Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g22511 Fragaria vesca HOM05D006249 ORTHO05D007643 5.2e-176 620.9 312 100.0
RcHm_v2.0_Chr6g0289561 Rosa chinensis HOM05D006249 ORTHO05D007643 8.9e-160 567.0 312 92.3
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 8.7e-147 523.9 339 82.6
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 8.7e-147 523.9 339 82.6
Prupe.8G232100 Prunus persica HOM05D006249 ORTHO05D007643 2.5e-138 495.7 313 79.2
MD05G1205700 Malus domestica HOM05D006249 ORTHO05D007643 4.0e-136 488.4 312 77.6
QL12p042687 Quercus lobata HOM05D006249 ORTHO05D007643 1.8e-128 463.0 312 74.4
Haze_24532 Corylus avellana HOM05D006249 ORTHO05D007643 6.9e-128 461.1 313 73.8
CiPaw.03G257400 Carya illinoinensis HOM05D006249 ORTHO05D007643 2.6e-127 459.1 314 73.9
Ciclev10021257m.g Citrus clementina HOM05D006249 ORTHO05D007643 2.7e-124 449.1 314 72.0
CSS0046504 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 1.0e-123 447.2 317 70.7
ClCG01G001850 Citrullus lanatus HOM05D006249 ORTHO05D007643 1.3e-123 446.8 312 71.5
COL.COLO4_06075 Corchorus olitorius HOM05D006249 ORTHO05D007643 3.9e-123 445.3 312 69.2
CsaV3_5G002000 Cucumis sativus L. HOM05D006249 ORTHO05D007643 8.7e-123 444.1 312 70.8
Cpa.g.sc52.92 Carica papaya HOM05D006249 ORTHO05D007643 3.3e-122 442.2 311 70.4
MELO3C005753.2 Cucumis melo HOM05D006249 ORTHO05D007643 4.3e-122 441.8 312 71.2
Manes.05G084500 Manihot esculenta HOM05D006249 ORTHO05D007643 5.7e-122 441.4 312 70.8
Potri.005G218700 Populus trichocarpa HOM05D006249 ORTHO05D007643 1.6e-121 439.9 312 71.2
GSVIVG01000723001 Vitis vinifera HOM05D006249 ORTHO05D007643 3.1e-120 435.6 314 69.7
TAR362G0606 Trochodendron aralioides HOM05D006249 ORTHO05D007643 4.5e-119 431.8 313 71.6
Gohir.A11G127400 Gossypium hirsutum HOM05D006249 ORTHO05D007643 1.0e-118 430.6 311 68.2
CANSAT01G0091 Cannabis sativa HOM05D006249 ORTHO05D007643 5.0e-118 428.3 300 71.0
Peaxi162Scf00049g00209 Petunia axillaris HOM05D006249 ORTHO05D007643 5.0e-118 428.3 291 71.1
Gorai.007G142000 Gossypium raimondii HOM05D006249 ORTHO05D007643 6.5e-118 427.9 311 67.8
Thecc.01G267400 Theobroma cacao HOM05D006249 ORTHO05D007643 1.1e-117 427.2 312 66.3
Sopen09g027650 Solanum pennellii HOM05D006249 ORTHO05D007643 1.9e-117 426.4 311 68.8
Dinv34569 Davidia involucrata HOM05D006249 ORTHO05D007643 2.5e-117 426.0 312 69.2
Gohir.D11G132800 Gossypium hirsutum HOM05D006249 ORTHO05D007643 2.5e-117 426.0 311 67.2
Duzib138G0419 Durio zibethinus HOM05D006249 ORTHO05D007643 7.2e-117 424.5 311 68.5
Solyc09g065860.3 Solanum lycopersicum HOM05D006249 ORTHO05D007643 7.2e-117 424.5 311 68.5
PGR044G2488 Punica granatum HOM05D006249 ORTHO05D007643 1.6e-116 423.3 310 67.1
CSS0032391 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 2.6e-114 416.0 298 69.5
Eucgr.K03312 Eucalyptus grandis HOM05D006249 ORTHO05D007643 3.3e-114 415.6 261 75.9
vmacro14872 Vaccinium macrocarpon HOM05D006249 ORTHO05D007643 3.7e-113 412.1 296 69.3
CAN.G1259.4 Capsicum annuum HOM05D006249 ORTHO05D007643 6.3e-113 411.4 310 66.5
Migut.D00374 Erythranthe guttata HOM05D006249 ORTHO05D007643 5.3e-112 408.3 311 65.6
Rhsim01G0269700 Rhododendron simsii HOM05D006249 ORTHO05D007643 5.3e-112 408.3 328 64.9
ECA248G0032 Erigeron canadensis HOM05D006249 ORTHO05D007643 1.3e-110 403.7 314 62.7
Atru.chr5.1566 Acer truncatum HOM05D006249 ORTHO05D007643 2.9e-110 402.5 232 81.9
Atru.chr5.1568 Acer truncatum HOM05D006249 ORTHO05D007643 2.9e-110 402.5 232 81.9
Carub.0001s0216 Capsella rubella HOM05D006249 ORTHO05D007643 3.8e-110 402.1 314 64.6
Sc17g0000990 Simmondsia chinensis HOM05D006249 ORTHO05D007643 3.8e-110 402.1 246 76.0
Cc01_g18850 Coffea canephora HOM05D006249 ORTHO05D007643 5.0e-110 401.7 319 62.7
Nn1g02571 Nelumbo nucifera HOM05D006249 ORTHO05D007643 8.5e-110 401.0 312 66.3
Lj1g0022179 Lotus japonicus HOM05D006249 ORTHO05D007643 1.9e-109 399.8 311 65.9
A10p01650 Brassica napus HOM05D006249 ORTHO05D007643 4.2e-109 398.7 313 64.5
BraA10t42442Z Brassica rapa HOM05D006249 ORTHO05D007643 4.2e-109 398.7 313 64.2
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 1.6e-108 396.7 312 64.7
Aa31LG1G9510 Aethionema arabicum HOM05D006249 ORTHO05D007643 3.6e-108 395.6 248 73.8
BcaC07g42289 Brassica carinata HOM05D006249 ORTHO05D007643 3.6e-108 395.6 314 64.0
BolC5t28944H Brassica oleracea HOM05D006249 ORTHO05D007643 3.6e-108 395.6 314 64.0
AT1G03030 Arabidopsis thaliana HOM05D006249 ORTHO05D007643 4.7e-108 395.2 248 73.4
C05p01650 Brassica napus HOM05D006249 ORTHO05D007643 7.9e-108 394.4 249 72.7
Glyma.19G161200 Glycine max HOM05D006249 ORTHO05D007643 7.9e-108 394.4 312 65.1
Nitab4.5_0001556g0120 Nicotiana tabacum HOM05D006249 ORTHO05D007643 7.9e-108 394.4 291 67.0
THA.LOC104801257 Tarenaya hassleriana HOM05D006249 ORTHO05D007643 1.0e-107 394.0 316 63.0
Hund09572 Selenicereus undatus HOM05D006249 ORTHO05D007643 2.3e-107 392.9 289 66.1
Medtr7g096100 Medicago truncatula HOM05D006249 ORTHO05D007643 1.5e-106 390.2 315 62.9
HanXRQChr01g0006841 Helianthus annuus HOM05D006249 ORTHO05D007643 3.3e-106 389.0 314 61.5
PGSC0003DMG400019301 Solanum tuberosum HOM05D006249 ORTHO05D007643 5.7e-106 388.3 279 67.7
CARHR002370 Cardamine hirsuta HOM05D006249 ORTHO05D007643 9.7e-106 387.5 292 64.4
Lsat_1_v5_gn_5_186740 Lactuca sativa HOM05D006249 ORTHO05D007643 1.7e-105 386.7 251 71.7
Psat3g061040 Pisum sativum HOM05D006249 ORTHO05D007643 1.7e-105 386.7 316 61.7
MBI04_g06851_MAGBIO Magnolia biondii HOM05D006249 ORTHO05D007643 2.2e-105 386.3 316 62.3
Oeu018173.1 Olea europaea HOM05D006249 ORTHO05D007643 3.7e-105 385.6 312 64.7
TPR.G5717 Trifolium pratense HOM05D006249 ORTHO05D007643 3.7e-105 385.6 282 66.3
Thhalv10008317m.g Eutrema salsugineum HOM05D006249 ORTHO05D007643 4.8e-105 385.2 286 64.7
AUR62011941 Chenopodium quinoa HOM05D006249 ORTHO05D007643 4.1e-104 382.1 311 62.4
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 5.3e-104 381.7 248 73.0
arahy.Tifrunner.gnm1.ann1.EN4NAA Arachis hypogaea HOM05D006249 ORTHO05D007643 1.6e-103 380.2 312 62.8
Lj2C1159G1 Lonicera japonica HOM05D006249 ORTHO05D007643 2.6e-103 379.4 312 61.5
AL1G12480 Arabidopsis lyrata HOM05D006249 ORTHO05D007643 3.5e-103 379.0 232 75.9
MSTRG.21512 Avicennia marina HOM05D006249 ORTHO05D007643 3.5e-103 379.0 310 62.3
arahy.Tifrunner.gnm1.ann1.3ZGG11 Arachis hypogaea HOM05D006249 ORTHO05D007643 4.5e-103 378.6 312 62.8
Sabra05G0167700 Salix brachista HOM05D005019 ORTHO05D006625 1.7e-102 376.7 312 65.1
Sed0010412 Sechium edule HOM05D006249 ORTHO05D007643 5.5e-101 371.7 274 69.3
SalBow4G2323 Salvia bowleyana HOM05D006249 ORTHO05D007643 1.2e-100 370.5 295 62.4
Lalb_Chr25g0290111 Lupinus albus HOM05D006249 ORTHO05D007643 6.1e-100 368.2 251 69.7
Aqoxy2G03531 Aquilegia oxysepala HOM05D006249 ORTHO05D007643 8.0e-100 367.9 271 66.4
TWI18G0435 Tripterygium wilfordii HOM05D006249 ORTHO05D007643 1.2e-98 364.0 285 66.0
Nitab4.5_0000187g0200 Nicotiana tabacum HOM05D006249 ORTHO05D007643 4.4e-98 362.1 230 74.3
ATR0665G572 Amborella trichopoda HOM05D006249 ORTHO05D007643 6.3e-97 358.2 271 63.8
HPP92_012490 Vanilla planifolia HOM05D006249 ORTHO05D007643 7.0e-96 354.8 315 57.1
Zm00001eb135540 Zea mays HOM05D006249 ORTHO05D007643 2.0e-95 353.2 255 66.7
CDE06G0138 Ceratophyllum demersum HOM05D006249 ORTHO05D007643 5.9e-95 351.7 278 62.2
Os12g0601200 Oryza sativa ssp. japonica HOM05D006249 ORTHO05D007643 2.7e-92 342.8 251 64.9
PSO832G1981 Papaver somniferum HOM05D006249 ORTHO05D007643 4.7e-92 342.0 321 57.9
BcaC07g42286 Brassica carinata HOM05D006249 ORTHO05D007643 4.0e-91 339.0 249 65.1
PSO210G4763 Papaver somniferum HOM05D006249 ORTHO05D007643 6.8e-91 338.2 292 60.6
Ah.02g111470 Amaranthus hybridus HOM05D006249 ORTHO05D007643 1.8e-88 330.1 288 59.4
AUR62032256 Chenopodium quinoa HOM05D006249 ORTHO05D007643 3.0e-83 312.8 311 55.3
RcHm_v2.0_Chr4g0397901 Rosa chinensis HOM05D006249 ORTHO05D007643 4.5e-79 298.9 177 85.9
Mapoly0096s0074 Marchantia polymorpha HOM05D006249 ORTHO05D007643 1.7e-78 297.0 247 58.7
Phvul.001G156700 Phaseolus vulgaris HOM05D006249 ORTHO05D007643 6.1e-76 288.5 252 59.9
BcaC07g42292 Brassica carinata HOM05D006249 ORTHO05D007643 5.2e-75 285.4 263 56.3
Medtr4g076080 Medicago truncatula HOM05D006249 ORTHO05D007643 2.6e-74 283.1 300 50.7
Actinidia21156 Actinidia chinensis HOM05D006249 ORTHO05D007643 5.7e-74 282.0 256 57.4
Pp3c17_16800 Physcomitrium patens HOM05D006249 ORTHO05D007643 7.5e-74 281.6 333 47.7
unitig_0.g1129 Utricularia gibba HOM05D006249 ORTHO05D007643 2.0e-71 273.5 191 68.1
AagrBONN_evm.TU.Sc2ySwM_228.3891 Anthoceros agrestis HOM05D006249 ORTHO05D007643 2.0e-66 256.9 254 52.4
EL10Ac5g10475 Beta vulgaris HOM05D006249 ORTHO05D007643 7.5e-66 255.0 151 77.5
SEGI_12640 Sequoiadendron giganteum HOM05D006249 ORTHO05D007643 8.3e-65 251.5 174 63.8
SMO358G0282 Selaginella moellendorffii HOM05D000331 ORTHO05D002018 8.6e-54 214.9 173 61.3
Cre02.g101000 Chlamydomonas reinhardtii HOM05D006249 ORTHO05D007643 1.1e-48 198.0 271 39.9
arahy.Tifrunner.gnm1.ann1.U7WVQR Arachis hypogaea HOM05D006249 ORTHO05D007643 2.5e-45 186.8 261 44.8
MCO14G208 Micromonas commoda HOM05D006249 ORTHO05D007643 8.9e-43 178.3 245 40.4
Oeu018171.1 Olea europaea HOM05D006249 ORTHO05D007643 2.9e-41 173.3 170 59.4
Sp1g02020 Schrenkiella parvula HOM05D006249 ORTHO05D007643 2.3e-38 163.7 126 63.5
CBR_g19145 Chara braunii HOM05D006249 ORTHO05D007643 3.0e-38 163.3 182 48.9
Ca_15970_v3 Cicer arietinum L. HOM05D006249 ORTHO05D007643 9.3e-32 141.7 111 59.5
Medtr8g064430 Medicago truncatula HOM05D006249 ORTHO05D007643 1.6e-31 141.0 112 61.6
Hund30725 Selenicereus undatus HOM05D006249 ORTHO05D007643 7.9e-31 138.7 99 67.7
Glyma.03G158766 Glycine max HOM05D006249 ORTHO05D007643 1.1e-29 134.8 94 69.1
Hund30696 Selenicereus undatus HOM05D006249 ORTHO05D007643 4.8e-28 129.4 98 64.3
Cfa022768 Carpinus fangiana HOM05D006249 ORTHO05D007643 2.9e-25 120.2 150 42.0
PRCOL_00003971 Prasinoderma coloniale HOM05D006249 ORTHO05D007643 2.9e-25 120.2 178 41.0
arahy.Tifrunner.gnm1.ann1.FBQK8B Arachis hypogaea HOM05D006249 ORTHO05D007643 3.8e-25 119.8 125 51.2
arahy.Tifrunner.gnm1.ann1.AHQ53Z Arachis hypogaea HOM05D006249 ORTHO05D007643 1.1e-24 118.2 119 53.8
Glyma.03G158832 Glycine max HOM05D006249 ORTHO05D007643 4.8e-20 102.8 63 76.2
CSS0005124 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 6.2e-20 102.4 58 82.8
SHI29847 Sapria himalayana HOM05D006249 ORTHO05D007643 8.2e-20 102.1 137 42.3
SHI34902 Sapria himalayana HOM05D006249 ORTHO05D007643 6.9e-19 99.0 142 43.0
SHI29011 Sapria himalayana HOM05D006249 ORTHO05D007643 1.5e-13 81.3 202 32.2
SHI04506 Sapria himalayana HOM05D006249 ORTHO05D007643 2.0e-10 70.9 120 35.8
SHI16544 Sapria himalayana HOM05D006249 ORTHO05D007643 1.0e-09 68.6 116 36.2
SHI36883 Sapria himalayana HOM05D006249 ORTHO05D007643 2.9e-09 67.0 56 48.2
SHI36882 Sapria himalayana HOM05D006249 ORTHO05D007643 1.1e-08 65.1 116 35.3
SHI49503 Sapria himalayana HOM05D000624 ORTHO05D000495 1.1e-08 65.1 50 66.0
SHI54291 Sapria himalayana HOM05D006249 ORTHO05D007643 1.4e-08 64.7 159 35.2
SHI34501 Sapria himalayana HOM05D006249 ORTHO05D007643 2.5e-08 63.9 95 41.1
SHI31647 Sapria himalayana HOM05D006249 ORTHO05D007643 4.2e-08 63.2 61 50.8
SHI41947 Sapria himalayana HOM05D000624 ORTHO05D000495 2.7e-07 60.5 50 62.0
SHI43714 Sapria himalayana HOM05D000624 ORTHO05D007643 3.6e-07 60.1 49 59.2
SHI45616 Sapria himalayana HOM05D000624 ORTHO05D000495 3.6e-07 60.1 50 62.0
SHI27267 Sapria himalayana HOM05D000624 ORTHO05D000495 4.6e-07 59.7 56 53.6
SEGI_29111 Sequoiadendron giganteum HOM05D006249 ORTHO05D007643 7.9e-07 58.9 41 58.5
Migut.H00023 Erythranthe guttata HOM05D001287 ORTHO05D001226 1.0e-06 58.5 218 27.1
SHI49364 Sapria himalayana HOM05D000624 ORTHO05D000495 1.0e-06 58.5 50 60.0


User provided reference genes

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