Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g24190 Fragaria vesca HOM05D012992 ORTHO05D045488 4.5e-58 227.6 110 100.0
FAN24G0283 Fragaria x ananassa HOM05D012992 ORTHO05D045488 3.1e-51 204.9 105 95.2
FvH4_2g24200 Fragaria vesca HOM05D012992 ORTHO05D001207 2.8e-39 165.2 109 74.3
FAN24G0490 Fragaria x ananassa HOM05D012992 ORTHO05D001207 2.8e-39 165.2 109 74.3
FAN27G0987 Fragaria x ananassa HOM05D012992 ORTHO05D020705 1.8e-38 162.5 90 92.2
FAN20G0181 Fragaria x ananassa HOM05D012992 ORTHO05D001207 1.5e-37 159.5 109 72.5
FAN20G2539 Fragaria x ananassa HOM05D012992 ORTHO05D020705 1.1e-27 126.7 110 62.7
FAN07G0948 Fragaria x ananassa HOM05D001578 ORTHO05D001207 1.9e-27 125.9 110 59.1
FAN15G2801 Fragaria x ananassa HOM05D012992 ORTHO05D020705 2.4e-27 125.6 109 60.6
FAN27G2024 Fragaria x ananassa HOM05D012992 ORTHO05D020705 1.6e-26 122.9 109 59.6
FAN15G3114 Fragaria x ananassa HOM05D012992 ORTHO05D001207 2.1e-26 122.5 109 58.7
FAN24G0865 Fragaria x ananassa HOM05D012992 ORTHO05D020705 2.1e-26 122.5 109 59.6
RcHm_v2.0_Chr3g0482891 Rosa chinensis HOM05D001578 ORTHO05D001207 9.6e-16 87.0 90 48.9
FAN24G1812 Fragaria x ananassa HOM05D012992 ORTHO05D020705 2.8e-15 85.5 80 61.2
Prupe.1G114500 Prunus persica HOM05D001578 ORTHO05D001207 1.5e-13 79.7 100 41.0
MD16G1150100 Malus domestica HOM05D001578 ORTHO05D001207 2.2e-12 75.9 100 42.0
RcHm_v2.0_Chr2g0143761 Rosa chinensis HOM05D001578 ORTHO05D001207 2.9e-12 75.5 108 38.9
RcHm_v2.0_Chr2g0144321 Rosa chinensis HOM05D001578 ORTHO05D001207 2.9e-12 75.5 108 38.9
RcHm_v2.0_Chr7g0200071 Rosa chinensis HOM05D001578 ORTHO05D001207 2.9e-12 75.5 108 38.9
FAN02G2223 Fragaria x ananassa HOM05D001578 ORTHO05D001207 8.4e-12 73.9 100 41.0
MD13G1150400 Malus domestica HOM05D001578 ORTHO05D001207 1.4e-11 73.2 101 37.6
MD13G1150200 Malus domestica HOM05D001578 ORTHO05D001207 1.9e-11 72.8 110 39.1
FAN07G2152 Fragaria x ananassa HOM05D001578 ORTHO05D001207 3.2e-11 72.0 88 45.5
FvH4_2g24210 Fragaria vesca HOM05D012992 ORTHO05D020705 4.2e-11 71.6 68 60.3
FvH4_4g20440 Fragaria vesca HOM05D001578 ORTHO05D001207 7.1e-11 70.9 88 45.5
FAN12G2021 Fragaria x ananassa HOM05D001578 ORTHO05D001207 7.1e-11 70.9 88 45.5
MD13G1150300 Malus domestica HOM05D001578 ORTHO05D001207 7.1e-11 70.9 100 40.0
Prupe.3G146800 Prunus persica HOM05D001578 ORTHO05D001207 7.1e-11 70.9 101 43.6
Ca_21409_v3 Cicer arietinum L. HOM05D001578 ORTHO05D001207 2.1e-10 69.3 98 34.7
Ca_21424_v3 Cicer arietinum L. HOM05D001578 ORTHO05D001207 2.1e-10 69.3 98 34.7
Ca_21425_v3 Cicer arietinum L. HOM05D001578 ORTHO05D001207 2.1e-10 69.3 98 34.7
Prupe.5G112600 Prunus persica HOM05D001578 ORTHO05D001207 2.1e-10 69.3 95 42.1
Manes.15G002100 Manihot esculenta HOM05D001578 ORTHO05D001207 1.0e-09 67.0 89 43.8
FvH4_1g05890 Fragaria vesca HOM05D001578 ORTHO05D001207 1.3e-09 66.6 89 44.9
RcHm_v2.0_Chr4g0425961 Rosa chinensis HOM05D001578 ORTHO05D001207 2.3e-09 65.9 85 42.4
RcHm_v2.0_Chr4g0426481 Rosa chinensis HOM05D001578 ORTHO05D001207 2.3e-09 65.9 89 42.7
TPR.G25429 Trifolium pratense HOM05D001578 ORTHO05D001207 3.0e-09 65.5 102 36.3
FvH4_5g04330 Fragaria vesca HOM05D001578 ORTHO05D001207 3.9e-09 65.1 88 40.9
FAN18G0021 Fragaria x ananassa HOM05D001578 ORTHO05D001207 5.1e-09 64.7 88 40.9
QL06p012826 Quercus lobata HOM05D001578 ORTHO05D001207 6.6e-09 64.3 93 40.9
TPR.G25401 Trifolium pratense HOM05D001578 ORTHO05D001207 6.6e-09 64.3 102 36.3
FvH4_6g33790 Fragaria vesca HOM05D001578 ORTHO05D001207 8.7e-09 63.9 90 41.1
FAN07G1428 Fragaria x ananassa HOM05D001578 ORTHO05D001207 8.7e-09 63.9 85 38.8
FAN07G2406 Fragaria x ananassa HOM05D001578 ORTHO05D001207 8.7e-09 63.9 85 37.6
Manes.03G207000 Manihot esculenta HOM05D001578 ORTHO05D001207 1.1e-08 63.5 111 38.7
MSTRG.16314 Avicennia marina HOM05D001578 ORTHO05D001207 1.5e-08 63.2 89 41.6
Lalb_Chr12g0200781 Lupinus albus HOM05D001578 ORTHO05D001207 3.3e-08 62.0 89 40.4
Medtr4g122890 Medicago truncatula HOM05D001578 ORTHO05D001207 3.3e-08 62.0 82 39.0
Thhalv10011825m.g Eutrema salsugineum HOM05D001578 ORTHO05D001207 4.3e-08 61.6 89 39.3
FAN12G0910 Fragaria x ananassa HOM05D001578 ORTHO05D001207 4.3e-08 61.6 85 37.6
Medtr4g122750 Medicago truncatula HOM05D001578 ORTHO05D001207 4.3e-08 61.6 85 37.6
Lalb_Chr07g0181931 Lupinus albus HOM05D001578 ORTHO05D001207 5.6e-08 61.2 91 38.5
MD16G1150000 Malus domestica HOM05D001578 ORTHO05D001207 5.6e-08 61.2 83 42.2
Lj6g0013229 Lotus japonicus HOM05D001578 ORTHO05D001207 7.3e-08 60.8 100 35.0
TPR.G25407 Trifolium pratense HOM05D001578 ORTHO05D001207 7.3e-08 60.8 87 37.9
CANSAT78G0727 Cannabis sativa HOM05D001578 ORTHO05D001207 9.6e-08 60.5 87 39.1
DCAR_023358 Daucus carota HOM05D001578 ORTHO05D001207 9.6e-08 60.5 107 35.5
FvH4_4g20510 Fragaria vesca HOM05D001578 ORTHO05D001207 1.3e-07 60.1 84 38.1
AL1G54460 Arabidopsis lyrata HOM05D001578 ORTHO05D001207 1.6e-07 59.7 87 40.2
FvH4_4g20480 Fragaria vesca HOM05D001578 ORTHO05D001207 1.6e-07 59.7 85 36.5
Psat0s2823g0080 Pisum sativum HOM05D001578 ORTHO05D001207 2.1e-07 59.3 88 36.4
Carub.0001s3704 Capsella rubella HOM05D001578 ORTHO05D001207 2.8e-07 58.9 89 38.2
Glyma.17G036400 Glycine max HOM05D001578 ORTHO05D001207 2.8e-07 58.9 92 34.8
QL06p012819 Quercus lobata HOM05D001578 ORTHO05D001207 2.8e-07 58.9 103 37.9
Haze_01333 Corylus avellana HOM05D001578 ORTHO05D001207 3.6e-07 58.5 108 36.1
Haze_01338 Corylus avellana HOM05D001578 ORTHO05D001207 3.6e-07 58.5 108 36.1
Migut.N00031 Erythranthe guttata HOM05D001578 ORTHO05D001207 3.6e-07 58.5 100 36.0
QL06p012845 Quercus lobata HOM05D001578 ORTHO05D001207 3.6e-07 58.5 104 34.6
BcaC08g42990 Brassica carinata HOM05D001578 ORTHO05D001207 4.8e-07 58.2 89 37.1
A06p04790 Brassica napus HOM05D001578 ORTHO05D001207 4.8e-07 58.2 89 37.1
C06p02320 Brassica napus HOM05D001578 ORTHO05D001207 4.8e-07 58.2 89 37.1
BolC6t35358H Brassica oleracea HOM05D001578 ORTHO05D001207 4.8e-07 58.2 89 37.1
BraA06t23683Z Brassica rapa HOM05D001578 ORTHO05D001207 4.8e-07 58.2 89 37.1
CiPaw.01G136000 Carya illinoinensis HOM05D001578 ORTHO05D001207 4.8e-07 58.2 90 36.7
Lalb_Chr12g0200771 Lupinus albus HOM05D001578 ORTHO05D001207 4.8e-07 58.2 90 38.9
QL06p012837 Quercus lobata HOM05D001578 ORTHO05D001207 4.8e-07 58.2 104 34.6
Sabra08G0077500 Salix brachista HOM05D001578 ORTHO05D001207 4.8e-07 58.2 108 33.3
FAN19G1571 Fragaria x ananassa HOM05D004175 ORTHO05D004664 6.2e-07 57.8 75 45.3
AT1G47960 Arabidopsis thaliana HOM05D001578 ORTHO05D001207 8.1e-07 57.4 87 39.1
Haze_01334 Corylus avellana HOM05D001578 ORTHO05D001207 8.1e-07 57.4 101 36.6
MD13G1149700 Malus domestica HOM05D001578 ORTHO05D001207 8.1e-07 57.4 98 32.7
BcaB07g33804 Brassica carinata HOM05D001578 ORTHO05D001207 1.1e-06 57.0 89 37.1
CARHR037570 Cardamine hirsuta HOM05D001578 ORTHO05D001207 1.1e-06 57.0 100 35.0
Haze_01339 Corylus avellana HOM05D001578 ORTHO05D001207 1.1e-06 57.0 101 36.6
Manes.03G207100 Manihot esculenta HOM05D001578 ORTHO05D001207 1.1e-06 57.0 89 38.2
CiPaw.01G135900 Carya illinoinensis HOM05D001578 ORTHO05D001207 1.4e-06 56.6 104 34.6
Dinv44262 Davidia involucrata HOM05D001578 ORTHO05D001207 1.4e-06 56.6 90 36.7
Glyma.07G237300 Glycine max HOM05D001578 ORTHO05D001207 1.4e-06 56.6 92 34.8
PGR004G2339 Punica granatum HOM05D001578 ORTHO05D001207 1.4e-06 56.6 93 39.8
COL.COLO4_34578 Corchorus olitorius HOM05D001578 ORTHO05D001207 1.8e-06 56.2 104 35.6
Glyma.20G029700 Glycine max HOM05D001578 ORTHO05D001207 1.8e-06 56.2 99 32.3
Potri.009G083500 Populus trichocarpa HOM05D001578 ORTHO05D001207 1.8e-06 56.2 90 34.4
CARHR037580 Cardamine hirsuta HOM05D001578 ORTHO05D001207 2.4e-06 55.8 87 37.9
Eucgr.H04068 Eucalyptus grandis HOM05D001578 ORTHO05D001207 2.4e-06 55.8 90 32.2
Eucgr.L02840 Eucalyptus grandis HOM05D001578 ORTHO05D001207 2.4e-06 55.8 90 32.2
Glyma.17G036300 Glycine max HOM05D001578 ORTHO05D001207 2.4e-06 55.8 89 34.8
PGR031G1824 Punica granatum HOM05D001578 ORTHO05D001207 2.4e-06 55.8 102 35.3
CiPaw.01G135800 Carya illinoinensis HOM05D001578 ORTHO05D001207 3.1e-06 55.5 62 48.4
Lalb_Chr07g0181941 Lupinus albus HOM05D001578 ORTHO05D001207 3.1e-06 55.5 89 37.1
Lalb_Chr20g0117771 Lupinus albus HOM05D001578 ORTHO05D001207 3.1e-06 55.5 85 37.6
Phvul.003G117300 Phaseolus vulgaris HOM05D001578 ORTHO05D001207 3.1e-06 55.5 91 34.1
THA.LOC104820316 Tarenaya hassleriana HOM05D001578 ORTHO05D001207 3.1e-06 55.5 89 38.2
Cfa015284 Carpinus fangiana HOM05D001578 ORTHO05D001207 4.0e-06 55.1 108 35.2
Gohir.D01G023565 Gossypium hirsutum HOM05D001578 ORTHO05D001207 4.0e-06 55.1 105 33.3
Gorai.002G031100 Gossypium raimondii HOM05D001578 ORTHO05D001207 4.0e-06 55.1 105 33.3
MD03G1249700 Malus domestica HOM05D001578 ORTHO05D001207 4.0e-06 55.1 89 39.3
Prupe.1G113800 Prunus persica HOM05D001578 ORTHO05D001207 4.0e-06 55.1 109 34.9
Duzib052G1048 Durio zibethinus HOM05D001578 ORTHO05D001207 5.3e-06 54.7 104 32.7
Gohir.A05G275500 Gossypium hirsutum HOM05D001578 ORTHO05D001207 5.3e-06 54.7 91 35.2
Gohir.D05G277600 Gossypium hirsutum HOM05D001578 ORTHO05D001207 5.3e-06 54.7 91 35.2
Gohir.D10G180600 Gossypium hirsutum HOM05D001578 ORTHO05D001207 5.3e-06 54.7 103 35.0
Gorai.009G290600 Gossypium raimondii HOM05D001578 ORTHO05D001207 5.3e-06 54.7 91 35.2
Gorai.011G202100 Gossypium raimondii HOM05D001578 ORTHO05D001207 5.3e-06 54.7 103 35.0
Lsat_1_v5_gn_5_185420 Lactuca sativa HOM05D001578 ORTHO05D001207 5.3e-06 54.7 87 32.2
COL.COLO4_34581 Corchorus olitorius HOM05D001578 ORTHO05D001207 6.9e-06 54.3 103 31.1
Phvul.003G117100 Phaseolus vulgaris HOM05D001578 ORTHO05D001207 6.9e-06 54.3 89 34.8
Psat0s2818g0040 Pisum sativum HOM05D001578 ORTHO05D001207 6.9e-06 54.3 102 33.3
RcHm_v2.0_Chr7g0207981 Rosa chinensis HOM05D001445 ORTHO05D001261 6.9e-06 54.3 92 33.7
Sabra10G0043600 Salix brachista HOM05D001578 ORTHO05D001207 6.9e-06 54.3 87 37.9
TPR.G25397 Trifolium pratense HOM05D001578 ORTHO05D001207 6.9e-06 54.3 87 33.3
CARHR088530 Cardamine hirsuta HOM05D001578 ORTHO05D001207 9.0e-06 53.9 89 34.8
Migut.M01936 Erythranthe guttata HOM05D001578 ORTHO05D001207 9.0e-06 53.9 88 31.8
Gohir.A01G035200 Gossypium hirsutum HOM05D001578 ORTHO05D001207 9.0e-06 53.9 105 32.4
TWI53G0804 Tripterygium wilfordii HOM05D001578 ORTHO05D001207 9.0e-06 53.9 98 31.6
TWI75G0074 Tripterygium wilfordii HOM05D001578 ORTHO05D001207 9.0e-06 53.9 89 34.8


User provided reference genes

Program Settings