Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g24570 Fragaria vesca HOM05D004682 ORTHO05D006197 0.0e+00 2145.9 1119 100.0
FAN24G1905 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 2126.7 1120 99.4
FAN15G3206 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 2117.8 1121 99.0
FAN27G0404 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 2103.6 1121 98.2
FAN20G1430 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 2054.6 1110 97.3
RcHm_v2.0_Chr6g0292391 Rosa chinensis HOM05D004682 ORTHO05D006197 0.0e+00 2026.9 1117 95.1
Prupe.8G250900 Prunus persica HOM05D004682 ORTHO05D006197 0.0e+00 1667.9 1116 79.5
QL12p023658 Quercus lobata HOM05D004682 ORTHO05D006197 0.0e+00 1587.8 1134 74.0
MD11G1296700 Malus domestica HOM05D004682 ORTHO05D006197 0.0e+00 1569.7 1131 74.3
CiPaw.07G098500 Carya illinoinensis HOM05D004682 ORTHO05D006197 0.0e+00 1561.6 1140 73.2
GSVIVG01011020001 Vitis vinifera HOM05D004682 ORTHO05D006197 0.0e+00 1521.1 1120 72.9
Ciclev10018593m.g Citrus clementina HOM05D004682 ORTHO05D006197 0.0e+00 1498.0 1123 71.5
CSS0044691 Camellia sinensis var. sinensis HOM05D004682 ORTHO05D006197 0.0e+00 1494.9 1126 69.5
Haze_04797 Corylus avellana HOM05D004682 ORTHO05D006197 0.0e+00 1489.2 1023 75.3
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 0.0e+00 1487.2 1080 73.1
Hma1.2p1_0399F.1_g144320 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 0.0e+00 1482.2 1125 69.2
CANSAT25G1381 Cannabis sativa HOM05D004682 ORTHO05D006197 0.0e+00 1476.5 1139 69.0
CsaV3_1G038120 Cucumis sativus L. HOM05D004682 ORTHO05D006197 0.0e+00 1469.1 1120 69.2
Sed0020737 Sechium edule HOM05D004682 ORTHO05D006197 0.0e+00 1466.8 1064 70.7
TAR633G2734 Trochodendron aralioides HOM05D004682 ORTHO05D006197 0.0e+00 1463.7 1088 71.8
Potri.002G230800 Populus trichocarpa HOM05D004682 ORTHO05D006197 0.0e+00 1462.6 1123 70.8
Actinidia00705 Actinidia chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1458.7 1125 69.7
Duzib138G0788 Durio zibethinus HOM05D004682 ORTHO05D006197 0.0e+00 1458.4 1141 69.1
Manes.01G212500 Manihot esculenta HOM05D004682 ORTHO05D006197 0.0e+00 1451.8 1052 70.8
Gohir.A11G118700 Gossypium hirsutum HOM05D004682 ORTHO05D006197 0.0e+00 1441.0 1109 68.1
Thecc.01G288600 Theobroma cacao HOM05D004682 ORTHO05D006197 0.0e+00 1440.6 1122 69.7
Nn3g21239 Nelumbo nucifera HOM05D004682 ORTHO05D006197 0.0e+00 1434.5 1118 69.1
arahy.Tifrunner.gnm1.ann1.SJK0SQ Arachis hypogaea HOM05D004682 ORTHO05D006197 0.0e+00 1434.1 1130 66.4
Gohir.D11G123600 Gossypium hirsutum HOM05D004682 ORTHO05D006197 0.0e+00 1431.4 1109 68.8
Gorai.007G132500 Gossypium raimondii HOM05D004682 ORTHO05D006197 0.0e+00 1422.1 1109 68.4
Eucgr.K03425 Eucalyptus grandis HOM05D004682 ORTHO05D006197 0.0e+00 1421.8 1131 67.6
Rhsim13G0018300 Rhododendron simsii HOM05D004682 ORTHO05D006197 0.0e+00 1418.7 1192 66.4
Sabra02G0176000 Salix brachista HOM05D004682 ORTHO05D006197 0.0e+00 1418.7 1127 69.1
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 0.0e+00 1417.1 992 73.5
PGR044G1334 Punica granatum HOM05D004682 ORTHO05D006197 0.0e+00 1414.8 1102 68.0
Lalb_Chr20g0111011 Lupinus albus HOM05D004682 ORTHO05D006197 0.0e+00 1410.6 1123 66.6
Glyma.03G207600 Glycine max HOM05D004682 ORTHO05D006197 0.0e+00 1407.1 1121 66.3
arahy.Tifrunner.gnm1.ann1.BJ6WT1 Arachis hypogaea HOM05D004682 ORTHO05D006197 0.0e+00 1402.5 1130 65.3
VMungo1383G2773 Vigna mungo HOM05D004682 ORTHO05D006197 0.0e+00 1402.5 1131 65.5
Lj1g0026346 Lotus japonicus HOM05D004682 ORTHO05D006197 0.0e+00 1399.8 1124 67.1
Ca_09103_v3 Cicer arietinum L. HOM05D004682 ORTHO05D006197 0.0e+00 1393.6 1127 65.0
vmacro02515 Vaccinium macrocarpon HOM05D004682 ORTHO05D006197 0.0e+00 1382.9 1232 62.5
Phvul.001G201200 Phaseolus vulgaris HOM05D004682 ORTHO05D006197 0.0e+00 1377.1 1131 64.7
Oeu002696.1 Olea europaea HOM05D004682 ORTHO05D006197 0.0e+00 1376.3 1141 63.9
Cc01_g20100 Coffea canephora HOM05D004682 ORTHO05D006197 0.0e+00 1367.1 1129 64.4
MSTRG.18200 Avicennia marina HOM05D004682 ORTHO05D006197 0.0e+00 1352.0 1126 62.7
TPR.G32282 Trifolium pratense HOM05D004682 ORTHO05D006197 0.0e+00 1346.6 1139 63.4
Aqoxy2G03153 Aquilegia oxysepala HOM05D004682 ORTHO05D006197 0.0e+00 1344.3 1086 65.0
MBI19_g27957_MAGBIO Magnolia biondii HOM05D004682 ORTHO05D006197 0.0e+00 1342.0 1160 63.4
Atru.chr5.1294 Acer truncatum HOM05D004682 ORTHO05D006197 0.0e+00 1340.5 1128 66.0
DCAR_018370 Daucus carota HOM05D004682 ORTHO05D006197 0.0e+00 1329.7 1124 64.8
Lalb_Chr25g0287581 Lupinus albus HOM05D004682 ORTHO05D006197 0.0e+00 1327.8 1086 65.1
Sopen05g022990 Solanum pennellii HOM05D004682 ORTHO05D006197 0.0e+00 1326.6 1099 62.6
AUR62013599 Chenopodium quinoa HOM05D004682 ORTHO05D006197 0.0e+00 1322.0 1039 65.2
Psat3g025520 Pisum sativum HOM05D004682 ORTHO05D006197 0.0e+00 1319.7 1124 62.4
SalBow3G2371 Salvia bowleyana HOM05D004682 ORTHO05D006197 0.0e+00 1318.5 1127 61.1
Medtr7g107440 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1317.8 1133 63.5
AUR62026692 Chenopodium quinoa HOM05D004682 ORTHO05D006197 0.0e+00 1317.0 1099 62.5
Lj2A1184G69 Lonicera japonica HOM05D004682 ORTHO05D006197 0.0e+00 1317.0 1051 66.6
THA.LOC104817537 Tarenaya hassleriana HOM05D004682 ORTHO05D006197 0.0e+00 1313.9 1052 64.3
Solyc05g026510.4 Solanum lycopersicum HOM05D004682 ORTHO05D006197 0.0e+00 1306.2 1115 61.4
CAN.G13.21 Capsicum annuum HOM05D004682 ORTHO05D006197 0.0e+00 1305.8 1098 61.8
CDE05G1251 Ceratophyllum demersum HOM05D004682 ORTHO05D006197 0.0e+00 1302.0 1099 62.7
Migut.D00237 Erythranthe guttata HOM05D004682 ORTHO05D006197 0.0e+00 1300.8 1124 62.2
PSO170G5080 Papaver somniferum HOM05D004682 ORTHO05D006197 0.0e+00 1300.4 1104 63.7
SGA_v2.0_scaffold1G00427 Striga asiatica HOM05D004682 ORTHO05D006197 0.0e+00 1296.2 1133 60.5
AL4G47570 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 0.0e+00 1295.4 1052 62.8
ECA247G2915 Erigeron canadensis HOM05D004682 ORTHO05D006197 0.0e+00 1291.2 1120 61.1
HanXRQChr10g0283031 Helianthus annuus HOM05D004682 ORTHO05D006197 0.0e+00 1289.2 1121 62.5
AT2G47980 Arabidopsis thaliana HOM05D004682 ORTHO05D006197 0.0e+00 1285.4 1052 62.2
CARHR143360 Cardamine hirsuta HOM05D004682 ORTHO05D006197 0.0e+00 1281.9 1086 61.2
EL10Ac1g01562 Beta vulgaris HOM05D004682 ORTHO05D006197 0.0e+00 1281.2 1086 63.8
Sp4g29900 Schrenkiella parvula HOM05D004682 ORTHO05D006197 0.0e+00 1281.2 1128 60.1
PSO407G0071 Papaver somniferum HOM05D004682 ORTHO05D006197 0.0e+00 1279.6 1040 65.2
COL.COLO4_08044 Corchorus olitorius HOM05D004682 ORTHO05D006197 0.0e+00 1279.2 1143 63.9
Thhalv10001288m.g Eutrema salsugineum HOM05D004682 ORTHO05D006197 0.0e+00 1278.5 1113 59.8
TWI59G0906 Tripterygium wilfordii HOM05D004682 ORTHO05D006197 0.0e+00 1273.5 1123 63.0
Aa31LG1G29400 Aethionema arabicum HOM05D004682 ORTHO05D006197 0.0e+00 1272.3 1145 60.3
Carub.0004s3070 Capsella rubella HOM05D004682 ORTHO05D006197 0.0e+00 1263.8 1068 61.0
BcaB02g08728 Brassica carinata HOM05D004682 ORTHO05D006197 0.0e+00 1260.0 1097 59.5
Ah.05g167980 Amaranthus hybridus HOM05D004682 ORTHO05D006197 0.0e+00 1259.2 1088 62.3
C04p00010 Brassica napus HOM05D004682 ORTHO05D006197 0.0e+00 1255.4 1078 60.0
BcaC02g12533 Brassica carinata HOM05D004682 ORTHO05D006197 0.0e+00 1250.3 1080 59.9
Lsat_1_v5_gn_9_5121 Lactuca sativa HOM05D004682 ORTHO05D006197 0.0e+00 1247.6 1118 59.7
BraA05t19005Z Brassica rapa HOM05D004682 ORTHO05D006197 0.0e+00 1245.7 1082 59.5
A05p00090 Brassica napus HOM05D004682 ORTHO05D006197 0.0e+00 1243.4 1078 59.5
BolC4t21648H Brassica oleracea HOM05D004682 ORTHO05D006197 0.0e+00 1242.3 1090 59.4
Nitab4.5_0000282g0030 Nicotiana tabacum HOM05D004682 ORTHO05D006197 0.0e+00 1239.6 1074 61.0
Nitab4.5_0000135g0040 Nicotiana tabacum HOM05D004682 ORTHO05D006197 0.0e+00 1236.5 1377 51.0
Medtr1g048130 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1233.4 1071 61.3
Peaxi162Scf00159g01650 Petunia axillaris HOM05D004682 ORTHO05D006197 0.0e+00 1231.5 1112 60.6
Hund18022 Selenicereus undatus HOM05D004682 ORTHO05D006197 0.0e+00 1231.1 1121 60.0
MELO3C015235.2 Cucumis melo HOM05D004682 ORTHO05D006197 0.0e+00 1223.4 898 70.4
unitig_22.g5252 Utricularia gibba HOM05D004682 ORTHO05D006197 0.0e+00 1193.7 1105 56.1
Os05g0188500 Oryza sativa ssp. japonica HOM05D004682 ORTHO05D006197 0.0e+00 1187.6 1053 59.2
Medtr1g047970 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1183.7 1093 59.9
ATR0706G112 Amborella trichopoda HOM05D004682 ORTHO05D006197 0.0e+00 1177.9 1097 58.2
AL7G17990 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 0.0e+00 1168.7 1060 57.8
SEGI_13218 Sequoiadendron giganteum HOM05D004682 ORTHO05D006197 0.0e+00 1145.6 1025 57.1
Potri.014G151400 Populus trichocarpa HOM05D004682 ORTHO05D006197 0.0e+00 1139.8 879 70.6
Zm00001eb115650 Zea mays HOM05D004682 ORTHO05D006197 0.0e+00 1129.0 1116 54.5
PGSC0003DMG401015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 0.0e+00 1107.8 888 64.3
HPP92_017192 Vanilla planifolia HOM05D004682 ORTHO05D006197 2.0e-310 1069.3 1047 55.7
Sc17g0003630 Simmondsia chinensis HOM05D004682 ORTHO05D006197 5.4e-308 1061.2 813 67.8
Cpa.g.sc9.149 Carica papaya HOM05D004682 ORTHO05D006197 2.3e-306 1055.8 1086 54.3
Hma1.2p1_1049F.1_g251880 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 2.9e-293 1012.3 677 75.2
COL.COLO4_31667 Corchorus olitorius HOM05D004682 ORTHO05D006197 9.3e-292 1007.3 1041 54.2
HPP92_027340 Vanilla planifolia HOM05D004682 ORTHO05D006197 2.5e-289 999.2 1076 52.0
Mapoly0007s0132 Marchantia polymorpha HOM05D004682 ORTHO05D006197 2.7e-283 979.2 1052 50.1
SHI14494 Sapria himalayana HOM05D004682 ORTHO05D006197 2.5e-268 929.5 782 62.1
Pp3c9_5570 Physcomitrium patens HOM05D004682 ORTHO05D006197 4.6e-267 925.2 1025 47.2
SMO347G0479 Selaginella moellendorffii HOM05D004682 ORTHO05D006197 7.7e-262 907.9 965 48.4
QL12p023612 Quercus lobata HOM05D004682 ORTHO05D006197 1.3e-248 864.0 674 69.7
AagrBONN_evm.TU.Sc2ySwM_369.560 Anthoceros agrestis HOM05D004682 ORTHO05D006197 1.6e-243 847.0 1073 45.5
Hma1.2p1_0399F.1_g144310 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 7.8e-222 775.0 533 74.9
Hma1.2p1_1049F.1_g251875 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 7.8e-222 775.0 533 74.9
Hma1.2p1_0399F.1_g144330 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 1.1e-204 718.0 591 64.3
CBR_g31051 Chara braunii HOM05D004682 ORTHO05D006197 1.9e-196 690.6 1037 39.7
ClCG03G018080 Citrullus lanatus HOM05D004682 ORTHO05D006197 9.7e-156 555.4 386 74.4
Medtr3g050420 Medicago truncatula HOM05D004682 ORTHO05D006197 2.1e-89 335.1 399 48.9
HanXRQChr08g0228671 Helianthus annuus HOM05D004682 ORTHO05D006197 6.9e-61 240.4 201 60.2
MCO01G509 Micromonas commoda HOM05D004682 ORTHO05D006197 3.8e-59 234.6 613 27.7
PGSC0003DMG402015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 2.4e-53 215.3 211 54.5
Actinidia24288 Actinidia chinensis HOM05D004682 ORTHO05D006197 1.2e-49 203.0 146 67.8
PSO384G2775 Papaver somniferum HOM05D004682 ORTHO05D006197 1.1e-47 196.4 165 61.8
ClCG03G018060 Citrullus lanatus HOM05D004682 ORTHO05D006197 2.0e-44 185.7 135 65.9
Thecc.06G206000 Theobroma cacao HOM05D004682 ORTHO05D006197 4.5e-44 184.5 172 56.4
PGSC0003DMG400019559 Solanum tuberosum HOM05D004682 ORTHO05D006197 3.3e-39 168.3 174 54.6
Cre17.g736400 Chlamydomonas reinhardtii HOM05D004682 ORTHO05D006197 8.2e-38 163.7 397 30.7
Cfa025969 Carpinus fangiana HOM05D004682 ORTHO05D006197 1.4e-37 162.9 618 24.8
HanXRQChr08g0228681 Helianthus annuus HOM05D004682 ORTHO05D006197 3.6e-33 148.3 162 52.5
DCAR_030309 Daucus carota HOM05D004682 ORTHO05D006197 4.1e-29 134.8 152 52.0
PGSC0003DMG400006683 Solanum tuberosum HOM05D004682 ORTHO05D006197 5.7e-23 114.4 122 52.5
Medtr5g092930 Medicago truncatula HOM05D004682 ORTHO05D006197 5.3e-21 107.8 98 58.2
RcHm_v2.0_Chr5g0002211 Rosa chinensis HOM05D004682 ORTHO05D029379 3.5e-20 105.1 243 29.6
PGSC0003DMG400019558 Solanum tuberosum HOM05D004682 ORTHO05D006197 3.0e-16 92.0 105 46.7
Thecc.06G205900 Theobroma cacao HOM05D004682 ORTHO05D006197 8.2e-14 84.0 74 60.8
Hma1.2p1_1049F.1_g251890 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 5.0e-11 74.7 87 56.3
Medtr5g092920 Medicago truncatula HOM05D036979 ORTHO05D006197 1.9e-10 72.8 113 38.9
Medtr7g089690 Medicago truncatula HOM05D004682 ORTHO05D006197 3.2e-10 72.0 68 54.4
Nitab4.5_0000282g0040 Nicotiana tabacum HOM05D004682 ORTHO05D006197 1.4e-08 66.6 95 43.2
PGSC0003DMG400005432 Solanum tuberosum HOM05D004682 ORTHO05D003903 1.2e-07 63.5 38 68.4
Solyc09g037030.2 Solanum lycopersicum HOM05D020974 ORTHO05D023151 1.7e-06 59.7 118 36.4
Solyc03g051710.1 Solanum lycopersicum HOM05D004682 ORTHO05D006197 3.7e-06 58.5 49 57.1
PGSC0003DMG400017057 Solanum tuberosum HOM05D004682 ORTHO05D005906 8.3e-06 57.4 93 37.6


User provided reference genes

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