Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g23150 Fragaria vesca HOM05D004770 ORTHO05D005572 1.2e-106 389.8 197 100.0
FAN20G2343 Fragaria x ananassa HOM05D004770 ORTHO05D005572 3.6e-82 308.5 197 83.8
FAN27G1754 Fragaria x ananassa HOM05D004770 ORTHO05D005572 8.1e-82 307.4 197 83.2
RcHm_v2.0_Chr6g0290401 Rosa chinensis HOM05D004770 ORTHO05D005572 9.9e-80 300.4 197 82.2
MD11G1280900 Malus domestica HOM05D004770 ORTHO05D005572 3.6e-74 282.0 197 77.2
Prupe.8G236800 Prunus persica HOM05D004770 ORTHO05D005572 2.4e-73 279.3 153 91.5
Hma1.2p1_2357F.1_g320590 Hydrangea macrophylla HOM05D004770 ORTHO05D005572 4.4e-72 275.0 197 74.6
Sabra05G0162600 Salix brachista HOM05D004770 ORTHO05D005572 3.8e-71 271.9 197 74.1
Potri.002G049900 Populus trichocarpa HOM05D004770 ORTHO05D005572 1.4e-70 270.0 197 73.6
Thecc.01G273700 Theobroma cacao HOM05D004770 ORTHO05D005572 1.9e-70 269.6 197 73.6
TWI39G0629 Tripterygium wilfordii HOM05D004770 ORTHO05D005572 1.9e-70 269.6 197 72.6
COL.COLO4_09057 Corchorus olitorius HOM05D001769 ORTHO05D001695 4.2e-70 268.5 197 73.1
Eucgr.G02085 Eucalyptus grandis HOM05D004770 ORTHO05D005572 4.2e-70 268.5 197 73.1
Potri.005G212800 Populus trichocarpa HOM05D004770 ORTHO05D005572 4.2e-70 268.5 197 73.1
Atru.chr5.1488 Acer truncatum HOM05D004770 ORTHO05D005572 7.1e-70 267.7 197 72.6
CSS0005681 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 9.3e-70 267.3 197 74.6
Oeu025750.1 Olea europaea HOM05D004770 ORTHO05D005572 1.6e-69 266.5 197 73.6
Duzib138G1187 Durio zibethinus HOM05D004770 ORTHO05D005572 2.1e-69 266.2 197 72.6
Manes.01G205200 Manihot esculenta HOM05D004770 ORTHO05D005572 2.1e-69 266.2 197 73.1
CiPaw.07G089000 Carya illinoinensis HOM05D004770 ORTHO05D005572 2.7e-69 265.8 197 72.6
CANSAT80G2828 Cannabis sativa HOM05D004770 ORTHO05D005572 3.5e-69 265.4 197 72.1
vmacro02598 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 3.5e-69 265.4 198 73.7
Sabra02G0040800 Salix brachista HOM05D004770 ORTHO05D005572 4.6e-69 265.0 197 72.1
Cfa006174 Carpinus fangiana HOM05D004770 ORTHO05D005572 6.0e-69 264.6 197 71.1
Dinv34783 Davidia involucrata HOM05D004770 ORTHO05D005572 6.0e-69 264.6 197 72.6
PGR031G3940 Punica granatum HOM05D004770 ORTHO05D005572 7.8e-69 264.2 197 71.1
CSS0032403 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 1.0e-68 263.8 197 74.1
Lj1A49T61 Lonicera japonica HOM05D004770 ORTHO05D005572 1.3e-68 263.5 197 72.6
Nn1g02388 Nelumbo nucifera HOM05D004770 ORTHO05D005572 1.3e-68 263.5 197 72.1
Nn6g34126 Nelumbo nucifera HOM05D004770 ORTHO05D005572 1.3e-68 263.5 197 72.1
arahy.Tifrunner.gnm1.ann1.RIN6C8 Arachis hypogaea HOM05D004770 ORTHO05D005572 2.3e-68 262.7 197 71.1
arahy.Tifrunner.gnm1.ann1.W9SXTW Arachis hypogaea HOM05D004770 ORTHO05D005572 2.3e-68 262.7 197 71.1
arahy.Tifrunner.gnm1.ann1.YE39MU Arachis hypogaea HOM05D004770 ORTHO05D005572 2.3e-68 262.7 197 71.1
Haze_04673 Corylus avellana HOM05D004770 ORTHO05D005572 3.0e-68 262.3 195 71.3
Glyma.17G044400 Glycine max HOM05D004770 ORTHO05D005572 3.9e-68 261.9 197 71.6
Actinidia24914 Actinidia chinensis HOM05D004770 ORTHO05D005572 6.6e-68 261.2 197 71.1
ECA248G2232 Erigeron canadensis HOM05D004770 ORTHO05D005572 6.6e-68 261.2 197 70.6
Solyc06g084160.4 Solanum lycopersicum HOM05D004770 ORTHO05D005572 6.6e-68 261.2 197 71.1
Ciclev10022091m.g Citrus clementina HOM05D004770 ORTHO05D005572 8.7e-68 260.8 197 70.6
Lalb_Chr18g0051481 Lupinus albus HOM05D004770 ORTHO05D005572 8.7e-68 260.8 197 70.1
GSVIVG01001190001 Vitis vinifera HOM05D004770 ORTHO05D005572 8.7e-68 260.8 197 72.1
Cc01_g06090 Coffea canephora HOM05D004770 ORTHO05D005572 1.1e-67 260.4 197 70.1
DCAR_012498 Daucus carota HOM05D004770 ORTHO05D005572 1.1e-67 260.4 197 71.6
Nitab4.5_0000759g0280 Nicotiana tabacum HOM05D004770 ORTHO05D005572 1.5e-67 260.0 197 71.1
Sopen06g035540 Solanum pennellii HOM05D004770 ORTHO05D005572 1.5e-67 260.0 197 71.1
TAR362G0723 Trochodendron aralioides HOM05D004770 ORTHO05D005572 1.5e-67 260.0 197 71.1
Phvul.007G249400 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 1.9e-67 259.6 197 70.1
PGSC0003DMG400020135 Solanum tuberosum HOM05D004770 ORTHO05D005572 1.9e-67 259.6 197 70.6
Rhsim13G0027500 Rhododendron simsii HOM05D004770 ORTHO05D005572 2.5e-67 259.2 153 85.6
arahy.Tifrunner.gnm1.ann1.S84LE1 Arachis hypogaea HOM05D004770 ORTHO05D005572 4.3e-67 258.5 197 70.1
Gorai.008G003100 Gossypium raimondii HOM05D004770 ORTHO05D005572 4.3e-67 258.5 197 70.6
Nitab4.5_0000208g0100 Nicotiana tabacum HOM05D004770 ORTHO05D005572 4.3e-67 258.5 197 69.5
QL01p010878 Quercus lobata HOM05D004770 ORTHO05D005572 4.3e-67 258.5 196 69.9
SalBow7G1168 Salvia bowleyana HOM05D004770 ORTHO05D005572 7.3e-67 257.7 197 69.0
BcaNung02803 Brassica carinata HOM05D004770 ORTHO05D005572 9.6e-67 257.3 197 69.5
A06p36610 Brassica napus HOM05D004770 ORTHO05D005572 9.6e-67 257.3 197 69.0
BraA06t26586Z Brassica rapa HOM05D004770 ORTHO05D005572 9.6e-67 257.3 197 69.0
Thhalv10004885m.g Eutrema salsugineum HOM05D004770 ORTHO05D005572 9.6e-67 257.3 197 69.0
Gohir.D12G003300 Gossypium hirsutum HOM05D004770 ORTHO05D005572 1.3e-66 256.9 197 70.1
MBI02_g08255_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 1.3e-66 256.9 197 70.1
Solyc08g005140.3 Solanum lycopersicum HOM05D004770 ORTHO05D005572 1.3e-66 256.9 197 70.1
Lj3A581T22 Lonicera japonica HOM05D004770 ORTHO05D005572 2.1e-66 256.1 197 70.6
AT5G26110 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 2.8e-66 255.8 197 69.0
BcaNung03978 Brassica carinata HOM05D004770 ORTHO05D005572 2.8e-66 255.8 197 68.5
Gohir.A12G003600 Gossypium hirsutum HOM05D004770 ORTHO05D005572 3.6e-66 255.4 197 70.1
Aqoxy2G03435 Aquilegia oxysepala HOM05D004770 ORTHO05D005572 4.8e-66 255.0 197 69.5
CAN.G1549.14 Capsicum annuum HOM05D004770 ORTHO05D005572 4.8e-66 255.0 197 69.5
HanXRQChr08g0213371 Helianthus annuus HOM05D004770 ORTHO05D005572 4.8e-66 255.0 197 68.5
vmacro14906 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 4.8e-66 255.0 154 83.8
Carub.0005s0602 Capsella rubella HOM05D004770 ORTHO05D005572 6.2e-66 254.6 197 67.5
Lj6g0011383 Lotus japonicus HOM05D004770 ORTHO05D005572 6.2e-66 254.6 197 70.1
Nitab4.5_0004355g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 8.1e-66 254.2 154 83.8
C07p41870 Brassica napus HOM05D004770 ORTHO05D005572 1.1e-65 253.8 159 79.2
CAN.G1549.26 Capsicum annuum HOM05D004770 ORTHO05D005572 1.1e-65 253.8 197 69.0
VMungo0540G0250 Vigna mungo HOM05D004770 ORTHO05D005572 1.1e-65 253.8 197 69.5
AL2G11930 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 1.4e-65 253.4 197 67.5
CARHR187390 Cardamine hirsuta HOM05D004770 ORTHO05D005572 1.4e-65 253.4 197 67.5
Glyma.18G056100 Glycine max HOM05D004770 ORTHO05D005572 1.4e-65 253.4 197 70.6
Sp2g21620 Schrenkiella parvula HOM05D004770 ORTHO05D005572 1.4e-65 253.4 197 67.5
PGSC0003DMG400017838 Solanum tuberosum HOM05D004770 ORTHO05D005572 1.4e-65 253.4 156 82.1
Migut.N02033 Erythranthe guttata HOM05D004770 ORTHO05D005572 1.8e-65 253.1 197 69.0
MBI15_g39353_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 1.8e-65 253.1 197 69.0
PSO832G1010 Papaver somniferum HOM05D004770 ORTHO05D005572 1.8e-65 253.1 197 68.5
Phvul.006G075100 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 2.4e-65 252.7 197 69.5
Carub.0006s2388 Capsella rubella HOM05D004770 ORTHO05D005572 3.1e-65 252.3 197 67.5
Lj3g0010058 Lotus japonicus HOM05D004770 ORTHO05D005572 4.0e-65 251.9 197 69.0
Sopen08g001150 Solanum pennellii HOM05D004770 ORTHO05D005572 5.3e-65 251.5 197 69.0
Lsat_1_v5_gn_5_186200 Lactuca sativa HOM05D004770 ORTHO05D005572 6.9e-65 251.1 194 69.1
Aa31LG10G17080 Aethionema arabicum HOM05D004770 ORTHO05D005572 9.0e-65 250.8 197 67.0
Cpa.g.sc41.63 Carica papaya HOM05D004770 ORTHO05D005572 9.0e-65 250.8 156 83.3
THA.LOC104817561 Tarenaya hassleriana HOM05D004770 ORTHO05D005572 9.0e-65 250.8 197 67.5
SalBow4G2779 Salvia bowleyana HOM05D004770 ORTHO05D005572 1.5e-64 250.0 196 67.3
unitig_0.g135 Utricularia gibba HOM05D004770 ORTHO05D005572 1.5e-64 250.0 154 79.9
Ca_15021_v3 Cicer arietinum L. HOM05D004770 ORTHO05D005572 2.0e-64 249.6 196 68.4
SGA_v2.0_scaffold1G00513 Striga asiatica HOM05D004770 ORTHO05D005572 2.0e-64 249.6 197 67.5
Actinidia00788 Actinidia chinensis HOM05D004770 ORTHO05D005572 2.6e-64 249.2 174 77.0
Medtr3g465790 Medicago truncatula HOM05D004770 ORTHO05D005572 4.4e-64 248.4 196 68.9
ClCG03G016560 Citrullus lanatus HOM05D004770 ORTHO05D005572 5.8e-64 248.1 197 67.5
DCAR_002713 Daucus carota HOM05D004770 ORTHO05D005572 5.8e-64 248.1 154 81.2
AUR62012543 Chenopodium quinoa HOM05D004770 ORTHO05D005572 7.6e-64 247.7 197 66.5
MELO3C015367.2 Cucumis melo HOM05D004770 ORTHO05D005572 7.6e-64 247.7 197 67.0
VMungo0720G0347 Vigna mungo HOM05D004770 ORTHO05D005572 1.7e-63 246.5 154 79.9
AL2G11990 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 3.8e-63 245.4 153 78.4
CsaV3_1G039420 Cucumis sativus L. HOM05D004770 ORTHO05D005572 4.9e-63 245.0 197 66.0
Sp5g00290 Schrenkiella parvula HOM05D004770 ORTHO05D005572 6.4e-63 244.6 197 66.0
HPP92_017651 Vanilla planifolia HOM05D004770 ORTHO05D005572 6.4e-63 244.6 197 65.5
PSO170G2661 Papaver somniferum HOM05D004770 ORTHO05D005572 1.1e-62 243.8 197 66.5
QL01p011010 Quercus lobata HOM05D004770 ORTHO05D005572 1.1e-62 243.8 226 60.6
AUR62032312 Chenopodium quinoa HOM05D004770 ORTHO05D005572 1.4e-62 243.4 197 65.5
EL10Ac5g10525 Beta vulgaris HOM05D004770 ORTHO05D005572 1.9e-62 243.0 197 65.5
TPR.G25688 Trifolium pratense HOM05D004770 ORTHO05D005572 1.9e-62 243.0 166 75.3
ATR0665G226 Amborella trichopoda HOM05D004770 ORTHO05D005572 2.4e-62 242.7 153 79.1
Migut.D00330 Erythranthe guttata HOM05D004770 ORTHO05D005572 4.2e-62 241.9 196 66.3
Zm00001eb222890 Zea mays HOM05D004770 ORTHO05D005572 5.4e-62 241.5 197 65.5
Sed0021970 Sechium edule HOM05D004770 ORTHO05D005572 7.1e-62 241.1 196 64.8
BolC7t44719H Brassica oleracea HOM05D004770 ORTHO05D005572 2.1e-61 239.6 181 69.6
SGA_v2.0_scaffold80G25747 Striga asiatica HOM05D004770 ORTHO05D005572 1.1e-59 233.8 150 78.0
SEGI_22603 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 2.8e-58 229.2 198 62.1
Hund02843 Selenicereus undatus HOM05D004770 ORTHO05D005572 3.6e-58 228.8 159 70.4
Psat2g184920 Pisum sativum HOM05D004770 ORTHO05D005572 8.1e-58 227.6 234 56.8
PSO210G1988 Papaver somniferum HOM05D004770 ORTHO05D005572 3.1e-57 225.7 197 64.0
SEGI_19127 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 1.5e-56 223.4 196 60.7
Peaxi162Scf00783g00122 Petunia axillaris HOM05D004770 ORTHO05D005572 1.2e-53 213.8 129 82.2
Lj2g0018175 Lotus japonicus HOM05D004770 ORTHO05D005572 7.9e-53 211.1 134 79.9
QL12p020786 Quercus lobata HOM05D004770 ORTHO05D005572 6.7e-52 208.0 129 80.6
Nitab4.5_0006132g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 1.8e-49 199.9 134 75.4
AagrBONN_evm.TU.Sc2ySwM_362.2288 Anthoceros agrestis HOM05D004770 ORTHO05D005572 2.4e-49 199.5 197 55.8
Mapoly0133s0052 Marchantia polymorpha HOM05D004770 ORTHO05D005572 6.9e-49 198.0 199 55.3
Pp3c15_20330 Physcomitrium patens HOM05D004770 ORTHO05D005572 3.2e-46 189.1 197 52.3
SMO358G0317 Selaginella moellendorffii HOM05D004770 ORTHO05D005572 1.6e-45 186.8 197 53.3
CSS0010466 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 7.6e-40 167.9 167 59.3
Manes.05G078700 Manihot esculenta HOM05D004770 ORTHO05D005572 7.6e-40 167.9 197 53.8
CBR_g40454 Chara braunii HOM05D004770 ORTHO05D005572 1.4e-38 163.7 218 43.6
Lsat_1_v5_gn_3_83521 Lactuca sativa HOM05D004770 ORTHO05D005572 1.9e-35 153.3 103 74.8
Zm00001eb031460 Zea mays HOM05D004770 ORTHO05D005572 7.4e-35 151.4 131 58.8
Actinidia09114 Actinidia chinensis HOM05D004770 ORTHO05D005572 1.3e-34 150.6 117 68.4
MCO10G359 Micromonas commoda HOM05D004770 ORTHO05D005572 2.2e-34 149.8 198 43.9
Psat6g025640 Pisum sativum HOM05D004770 ORTHO05D005572 1.1e-33 147.5 94 76.6
Sc05g0001180 Simmondsia chinensis HOM05D004770 ORTHO05D005572 7.2e-30 134.8 92 70.7
SHI22269 Sapria himalayana HOM05D004770 ORTHO05D005572 2.7e-29 132.9 92 70.7
Zm00001eb432290 Zea mays HOM05D004770 ORTHO05D005572 5.7e-27 125.2 94 67.0
Glyma.02G191000 Glycine max HOM05D004770 ORTHO05D005572 1.8e-25 120.2 137 54.7
Actinidia21133 Actinidia chinensis HOM05D004770 ORTHO05D005572 4.1e-25 119.0 101 63.4
TAR633G0687 Trochodendron aralioides HOM05D004770 ORTHO05D005572 2.6e-16 89.7 51 82.4
RcHm_v2.0_Chr3g0476231 Rosa chinensis HOM05D004770 ORTHO05D005572 1.0e-15 87.8 51 86.3
CDE04G0604 Ceratophyllum demersum HOM05D004770 ORTHO05D005572 1.1e-14 84.3 61 68.9
TAR636G2941 Trochodendron aralioides HOM05D004770 ORTHO05D005572 2.5e-14 83.2 100 51.0
GSVIVG01020385001 Vitis vinifera HOM05D004770 ORTHO05D005572 2.8e-10 69.7 116 40.5
BcaC03g17841 Brassica carinata HOM05D004770 ORTHO05D005572 4.8e-10 68.9 70 51.4
Cre06.g306800 Chlamydomonas reinhardtii HOM05D004770 ORTHO05D005572 4.8e-10 68.9 205 26.3
GSVIVG01017585001 Vitis vinifera HOM05D004770 ORTHO05D005572 5.0e-07 58.9 63 54.0
RcHm_v2.0_Chr5g0022281 Rosa chinensis HOM05D042667 ORTHO05D005572 2.5e-06 56.6 53 64.2
RcHm_v2.0_Chr5g0022321 Rosa chinensis HOM05D042667 ORTHO05D005572 2.5e-06 56.6 53 64.2


User provided reference genes

Program Settings