Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g23841 Fragaria vesca HOM05D005179 ORTHO05D006225 5.6e-69 265.0 240 100.0
FAN27G1844 Fragaria x ananassa HOM05D005179 ORTHO05D006225 1.1e-48 197.6 225 89.8
FAN15G0349 Fragaria x ananassa HOM05D005179 ORTHO05D006225 1.3e-46 190.7 224 87.1
FAN15G1538 Fragaria x ananassa HOM05D005179 ORTHO05D006225 3.9e-46 189.1 223 87.0
FAN24G3244 Fragaria x ananassa HOM05D005179 ORTHO05D006225 5.1e-46 188.7 247 83.8
FAN20G2888 Fragaria x ananassa HOM05D005179 ORTHO05D006225 2.4e-43 179.9 223 66.4
RcHm_v2.0_Chr6g0291441 Rosa chinensis HOM05D005179 ORTHO05D006225 1.5e-37 160.6 224 68.3
Prupe.8G243700 Prunus persica HOM05D005179 ORTHO05D006225 1.1e-19 101.3 224 53.1
MD03G1268100 Malus domestica HOM05D005179 ORTHO05D006225 1.2e-18 97.8 206 50.0
MD11G1289000 Malus domestica HOM05D000257 ORTHO05D009070 5.9e-18 95.5 211 50.2
Lj5g0012316 Lotus japonicus HOM05D005179 ORTHO05D006225 5.5e-16 89.0 54 66.7
Lsat_1_v5_gn_1_29921 Lactuca sativa HOM05D005179 ORTHO05D006225 9.4e-16 88.2 51 68.6
Glyma.03G151700 Glycine max HOM05D005179 ORTHO05D006225 2.1e-15 87.0 54 61.1
VMungo1383G3409 Vigna mungo HOM05D005179 ORTHO05D006225 3.6e-15 86.3 54 59.3
Ca_08572_v3 Cicer arietinum L. HOM05D005179 ORTHO05D006225 4.7e-15 85.9 58 56.9
ECA247G2094 Erigeron canadensis HOM05D005179 ORTHO05D006225 4.7e-15 85.9 51 66.7
Lalb_Chr21g0306521 Lupinus albus HOM05D005179 ORTHO05D006225 4.7e-15 85.9 58 55.2
TPR.G1598 Trifolium pratense HOM05D005179 ORTHO05D006225 4.7e-15 85.9 54 61.1
Potri.014G139100 Populus trichocarpa HOM05D005179 ORTHO05D006225 7.9e-15 85.1 58 55.2
Sabra14G0104900 Salix brachista HOM05D005179 ORTHO05D006225 7.9e-15 85.1 48 66.7
Glyma.19G154300 Glycine max HOM05D005179 ORTHO05D006225 1.0e-14 84.7 54 61.1
Glyma.10G025200 Glycine max HOM05D005179 ORTHO05D006225 1.8e-14 84.0 54 61.1
Medtr1g032050 Medicago truncatula HOM05D005179 ORTHO05D006225 1.8e-14 84.0 228 36.4
Medtr1g032400 Medicago truncatula HOM05D005179 ORTHO05D006225 1.8e-14 84.0 228 36.4
Phvul.007G170000 Phaseolus vulgaris HOM05D005179 ORTHO05D006225 2.3e-14 83.6 61 57.4
Ciclev10024447m.g Citrus clementina HOM05D005179 ORTHO05D006225 3.9e-14 82.8 221 34.4
Glyma.02G148700 Glycine max HOM05D005179 ORTHO05D006225 5.1e-14 82.4 54 61.1
Dinv32955 Davidia involucrata HOM05D005179 ORTHO05D006225 6.7e-14 82.0 51 62.7
CsaV3_7G028640 Cucumis sativus L. HOM05D005179 ORTHO05D006225 8.8e-14 81.6 52 63.5
Medtr7g094650 Medicago truncatula HOM05D005179 ORTHO05D006225 8.8e-14 81.6 58 53.4
HanXRQChr15g0466391 Helianthus annuus HOM05D005179 ORTHO05D006225 1.1e-13 81.3 51 60.8
Psat3g065120 Pisum sativum HOM05D005179 ORTHO05D006225 2.0e-13 80.5 58 53.4
Psat6g061040 Pisum sativum HOM05D005179 ORTHO05D006225 2.0e-13 80.5 54 55.6
Phvul.001G149300 Phaseolus vulgaris HOM05D005179 ORTHO05D006225 2.6e-13 80.1 54 51.9
VMungo0720G0860 Vigna mungo HOM05D005179 ORTHO05D006225 3.3e-13 79.7 58 53.4
BolC6t38030H Brassica oleracea HOM05D005179 ORTHO05D006225 4.4e-13 79.3 54 57.4
Ca_09769_v3 Cicer arietinum L. HOM05D005179 ORTHO05D006225 4.4e-13 79.3 52 59.6
Potri.004G022700 Populus trichocarpa HOM05D005179 ORTHO05D006225 4.4e-13 79.3 48 66.7
Atru.chr5.1383 Acer truncatum HOM05D005179 ORTHO05D006225 5.7e-13 79.0 222 38.3
C06p28620 Brassica napus HOM05D005179 ORTHO05D006225 5.7e-13 79.0 54 57.4
Lj1g0021337 Lotus japonicus HOM05D005179 ORTHO05D006225 5.7e-13 79.0 228 40.4
Lalb_Chr01g0020211 Lupinus albus HOM05D005179 ORTHO05D006225 9.7e-13 78.2 53 54.7
PGR044G1538 Punica granatum HOM05D005179 ORTHO05D006225 9.7e-13 78.2 55 52.7
A07p26240 Brassica napus HOM05D005179 ORTHO05D006225 1.3e-12 77.8 51 58.8
BraA07t30267Z Brassica rapa HOM05D005179 ORTHO05D006225 1.3e-12 77.8 51 58.8
ClCG09G006920 Citrullus lanatus HOM05D000257 ORTHO05D009070 1.3e-12 77.8 52 55.8
TWI59G0379 Tripterygium wilfordii HOM05D005179 ORTHO05D006225 1.3e-12 77.8 51 54.9
Haze_04736 Corylus avellana HOM05D005179 ORTHO05D006225 1.7e-12 77.4 227 38.3
MELO3C015854.2 Cucumis melo HOM05D005179 ORTHO05D006225 2.2e-12 77.0 54 59.3
Ah.15g091740 Amaranthus hybridus HOM05D005179 ORTHO05D006225 2.8e-12 76.6 49 57.1
ECA236G2709 Erigeron canadensis HOM05D005179 ORTHO05D006225 3.7e-12 76.3 52 57.7
CARHR173410 Cardamine hirsuta HOM05D005179 ORTHO05D006225 4.8e-12 75.9 51 56.9
Manes.01G209300 Manihot esculenta HOM05D005179 ORTHO05D006225 4.8e-12 75.9 222 46.4
arahy.Tifrunner.gnm1.ann1.AZF37F Arachis hypogaea HOM05D000257 ORTHO05D009070 6.3e-12 75.5 52 55.8
arahy.Tifrunner.gnm1.ann1.YN028F Arachis hypogaea HOM05D000257 ORTHO05D009070 6.3e-12 75.5 52 55.8
C04p30120 Brassica napus HOM05D005179 ORTHO05D006225 6.3e-12 75.5 54 53.7
Cfa006114 Carpinus fangiana HOM05D005179 ORTHO05D006225 6.3e-12 75.5 54 53.7
Eucgr.K03387 Eucalyptus grandis HOM05D005179 ORTHO05D006225 6.3e-12 75.5 59 47.5
C08p37810 Brassica napus HOM05D000257 ORTHO05D009070 8.2e-12 75.1 51 54.9
BolC8t51360H Brassica oleracea HOM05D000257 ORTHO05D009070 8.2e-12 75.1 51 54.9
COL.COLO4_09131 Corchorus olitorius HOM05D005179 ORTHO05D006225 8.2e-12 75.1 51 52.9
A09p54910 Brassica napus HOM05D000257 ORTHO05D009070 1.1e-11 74.7 51 54.9
BraA09t40901Z Brassica rapa HOM05D000257 ORTHO05D009070 1.1e-11 74.7 51 54.9
Nitab4.5_0002386g0020 Nicotiana tabacum HOM05D005179 ORTHO05D006225 1.1e-11 74.7 51 51.0
Sabra02G0167400 Salix brachista HOM05D005179 ORTHO05D006225 1.1e-11 74.7 49 57.1
Ah.08g213000 Amaranthus hybridus HOM05D005179 ORTHO05D006225 1.4e-11 74.3 49 55.1
Carub.0005s2976 Capsella rubella HOM05D005179 ORTHO05D006225 1.4e-11 74.3 54 51.9
TWI59G1208 Tripterygium wilfordii HOM05D005179 ORTHO05D006225 1.4e-11 74.3 59 47.5
A04p00290 Brassica napus HOM05D005179 ORTHO05D006225 1.8e-11 73.9 51 54.9
BolC4t24544H Brassica oleracea HOM05D005179 ORTHO05D006225 1.8e-11 73.9 51 54.9
BraA04t15748Z Brassica rapa HOM05D005179 ORTHO05D006225 1.8e-11 73.9 51 54.9
Dinv11251 Davidia involucrata HOM05D005179 ORTHO05D006225 1.8e-11 73.9 51 54.9
Sed0008634 Sechium edule HOM05D005179 ORTHO05D006225 1.8e-11 73.9 52 53.8
AL5G45930 Arabidopsis lyrata HOM05D005179 ORTHO05D006225 2.4e-11 73.6 54 51.9
AT3G63095 Arabidopsis thaliana HOM05D005179 ORTHO05D006225 2.4e-11 73.6 54 51.9
MSTRG.21570 Avicennia marina HOM05D005179 ORTHO05D006225 2.4e-11 73.6 51 51.0
Manes.05G074000 Manihot esculenta HOM05D005179 ORTHO05D006225 2.4e-11 73.6 226 45.6
CANSAT25G0479 Cannabis sativa HOM05D005179 ORTHO05D006225 3.1e-11 73.2 191 31.9
Zm00001eb017420 Zea mays HOM05D005179 ORTHO05D006225 3.1e-11 73.2 46 60.9
DCAR_018411 Daucus carota HOM05D005179 ORTHO05D006225 4.1e-11 72.8 52 51.9
Potri.014G139200 Populus trichocarpa HOM05D005179 ORTHO05D006225 4.1e-11 72.8 48 58.3
Sc24g0004150 Simmondsia chinensis HOM05D005179 ORTHO05D006225 4.1e-11 72.8 51 49.0
MSTRG.18220 Avicennia marina HOM05D005179 ORTHO05D006225 5.3e-11 72.4 57 49.1
CAN.G609.9 Capsicum annuum HOM05D005179 ORTHO05D006225 5.3e-11 72.4 51 52.9
DCAR_002746 Daucus carota HOM05D005179 ORTHO05D006225 5.3e-11 72.4 52 55.8
Solyc09g064900.1 Solanum lycopersicum HOM05D005179 ORTHO05D006225 5.3e-11 72.4 61 47.5
Rhsim13G0023300 Rhododendron simsii HOM05D005179 ORTHO05D006225 6.9e-11 72.0 222 37.8
Hma1.2p1_0628F.1_g191965 Hydrangea macrophylla HOM05D005179 ORTHO05D006225 9.1e-11 71.6 51 51.0
Sopen09g026600 Solanum pennellii HOM05D005179 ORTHO05D006225 9.1e-11 71.6 62 46.8
Cc01_g19710 Coffea canephora HOM05D005179 ORTHO05D006225 1.2e-10 71.2 53 50.9
Potri.002G215200 Populus trichocarpa HOM05D005179 ORTHO05D006225 1.2e-10 71.2 49 53.1
CiPaw.07G093600 Carya illinoinensis HOM05D005179 ORTHO05D006225 1.5e-10 70.9 204 44.6
THA.LOC104802228 Tarenaya hassleriana HOM05D005179 ORTHO05D006225 1.5e-10 70.9 48 54.2
Aqoxy5G00531 Aquilegia oxysepala HOM05D001530 ORTHO05D003676 2.0e-10 70.5 54 48.1
Manes.05G074200 Manihot esculenta HOM05D005179 ORTHO05D006225 2.0e-10 70.5 58 50.0
TAR636G3147 Trochodendron aralioides HOM05D005179 ORTHO05D006225 2.0e-10 70.5 47 53.2
Aa31LG10G16940 Aethionema arabicum HOM05D005179 ORTHO05D006225 2.6e-10 70.1 51 51.0
Nitab4.5_0001028g0210 Nicotiana tabacum HOM05D005179 ORTHO05D006225 2.6e-10 70.1 217 32.7
Zm00001eb394420 Zea mays HOM05D005179 ORTHO05D006225 2.6e-10 70.1 46 58.7
PGSC0003DMG400020123 Solanum tuberosum HOM05D005179 ORTHO05D006225 3.4e-10 69.7 53 45.3
Lalb_Chr25g0290231 Lupinus albus HOM05D005179 ORTHO05D006225 4.5e-10 69.3 233 46.8
THA.LOC104817549 Tarenaya hassleriana HOM05D005179 ORTHO05D006225 4.5e-10 69.3 48 52.1
Thecc.01G282700 Theobroma cacao HOM05D005179 ORTHO05D006225 5.9e-10 68.9 51 49.0
Zm00001eb329500 Zea mays HOM05D005179 ORTHO05D006225 5.9e-10 68.9 46 56.5
Os03g0357500 Oryza sativa ssp. japonica HOM05D005179 ORTHO05D006225 1.0e-09 68.2 46 54.3
Sed0008870 Sechium edule HOM05D005179 ORTHO05D006225 1.0e-09 68.2 52 48.1
GSVIVG01011106001 Vitis vinifera HOM05D005179 ORTHO05D006225 1.0e-09 68.2 57 42.1
Actinidia21103 Actinidia chinensis HOM05D000756 ORTHO05D000604 1.7e-09 67.4 51 45.1
Migut.D00272 Erythranthe guttata HOM05D005179 ORTHO05D006225 1.7e-09 67.4 51 49.0
Gohir.A12G005800 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.7e-09 67.4 51 49.0
Gohir.D12G005300 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.7e-09 67.4 51 49.0
Gorai.008G005200 Gossypium raimondii HOM05D005179 ORTHO05D006225 1.7e-09 67.4 51 49.0
Gorai.009G014800 Gossypium raimondii HOM05D005179 ORTHO05D006225 1.7e-09 67.4 51 49.0
PSO210G7214 Papaver somniferum HOM05D005179 ORTHO05D006225 1.7e-09 67.4 53 43.4
PSO832G0665 Papaver somniferum HOM05D005179 ORTHO05D006225 1.7e-09 67.4 53 43.4
SGA_v2.0_scaffold11G05800 Striga asiatica HOM05D005179 ORTHO05D006225 1.7e-09 67.4 54 46.3
SGA_v2.0_scaffold80G25940 Striga asiatica HOM05D005179 ORTHO05D006225 1.7e-09 67.4 53 47.2
Sc05g0004870 Simmondsia chinensis HOM05D005179 ORTHO05D006225 2.2e-09 67.0 51 49.0
Gohir.A08G069300 Gossypium hirsutum HOM05D005179 ORTHO05D006225 2.9e-09 66.6 54 40.7
Gohir.A11G121400 Gossypium hirsutum HOM05D005179 ORTHO05D006225 2.9e-09 66.6 51 45.1
Oeu015958.1 Olea europaea HOM05D005179 ORTHO05D006225 2.9e-09 66.6 58 43.1
Sopen02g023170 Solanum pennellii HOM05D005179 ORTHO05D006225 2.9e-09 66.6 53 43.4
unitig_8.g3720 Utricularia gibba HOM05D005179 ORTHO05D006225 2.9e-09 66.6 51 43.1
Gohir.D11G126500 Gossypium hirsutum HOM05D005179 ORTHO05D006225 3.8e-09 66.2 51 45.1
Gorai.007G135300 Gossypium raimondii HOM05D005179 ORTHO05D006225 3.8e-09 66.2 51 45.1
Manes.01G209200 Manihot esculenta HOM05D005179 ORTHO05D006225 3.8e-09 66.2 51 51.0
Os07g0655800 Oryza sativa ssp. japonica HOM05D005179 ORTHO05D006225 3.8e-09 66.2 58 48.3
SalBow4G1980 Salvia bowleyana HOM05D005179 ORTHO05D006225 3.8e-09 66.2 51 47.1
Duzib138G1054 Durio zibethinus HOM05D005179 ORTHO05D006225 6.5e-09 65.5 45 48.9
PSO447G0321 Papaver somniferum HOM05D005179 ORTHO05D006225 8.5e-09 65.1 51 45.1
ClCG07G000210 Citrullus lanatus HOM05D005179 ORTHO05D006225 1.1e-08 64.7 53 43.4
SGA_v2.0_scaffold258G45766 Striga asiatica HOM05D005179 ORTHO05D006225 1.1e-08 64.7 48 43.8
Aqoxy2G03259 Aquilegia oxysepala HOM05D005179 ORTHO05D006225 1.9e-08 63.9 52 46.2
CiPaw.08G103900 Carya illinoinensis HOM05D005179 ORTHO05D006225 1.9e-08 63.9 237 40.1
Gohir.D08G077500 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.9e-08 63.9 54 40.7
Gorai.004G082400 Gossypium raimondii HOM05D005179 ORTHO05D006225 1.9e-08 63.9 54 40.7
SalBow6G3683 Salvia bowleyana HOM05D005179 ORTHO05D006225 1.9e-08 63.9 51 43.1
Sed0002169 Sechium edule HOM05D005179 ORTHO05D006225 1.9e-08 63.9 48 47.9
PSO210G2426 Papaver somniferum HOM05D005179 ORTHO05D006225 2.5e-08 63.5 49 44.9
Nn1g02158 Nelumbo nucifera HOM05D005179 ORTHO05D006225 3.2e-08 63.2 48 39.6
CSS0035012 Camellia sinensis var. sinensis HOM05D005179 ORTHO05D006225 5.5e-08 62.4 51 45.1
Cpa.g.sc64.166 Carica papaya HOM05D005179 ORTHO05D006225 5.5e-08 62.4 46 47.8
Rhsim01G0275800 Rhododendron simsii HOM05D000756 ORTHO05D000604 5.5e-08 62.4 48 47.9
Nn4g26188 Nelumbo nucifera HOM05D005179 ORTHO05D006225 9.4e-08 61.6 46 45.7
Migut.N02158 Erythranthe guttata HOM05D005179 ORTHO05D006225 1.2e-07 61.2 45 51.1
ATR0626G310 Amborella trichopoda HOM05D005179 ORTHO05D006225 2.1e-07 60.5 47 48.9
Gohir.D08G077600 Gossypium hirsutum HOM05D005179 ORTHO05D006225 3.6e-07 59.7 54 37.0
Gorai.004G082500 Gossypium raimondii HOM05D005179 ORTHO05D006225 1.4e-06 57.8 54 37.0
Actinidia00740 Actinidia chinensis HOM05D005179 ORTHO05D006225 1.8e-06 57.4 42 50.0
QL12p022365 Quercus lobata HOM05D005179 ORTHO05D006225 8.8e-06 55.1 46 47.8
vmacro14931 Vaccinium macrocarpon HOM05D001530 ORTHO05D003676 8.8e-06 55.1 54 44.4


User provided reference genes

Program Settings