Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g24970 Fragaria vesca HOM05D007654 ORTHO05D009697 3.8e-32 141.0 75 100.0
FAN24G2398 Fragaria x ananassa HOM05D000091 ORTHO05D003679 2.2e-27 125.2 64 100.0
FAN27G0435 Fragaria x ananassa HOM05D000091 ORTHO05D003679 8.2e-27 123.2 64 98.4
FAN15G1923 Fragaria x ananassa HOM05D000091 ORTHO05D003679 2.4e-26 121.7 64 96.9
FAN20G1580 Fragaria x ananassa HOM05D007654 ORTHO05D009697 1.2e-22 109.4 64 92.2
RcHm_v2.0_Chr6g0292931 Rosa chinensis HOM05D007654 ORTHO05D009697 3.9e-21 104.4 64 84.4
Gohir.D12G009200 Gossypium hirsutum HOM05D007654 ORTHO05D009697 1.1e-20 102.8 64 78.1
Gohir.A12G009300 Gossypium hirsutum HOM05D007654 ORTHO05D009697 2.6e-20 101.7 64 76.6
Gorai.008G009300 Gossypium raimondii HOM05D007654 ORTHO05D009697 2.6e-20 101.7 64 76.6
COL.COLO4_08007 Corchorus olitorius HOM05D000091 ORTHO05D003679 9.7e-20 99.8 64 73.4
MD03G1278400 Malus domestica HOM05D007654 ORTHO05D009697 9.7e-20 99.8 65 75.4
Prupe.8G254700 Prunus persica HOM05D007654 ORTHO05D009697 1.7e-19 99.0 64 76.6
MD11G1300800 Malus domestica HOM05D007654 ORTHO05D009697 6.3e-19 97.1 64 75.0
Lj1g0000519 Lotus japonicus HOM05D007654 ORTHO05D009697 1.1e-18 96.3 64 75.0
Duzib138G0105 Durio zibethinus HOM05D007654 ORTHO05D009697 2.4e-18 95.1 61 70.5
arahy.Tifrunner.gnm1.ann1.3EGQ08 Arachis hypogaea HOM05D007654 ORTHO05D009697 4.1e-18 94.4 68 69.1
Haze_04848 Corylus avellana HOM05D007654 ORTHO05D009697 5.3e-18 94.0 61 73.8
Nn3g21360 Nelumbo nucifera HOM05D007654 ORTHO05D009697 5.3e-18 94.0 62 74.2
Phvul.001G203700 Phaseolus vulgaris HOM05D007654 ORTHO05D009697 5.3e-18 94.0 70 71.4
Lalb_Chr15g0078691 Lupinus albus HOM05D007654 ORTHO05D009697 7.0e-18 93.6 64 73.4
Manes.05G066600 Manihot esculenta HOM05D007654 ORTHO05D009697 9.1e-18 93.2 62 72.6
arahy.Tifrunner.gnm1.ann1.4942C7 Arachis hypogaea HOM05D007654 ORTHO05D009697 2.0e-17 92.0 64 71.9
Cfa005999 Carpinus fangiana HOM05D007654 ORTHO05D009697 2.0e-17 92.0 61 72.1
Ca_09124_v3 Cicer arietinum L. HOM05D000091 ORTHO05D003679 2.0e-17 92.0 63 73.0
CSS0025949 Camellia sinensis var. sinensis HOM05D007654 ORTHO05D009697 3.5e-17 91.3 64 68.8
Potri.014G133600 Populus trichocarpa HOM05D007654 ORTHO05D009697 3.5e-17 91.3 64 71.9
Thecc.01G292900 Theobroma cacao HOM05D007654 ORTHO05D009697 3.5e-17 91.3 64 67.2
Atru.chr5.1253 Acer truncatum HOM05D007654 ORTHO05D009697 4.5e-17 90.9 64 68.8
Glyma.03G210600 Glycine max HOM05D007654 ORTHO05D009697 7.7e-17 90.1 67 70.1
Glyma.19G207800 Glycine max HOM05D007654 ORTHO05D009697 7.7e-17 90.1 67 68.7
Manes.01G215200 Manihot esculenta HOM05D007654 ORTHO05D009697 7.7e-17 90.1 61 73.8
Dinv33011 Davidia involucrata HOM05D007654 ORTHO05D009697 1.0e-16 89.7 64 67.2
Lsat_1_v5_gn_8_54301 Lactuca sativa HOM05D007654 ORTHO05D009697 1.0e-16 89.7 61 68.9
QL12p024465 Quercus lobata HOM05D007654 ORTHO05D009697 1.0e-16 89.7 63 68.3
TPR.G9273 Trifolium pratense HOM05D007654 ORTHO05D009697 1.0e-16 89.7 64 71.9
PGR119G1851 Punica granatum HOM05D007654 ORTHO05D009697 1.3e-16 89.4 62 75.8
PSO170G3373 Papaver somniferum HOM05D007654 ORTHO05D009697 2.2e-16 88.6 61 67.2
CANSAT25G3801 Cannabis sativa HOM05D007654 ORTHO05D009697 2.9e-16 88.2 64 70.3
Aa31LG10G16730 Aethionema arabicum HOM05D007654 ORTHO05D009697 3.8e-16 87.8 64 65.6
Hma1.2p1_0209F.1_g088920 Hydrangea macrophylla HOM05D007654 ORTHO05D009697 3.8e-16 87.8 64 67.2
ECA236G4373 Erigeron canadensis HOM05D007654 ORTHO05D009697 6.5e-16 87.0 61 68.9
Eucgr.H01198 Eucalyptus grandis HOM05D007654 ORTHO05D009697 6.5e-16 87.0 64 68.8
Lsat_1_v5_gn_9_47321 Lactuca sativa HOM05D007654 ORTHO05D009697 6.5e-16 87.0 61 67.2
Sabra14G0099700 Salix brachista HOM05D000091 ORTHO05D003679 6.5e-16 87.0 64 70.3
HanXRQChr11g0350121 Helianthus annuus HOM05D007654 ORTHO05D009697 8.5e-16 86.7 61 70.5
Carub.0005s2957 Capsella rubella HOM05D007654 ORTHO05D009697 1.1e-15 86.3 64 65.6
CiPaw.07G102300 Carya illinoinensis HOM05D007654 ORTHO05D009697 1.1e-15 86.3 61 65.6
Medtr7g108290 Medicago truncatula HOM05D000091 ORTHO05D003679 1.1e-15 86.3 65 69.2
Ciclev10023123m.g Citrus clementina HOM05D007654 ORTHO05D009697 1.5e-15 85.9 64 67.2
TWI59G0903 Tripterygium wilfordii HOM05D007654 ORTHO05D009697 1.5e-15 85.9 64 70.3
GSVIVG01010984001 Vitis vinifera HOM05D007654 ORTHO05D009697 1.5e-15 85.9 64 68.8
Oeu057570.1 Olea europaea HOM05D007654 ORTHO05D009697 1.9e-15 85.5 67 58.2
AL5G45700 Arabidopsis lyrata HOM05D007654 ORTHO05D009697 3.2e-15 84.7 64 62.5
AUR62008575 Chenopodium quinoa HOM05D000096 ORTHO05D000045 3.2e-15 84.7 67 61.2
Thhalv10006348m.g Eutrema salsugineum HOM05D007654 ORTHO05D009697 3.2e-15 84.7 64 62.5
Aqoxy2G03067 Aquilegia oxysepala HOM05D007654 ORTHO05D009697 5.5e-15 84.0 61 62.3
Cc01_g20410 Coffea canephora HOM05D007654 ORTHO05D009697 5.5e-15 84.0 64 64.1
Cpa.g.sc9.182 Carica papaya HOM05D007654 ORTHO05D009697 7.2e-15 83.6 61 68.9
AUR62034665 Chenopodium quinoa HOM05D007654 ORTHO05D009697 9.4e-15 83.2 62 61.3
Eucgr.L03487 Eucalyptus grandis HOM05D007654 ORTHO05D009697 1.2e-14 82.8 66 63.6
Rhsim01G0281900 Rhododendron simsii HOM05D007654 ORTHO05D009697 1.6e-14 82.4 53 75.5
Sed0025850 Sechium edule HOM05D007654 ORTHO05D009697 1.6e-14 82.4 56 67.9
vmacro14977 Vaccinium macrocarpon HOM05D007654 ORTHO05D009697 1.6e-14 82.4 53 75.5
AT3G62920 Arabidopsis thaliana HOM05D007654 ORTHO05D009697 2.1e-14 82.0 64 60.9
CARHR173210 Cardamine hirsuta HOM05D007654 ORTHO05D009697 2.1e-14 82.0 64 60.9
CsaV3_7G028850 Cucumis sativus L. HOM05D007654 ORTHO05D009697 2.1e-14 82.0 56 67.9
C08p37630 Brassica napus HOM05D007654 ORTHO05D009697 3.6e-14 81.3 64 59.4
BolC8t51346H Brassica oleracea HOM05D007654 ORTHO05D009697 3.6e-14 81.3 64 59.4
TAR636G0595 Trochodendron aralioides HOM05D007654 ORTHO05D009697 6.1e-14 80.5 61 60.7
MELO3C016052.2 Cucumis melo HOM05D007654 ORTHO05D009697 8.0e-14 80.1 56 66.1
Migut.D00166 Erythranthe guttata HOM05D007654 ORTHO05D009697 8.0e-14 80.1 64 60.9
Solyc09g074620.3 Solanum lycopersicum HOM05D007654 ORTHO05D009697 8.0e-14 80.1 61 65.6
Sopen09g029490 Solanum pennellii HOM05D007654 ORTHO05D009697 8.0e-14 80.1 61 65.6
AUR62026015 Chenopodium quinoa HOM05D007595 ORTHO05D009570 1.0e-13 79.7 66 56.1
PGSC0003DMG400011382 Solanum tuberosum HOM05D007654 ORTHO05D009697 1.0e-13 79.7 61 65.6
A09p54770 Brassica napus HOM05D007654 ORTHO05D009697 1.4e-13 79.3 64 57.8
BraA09t40886Z Brassica rapa HOM05D007654 ORTHO05D009697 1.4e-13 79.3 64 57.8
SalBow3G4040 Salvia bowleyana HOM05D007654 ORTHO05D009697 1.4e-13 79.3 61 60.7
Hund18071 Selenicereus undatus HOM05D007654 ORTHO05D009697 3.0e-13 78.2 57 66.7
ClCG09G006300 Citrullus lanatus HOM05D007654 ORTHO05D009697 4.0e-13 77.8 56 62.5
unitig_0.g650 Utricularia gibba HOM05D007654 ORTHO05D009697 6.8e-13 77.0 63 58.7
arahy.Tifrunner.gnm1.ann1.559R1C Arachis hypogaea HOM05D007654 ORTHO05D009697 8.8e-13 76.6 54 72.2
Nitab4.5_0002006g0110 Nicotiana tabacum HOM05D007654 ORTHO05D009697 1.2e-12 76.3 61 59.0
Actinidia21070 Actinidia chinensis HOM05D007654 ORTHO05D009697 3.4e-12 74.7 50 76.0
BcaB02g08089 Brassica carinata HOM05D007654 ORTHO05D009697 3.4e-12 74.7 63 52.4
vmacro14982 Vaccinium macrocarpon HOM05D007654 ORTHO05D009697 3.4e-12 74.7 52 71.2
Actinidia21074 Actinidia chinensis HOM05D007654 ORTHO05D009697 9.7e-12 73.2 47 72.3
EL10Ac7g17424 Beta vulgaris HOM05D007654 ORTHO05D009697 1.7e-11 72.4 64 57.8
Lsat_1_v5_gn_0_9401 Lactuca sativa HOM05D007654 ORTHO05D009697 3.7e-11 71.2 56 58.9
MBI18_g01968_MAGBIO Magnolia biondii HOM05D007654 ORTHO05D009697 1.4e-10 69.3 58 53.4
A04p00450 Brassica napus HOM05D007654 ORTHO05D009697 1.8e-10 68.9 64 53.1
BraA04t15764Z Brassica rapa HOM05D007654 ORTHO05D009697 1.8e-10 68.9 64 53.1
Zm00001eb365450 Zea mays HOM05D007654 ORTHO05D009697 7.0e-10 67.0 52 61.5
Os05g0371500 Oryza sativa ssp. japonica HOM05D007654 ORTHO05D009697 9.1e-10 66.6 54 53.7
C04p30320 Brassica napus HOM05D007654 ORTHO05D009697 2.0e-09 65.5 51 58.8
BolC4t24565H Brassica oleracea HOM05D007654 ORTHO05D009697 2.0e-09 65.5 51 58.8
SEGI_14019 Sequoiadendron giganteum HOM05D007654 ORTHO05D009697 3.8e-08 61.2 45 60.0
Dinv19737 Davidia involucrata HOM05D007654 ORTHO05D009697 1.9e-07 58.9 35 80.0
Nitab4.5_0001102g0070 Nicotiana tabacum HOM05D007654 ORTHO05D009697 1.9e-07 58.9 41 73.2


User provided reference genes

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