Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g21710 Fragaria vesca HOM05D003973 ORTHO05D004679 0.0e+00 1690.2 887 100.0
FAN24G2194 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1661.4 911 96.5
FAN27G0583 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1657.9 888 97.0
FAN15G1892 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1642.5 912 95.5
FAN20G1573 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1640.2 888 97.4
RcHm_v2.0_Chr6g0288391 Rosa chinensis HOM05D003973 ORTHO05D004679 0.0e+00 1613.2 886 93.9
MD10G1185900 Malus domestica HOM05D003973 ORTHO05D004679 0.0e+00 1368.2 888 80.4
MD05G1199600 Malus domestica HOM05D003973 ORTHO05D004679 0.0e+00 1364.4 890 80.8
Prupe.8G225400 Prunus persica HOM05D003973 ORTHO05D004679 0.0e+00 1352.4 890 79.0
Thecc.01G260300 Theobroma cacao HOM05D003973 ORTHO05D004679 0.0e+00 1318.9 890 74.9
Manes.12G031400 Manihot esculenta HOM05D003973 ORTHO05D004679 0.0e+00 1287.7 890 74.3
Ciclev10018809m.g Citrus clementina HOM05D003973 ORTHO05D004679 0.0e+00 1284.2 898 72.3
COL.COLO4_05173 Corchorus olitorius HOM05D003973 ORTHO05D004679 0.0e+00 1278.1 886 73.7
Potri.002G039900 Populus trichocarpa HOM05D003973 ORTHO05D004679 0.0e+00 1275.0 891 75.0
TWI12G0927 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1270.4 892 72.4
Haze_24609 Corylus avellana HOM05D003973 ORTHO05D004679 0.0e+00 1267.7 933 69.9
CiPaw.03G262600 Carya illinoinensis HOM05D003973 ORTHO05D004679 0.0e+00 1265.4 796 78.1
Gohir.D11G135600 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1260.4 891 72.5
Gorai.007G145200 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1256.5 891 72.4
Atru.chr5.1648 Acer truncatum HOM05D003973 ORTHO05D004679 0.0e+00 1255.7 916 69.3
Gorai.004G072800 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1255.0 894 73.2
TWI18G0068 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1255.0 894 71.5
Gohir.A11G129900 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1254.2 891 71.9
Sabra02G0032000 Salix brachista HOM05D003973 ORTHO05D004679 0.0e+00 1253.4 891 72.8
TWI75G1776 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1245.7 794 77.5
Duzib138G0375 Durio zibethinus HOM05D003973 ORTHO05D004679 0.0e+00 1239.2 891 71.2
Cpa.g.sc50.33 Carica papaya HOM05D003973 ORTHO05D004679 0.0e+00 1237.6 888 72.1
Actinidia12891 Actinidia chinensis HOM05D003973 ORTHO05D004679 0.0e+00 1233.4 891 70.6
Sabra05G0171500 Salix brachista HOM05D003973 ORTHO05D004679 0.0e+00 1230.7 898 72.9
Potri.005G222800 Populus trichocarpa HOM05D003973 ORTHO05D004679 0.0e+00 1224.5 880 71.9
Gohir.D08G207800 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1224.2 891 69.7
QL09p038243 Quercus lobata HOM05D003973 ORTHO05D004679 0.0e+00 1218.8 891 69.7
Hma1.2p1_0621F.1_g190820 Hydrangea macrophylla HOM05D003973 ORTHO05D004679 0.0e+00 1217.2 893 70.4
Duzib133G1136 Durio zibethinus HOM05D003973 ORTHO05D004679 0.0e+00 1214.5 891 70.4
CANSAT01G0525 Cannabis sativa HOM05D003973 ORTHO05D004679 0.0e+00 1213.0 905 69.6
Ca_09689_v3 Cicer arietinum L. HOM05D003973 ORTHO05D004679 0.0e+00 1205.3 897 70.3
CSS0019197 Camellia sinensis var. sinensis HOM05D003973 ORTHO05D004679 0.0e+00 1202.2 894 69.6
Dinv34610 Davidia involucrata HOM05D003973 ORTHO05D004679 0.0e+00 1192.6 886 69.6
Lalb_Chr02g0152311 Lupinus albus HOM05D003973 ORTHO05D004679 0.0e+00 1191.8 891 68.6
Nn4g22928 Nelumbo nucifera HOM05D003973 ORTHO05D004679 0.0e+00 1191.0 896 68.0
Lj1g0003934 Lotus japonicus HOM05D003973 ORTHO05D004679 0.0e+00 1189.5 892 68.4
Lalb_Chr06g0170381 Lupinus albus HOM05D003973 ORTHO05D004679 0.0e+00 1189.1 884 68.8
Glyma.10G035800 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1187.6 890 68.1
Eucgr.B01536 Eucalyptus grandis HOM05D003973 ORTHO05D004679 0.0e+00 1186.0 893 67.9
Glyma.03G162100 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1183.3 903 68.3
TAR633G0700 Trochodendron aralioides HOM05D003973 ORTHO05D004679 0.0e+00 1182.5 891 68.4
Medtr1g070160 Medicago truncatula HOM05D003973 ORTHO05D004679 0.0e+00 1181.4 889 68.1
TAR362G0234 Trochodendron aralioides HOM05D003973 ORTHO05D004679 0.0e+00 1176.4 889 68.3
arahy.Tifrunner.gnm1.ann1.M1CRL2 Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1175.6 897 68.1
Glyma.19G163500 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1174.5 902 67.6
Glyma.13G122200 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1172.1 891 67.5
Lj5g0017930 Lotus japonicus HOM05D003973 ORTHO05D004679 0.0e+00 1171.0 884 67.4
VMungo1383G0117 Vigna mungo HOM05D003973 ORTHO05D004679 0.0e+00 1170.2 891 68.1
Phvul.001G159900 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 0.0e+00 1169.1 888 68.4
TPR.G16308 Trifolium pratense HOM05D003973 ORTHO05D004679 0.0e+00 1169.1 889 67.7
Solyc04g008630.3 Solanum lycopersicum HOM05D003973 ORTHO05D004679 0.0e+00 1164.8 897 70.0
Duzib211G0218 Durio zibethinus HOM05D003973 ORTHO05D004679 0.0e+00 1160.2 893 68.5
Medtr7g096680 Medicago truncatula HOM05D003973 ORTHO05D004679 0.0e+00 1160.2 917 66.1
Sopen04g003790 Solanum pennellii HOM05D003973 ORTHO05D004679 0.0e+00 1159.1 795 72.6
Cc11_g02590 Coffea canephora HOM05D003973 ORTHO05D004679 0.0e+00 1158.7 891 66.2
GSVIVG01028304001 Vitis vinifera HOM05D003973 ORTHO05D004679 0.0e+00 1158.3 884 67.4
arahy.Tifrunner.gnm1.ann1.0L9E2L Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1157.9 916 66.5
PGSC0003DMG400031378 Solanum tuberosum HOM05D003973 ORTHO05D004679 0.0e+00 1157.1 883 66.7
Psat3g058480 Pisum sativum HOM05D003973 ORTHO05D004679 0.0e+00 1153.7 931 69.3
PGR044G1639 Punica granatum HOM05D003973 ORTHO05D004679 0.0e+00 1152.5 899 66.7
CAN.G194.11 Capsicum annuum HOM05D003973 ORTHO05D004679 0.0e+00 1151.3 890 66.0
Gorai.004G220200 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1151.3 754 75.9
Peaxi162Scf00329g00811 Petunia axillaris HOM05D003973 ORTHO05D004679 0.0e+00 1149.8 793 72.3
Nitab4.5_0001419g0010 Nicotiana tabacum HOM05D003973 ORTHO05D004679 0.0e+00 1149.4 889 66.1
TPR.G3551 Trifolium pratense HOM05D003973 ORTHO05D004679 0.0e+00 1146.3 891 67.9
Nitab4.5_0000129g0340 Nicotiana tabacum HOM05D003973 ORTHO05D004679 0.0e+00 1146.0 889 65.6
Sed0015853 Sechium edule HOM05D003973 ORTHO05D004679 0.0e+00 1139.8 900 65.7
Dinv22416 Davidia involucrata HOM05D003973 ORTHO05D004679 0.0e+00 1139.4 889 67.4
ClCG07G000970 Citrullus lanatus HOM05D003973 ORTHO05D004679 0.0e+00 1139.0 904 65.6
MBI17_g07970_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 0.0e+00 1139.0 888 65.9
Sed0025131 Sechium edule HOM05D003973 ORTHO05D004679 0.0e+00 1134.8 899 65.2
MSTRG.18316 Avicennia marina HOM05D003973 ORTHO05D004679 0.0e+00 1134.0 887 65.6
ECA247G3763 Erigeron canadensis HOM05D003973 ORTHO05D004679 0.0e+00 1134.0 891 66.1
MELO3C012904.2 Cucumis melo HOM05D003973 ORTHO05D004679 0.0e+00 1130.5 900 65.1
Lsat_1_v5_gn_9_8721 Lactuca sativa HOM05D003973 ORTHO05D004679 0.0e+00 1129.8 897 65.7
Gohir.A08G060000 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1128.2 890 68.4
Oeu026512.1 Olea europaea HOM05D003973 ORTHO05D004679 0.0e+00 1122.8 880 65.5
Rhsim13G0034000 Rhododendron simsii HOM05D003973 ORTHO05D004679 0.0e+00 1122.5 902 66.5
Gohir.D08G069200 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1121.3 894 66.9
SalBow4G2825 Salvia bowleyana HOM05D003973 ORTHO05D004679 0.0e+00 1120.9 920 63.9
CsaV3_3G022520 Cucumis sativus L. HOM05D003973 ORTHO05D004679 0.0e+00 1119.4 910 64.4
THA.LOC104826212 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 0.0e+00 1113.2 900 66.0
Aqoxy1G00848 Aquilegia oxysepala HOM05D003973 ORTHO05D004679 0.0e+00 1112.1 883 64.6
HanXRQChr10g0281061 Helianthus annuus HOM05D003973 ORTHO05D004679 0.0e+00 1106.7 890 64.3
THA.LOC104800875 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 0.0e+00 1106.3 898 65.8
DCAR_000939 Daucus carota HOM05D003973 ORTHO05D004679 0.0e+00 1099.0 779 71.1
DCAR_005697 Daucus carota HOM05D003973 ORTHO05D004679 0.0e+00 1096.3 893 64.4
Gohir.A08G189300 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1094.0 891 64.2
Thhalv10016226m.g Eutrema salsugineum HOM05D003973 ORTHO05D004679 0.0e+00 1090.9 905 65.3
BolC4t27568H Brassica oleracea HOM05D003973 ORTHO05D004679 0.0e+00 1090.1 905 64.2
Sp4g13740 Schrenkiella parvula HOM05D003973 ORTHO05D004679 0.0e+00 1088.2 904 63.9
BcaB06g28520 Brassica carinata HOM05D003973 ORTHO05D004679 0.0e+00 1087.0 905 64.1
arahy.Tifrunner.gnm1.ann1.B4WKJK Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1086.6 880 65.2
AL4G26480 Arabidopsis lyrata HOM05D003973 ORTHO05D004679 0.0e+00 1086.2 901 64.8
HanXRQChr15g0467921 Helianthus annuus HOM05D003973 ORTHO05D004679 0.0e+00 1085.9 894 63.5
AT2G31260 Arabidopsis thaliana HOM05D003973 ORTHO05D004679 0.0e+00 1083.6 900 65.4
arahy.Tifrunner.gnm1.ann1.61T5XF Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1083.6 878 64.9
A04p24090 Brassica napus HOM05D003973 ORTHO05D004679 0.0e+00 1081.2 906 64.8
Carub.0004s1253 Capsella rubella HOM05D003973 ORTHO05D004679 0.0e+00 1079.3 900 64.3
C04p60770 Brassica napus HOM05D003973 ORTHO05D004679 0.0e+00 1078.2 907 64.1
CARHR124850 Cardamine hirsuta HOM05D003973 ORTHO05D004679 0.0e+00 1075.8 899 63.8
Migut.D00414 Erythranthe guttata HOM05D003973 ORTHO05D004679 6.1e-312 1074.7 893 63.7
Ah.11g049650 Amaranthus hybridus HOM05D003973 ORTHO05D004679 6.1e-312 1073.9 888 63.1
BcaB02g10369 Brassica carinata HOM05D003973 ORTHO05D004679 1.2e-311 1072.8 905 63.3
BraA04t17928Z Brassica rapa HOM05D003973 ORTHO05D004679 1.8e-311 1072.4 814 68.7
BcaB06g28436 Brassica carinata HOM05D003973 ORTHO05D004679 7.3e-308 1060.4 807 67.8
Lj2A1153G48 Lonicera japonica HOM05D003973 ORTHO05D004679 1.4e-306 1056.2 891 63.4
Aa31LG5G5690 Aethionema arabicum HOM05D003973 ORTHO05D004679 2.4e-306 1055.4 774 69.5
Oeu039681.1 Olea europaea HOM05D003973 ORTHO05D004679 2.4e-303 1045.4 879 62.3
PSO063G1318 Papaver somniferum HOM05D003973 ORTHO05D004679 2.1e-302 1042.3 801 65.9
PSO782G1372 Papaver somniferum HOM05D003973 ORTHO05D004679 5.1e-301 1037.7 800 65.5
EL10Ac5g10415 Beta vulgaris HOM05D003973 ORTHO05D004679 7.3e-300 1033.9 948 60.5
Lj1A65T50 Lonicera japonica HOM05D003973 ORTHO05D004679 7.3e-300 1033.9 815 66.9
Phvul.007G194300 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 5.6e-292 1007.7 888 61.9
Psat6g055320 Pisum sativum HOM05D003973 ORTHO05D004679 1.8e-290 1002.7 830 63.9
HanXRQChr08g0217761 Helianthus annuus HOM05D003973 ORTHO05D004679 5.1e-285 984.6 796 63.7
Hund09596 Selenicereus undatus HOM05D003973 ORTHO05D004679 1.4e-282 976.5 894 61.0
SGA_v2.0_scaffold138G35249 Striga asiatica HOM05D003973 ORTHO05D004679 1.4e-282 976.5 887 58.6
Nn3g17035 Nelumbo nucifera HOM05D003973 ORTHO05D004679 8.4e-280 967.2 613 77.3
vmacro02653 Vaccinium macrocarpon HOM05D003973 ORTHO05D004679 5.5e-279 964.5 872 60.8
Oeu058816.4 Olea europaea HOM05D003973 ORTHO05D004679 1.4e-274 949.9 977 54.5
AUR62024730 Chenopodium quinoa HOM05D003973 ORTHO05D004679 3.1e-274 948.7 899 59.1
AUR62011889 Chenopodium quinoa HOM05D003973 ORTHO05D004679 1.2e-273 946.8 895 59.4
Sc17g0000740 Simmondsia chinensis HOM05D003973 ORTHO05D004679 1.0e-272 943.7 590 77.6
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 4.5e-265 918.3 887 56.8
ATR0680G230 Amborella trichopoda HOM05D003973 ORTHO05D004679 3.8e-264 915.2 806 58.7
ATR0559G363 Amborella trichopoda HOM05D003973 ORTHO05D004679 3.1e-258 895.6 799 57.8
SHI09836 Sapria himalayana HOM05D003973 ORTHO05D004679 9.4e-255 884.0 931 54.5
Os03g0248000 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 5.3e-250 868.2 803 56.5
HPP92_008425 Vanilla planifolia HOM05D003973 ORTHO05D004679 7.2e-247 857.8 788 57.0
Os10g0163100 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 2.2e-243 846.3 791 55.1
Zm00001eb010620 Zea mays HOM05D003973 ORTHO05D004679 2.2e-243 846.3 874 51.8
ECA236G2624 Erigeron canadensis HOM05D003973 ORTHO05D004679 1.0e-240 837.4 801 56.8
SEGI_30090 Sequoiadendron giganteum HOM05D003973 ORTHO05D004679 9.1e-234 814.3 792 53.8
HPP92_008421 Vanilla planifolia HOM05D003973 ORTHO05D004679 6.1e-230 801.6 616 64.4
Ah.02g111890 Amaranthus hybridus HOM05D003973 ORTHO05D004679 4.0e-229 798.9 792 53.4
CiPaw.04G185700 Carya illinoinensis HOM05D003973 ORTHO05D004679 1.5e-220 770.4 596 68.1
Mapoly0002s0148 Marchantia polymorpha HOM05D003973 ORTHO05D004679 1.9e-210 736.9 779 49.6
SMO239G0162 Selaginella moellendorffii HOM05D003973 ORTHO05D004679 2.1e-209 733.4 572 61.4
Pp3c10_9800 Physcomitrium patens HOM05D003973 ORTHO05D004679 8.9e-205 718.0 780 48.7
Pp3c2_1820 Physcomitrium patens HOM05D003973 ORTHO05D004679 2.3e-200 703.4 589 56.7
BraA05t20372Z Brassica rapa HOM05D003973 ORTHO05D004679 1.5e-196 690.6 636 59.0
A05p14440 Brassica napus HOM05D003973 ORTHO05D004679 7.8e-193 678.3 636 57.9
CBR_g24398 Chara braunii HOM05D003973 ORTHO05D004679 1.3e-187 661.0 613 52.5
VMungo0720G0690 Vigna mungo HOM05D003973 ORTHO05D004679 9.3e-170 601.7 589 54.8
unitig_60.g25752 Utricularia gibba HOM05D003973 ORTHO05D004679 8.2e-166 588.6 802 42.5
AagrBONN_evm.TU.Sc2ySwM_117.1675 Anthoceros agrestis HOM05D003973 ORTHO05D004679 9.4e-146 521.9 571 47.6
MBI18_g15332_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 2.1e-137 494.2 419 58.7
AUR62024729 Chenopodium quinoa HOM05D003973 ORTHO05D004679 2.0e-135 487.6 421 60.6
MCO05G121 Micromonas commoda HOM05D003973 ORTHO05D004679 2.4e-117 427.6 600 37.7
CDE02G3928 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 5.2e-112 409.8 513 46.0
BcaB06g28438 Brassica carinata HOM05D003973 ORTHO05D004679 5.7e-111 406.4 401 58.6
CDE06G1379 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 1.5e-103 381.7 407 50.6
BolC4t23456H Brassica oleracea HOM05D003973 ORTHO05D004679 1.4e-96 358.6 266 65.8
Cre09.g391500 Chlamydomonas reinhardtii HOM05D003973 ORTHO05D004679 1.4e-93 348.6 698 31.5
CDE06G1301 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 1.0e-83 315.8 225 67.1
C04p19230 Brassica napus HOM05D003973 ORTHO05D004679 8.9e-80 302.8 266 58.3
BcaC02g11207 Brassica carinata HOM05D003973 ORTHO05D004679 3.4e-71 274.2 175 73.7
Cfa025050 Carpinus fangiana HOM05D003973 ORTHO05D004679 2.3e-67 261.5 520 30.2
Hund02908 Selenicereus undatus HOM05D003973 ORTHO05D004679 3.9e-59 234.2 156 74.4
PRCOL_00006952 Prasinoderma coloniale HOM05D003973 ORTHO05D004679 9.6e-58 229.6 504 28.8
Psat2g015440 Pisum sativum HOM05D003973 ORTHO05D004679 2.7e-36 158.3 189 50.8
Sc17g0000730 Simmondsia chinensis HOM05D003973 ORTHO05D004679 9.4e-29 133.3 202 38.1
CSS0024912 Camellia sinensis var. sinensis HOM05D003973 ORTHO05D004679 4.2e-21 107.8 74 74.3
BcaB06g28437 Brassica carinata HOM05D003973 ORTHO05D004679 1.6e-20 105.9 65 75.4
Hund02909 Selenicereus undatus HOM05D003973 ORTHO05D004679 2.3e-19 102.1 125 49.6
AagrBONN_evm.TU.Sc2ySwM_344.134 Anthoceros agrestis HOM05D003973 ORTHO05D004679 2.6e-18 98.6 71 60.6
VMungo0251G0786 Vigna mungo HOM05D003973 ORTHO05D432747 3.6e-12 78.2 74 58.1
VMungo0720G0978 Vigna mungo HOM05D003973 ORTHO05D435101 2.3e-11 75.5 144 32.6


User provided reference genes

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