HOM05D003821 ORTHO05D004449 4.2e-09 64.7 127 36.2
Cpa.g.sc9.208 Carica papaya HOM05D003821 ORTHO05D004449 4.2e-09 64.7 106 45.3
Gohir.A11G115200 Gossypium hirsutum HOM05D003821 ORTHO05D004449 4.2e-09 64.7 90 62.2
Gohir.D11G120200 Gossypium hirsutum HOM05D003821 ORTHO05D004449 4.2e-09 64.7 90 62.2
Lj4g0002252 Lotus japonicus HOM05D003821 ORTHO05D004449 5.4e-09 64.3 40 80.0
TWI14G0562 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 5.4e-09 64.3 90 62.2
Gorai.005G060300 Gossypium raimondii HOM05D003821 ORTHO05D004449 7.1e-09 63.9 41 75.6
Phvul.007G106500 Phaseolus vulgaris HOM05D003821 ORTHO05D004449 7.1e-09 63.9 90 63.3
Gorai.007G128900 Gossypium raimondii HOM05D003821 ORTHO05D004449 9.3e-09 63.5 90 62.2
Gorai.008G011000 Gossypium raimondii HOM05D003821 ORTHO05D004449 1.2e-08 63.2 89 60.7
Actinidia32231 Actinidia chinensis HOM05D003821 ORTHO05D004449 1.6e-08 62.8 91 49.5
Potri.008G208100 Populus trichocarpa HOM05D003821 ORTHO05D004449 1.6e-08 62.8 80 63.8
THA.LOC104821775 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 1.6e-08 62.8 74 68.9
PGR004G1635 Punica granatum HOM05D003821 ORTHO05D004449 2.1e-08 62.4 81 65.4
unitig_748.g8733 Utricularia gibba HOM05D003821 ORTHO05D004449 2.1e-08 62.4 82 43.9
vmacro08148 Vaccinium macrocarpon HOM05D003821 ORTHO05D004449 2.1e-08 62.4 40 72.5
Glyma.10G019600 Glycine max HOM05D003821 ORTHO05D004449 3.5e-08 61.6 90 63.3
EL10Ac7g17441 Beta vulgaris HOM05D003821 ORTHO05D004449 6.0e-08 60.8 124 37.9
A03p49340 Brassica napus HOM05D003821 ORTHO05D004449 6.0e-08 60.8 79 48.1
Sc24g0003850 Simmondsia chinensis HOM05D000714 ORTHO05D000544 7.8e-08 60.5 90 47.8
Ah.08g213210 Amaranthus hybridus HOM05D003821 ORTHO05D004449 1.0e-07 60.1 46 67.4
BcaC06g33446 Brassica carinata HOM05D003821 ORTHO05D004449 1.0e-07 60.1 75 49.3
HanXRQChr06g0169061 Helianthus annuus HOM05D003821 ORTHO05D004449 1.3e-07 59.7 41 73.2
SGA_v2.0_scaffold147G36288 Striga asiatica HOM05D003821 ORTHO05D004449 1.7e-07 59.3 87 44.8
COL.COLO4_13871 Corchorus olitorius HOM05D003821 ORTHO05D004449 2.3e-07 58.9 93 41.9
Nitab4.5_0000570g0120 Nicotiana tabacum HOM05D003821 ORTHO05D004449 2.3e-07 58.9 80 46.2
Peaxi162Scf00086g00435 Petunia axillaris HOM05D003821 ORTHO05D004449 2.3e-07 58.9 34 82.4
Gorai.N022500 Gossypium raimondii HOM05D003821 ORTHO05D004449 3.0e-07 58.5 41 73.2
SHI29056 Sapria himalayana HOM05D000030 ORTHO05D000009 3.9e-07 58.2 83 44.6
DCAR_002813 Daucus carota HOM05D003821 ORTHO05D004449 5.1e-07 57.8 90 46.7
GSVIVG01027975001 Vitis vinifera HOM05D003821 ORTHO05D004449 5.1e-07 57.8 41 75.6
CSS0020997 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 6.6e-07 57.4 40 72.5
CSS0044842 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 6.6e-07 57.4 40 72.5
BcaC07g37933 Brassica carinata HOM05D003821 ORTHO05D004449 8.7e-07 57.0 80 48.8
CSS0048427 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 8.7e-07 57.0 40 72.5
Zm00001eb098770 Zea mays HOM05D003821 ORTHO05D004449 8.7e-07 57.0 75 60.0
arahy.Tifrunner.gnm1.ann1.UD53LE Arachis hypogaea HOM05D003821 ORTHO05D004449 1.1e-06 56.6 90 47.8
Peaxi162Scf00048g00209 Petunia axillaris HOM05D003821 ORTHO05D004449 1.5e-06 56.2 79 44.3
AUR62033168 Chenopodium quinoa HOM05D003821 ORTHO05D004449 1.9e-06 55.8 88 42.0
Glyma.02G154700 Glycine max HOM05D003821 ORTHO05D004449 1.9e-06 55.8 90 61.1
AUR62008616 Chenopodium quinoa HOM05D003821 ORTHO05D004449 3.3e-06 55.1 88 42.0
A01p21700 Brassica napus HOM05D000802 ORTHO05D013138 4.3e-06 54.7 79 48.1
Mapoly0039s0070 Marchantia polymorpha HOM05D003821 ORTHO05D004449 4.3e-06 54.7 80 43.8
FAN17G0959 Fragaria x ananassa HOM05D003821 ORTHO05D004449 7.3e-06 53.9 74 45.9
VMungo1309G1076 Vigna mungo HOM05D003821 ORTHO05D004449 9.6e-06 53.5 74 43.2


User provided reference genes

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