Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g21470 Fragaria vesca HOM05D004208 ORTHO05D005156 3.9e-263 911.0 483 100.0
FAN20G2986 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.0e-255 886.3 479 95.6
FAN15G2877 Fragaria x ananassa HOM05D004208 ORTHO05D005156 3.3e-254 881.3 506 91.7
FAN27G3501 Fragaria x ananassa HOM05D004208 ORTHO05D005156 5.9e-251 870.5 469 95.7
FAN24G2300 Fragaria x ananassa HOM05D004208 ORTHO05D005156 4.2e-249 864.4 461 97.2
RcHm_v2.0_Chr6g0288111 Rosa chinensis HOM05D004208 ORTHO05D005156 1.1e-228 796.6 484 87.6
FAN17G2653 Fragaria x ananassa HOM05D004208 ORTHO05D005156 7.7e-219 763.8 483 82.6
FvH4_4g12040 Fragaria vesca HOM05D004208 ORTHO05D005156 1.5e-217 759.6 483 82.6
FAN07G0785 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.7e-213 746.1 514 76.7
FAN12G3775 Fragaria x ananassa HOM05D004208 ORTHO05D005156 2.9e-189 665.6 531 68.7
FAN12G0345 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.2e-187 660.2 531 68.4
RcHm_v2.0_Chr4g0409381 Rosa chinensis HOM05D004208 ORTHO05D005156 1.7e-186 656.4 433 78.5
Prupe.8G223600 Prunus persica HOM05D004208 ORTHO05D005156 7.3e-185 651.0 485 69.3
Thecc.01G258100 Theobroma cacao HOM05D004208 ORTHO05D005156 1.2e-174 617.1 484 65.9
COL.COLO4_05893 Corchorus olitorius HOM05D004208 ORTHO05D005156 2.2e-173 612.8 493 66.3
Duzib133G1203 Durio zibethinus HOM05D004208 ORTHO05D005156 7.8e-171 604.4 483 64.2
Gohir.D08G208600 Gossypium hirsutum HOM05D004208 ORTHO05D005156 1.9e-169 599.7 484 65.3
Gorai.004G221000 Gossypium raimondii HOM05D004208 ORTHO05D005156 1.9e-169 599.7 484 65.3
CANSAT01G2107 Cannabis sativa HOM05D004208 ORTHO05D005156 9.6e-169 597.4 489 64.0
Gohir.A08G190100 Gossypium hirsutum HOM05D004208 ORTHO05D005156 1.6e-168 596.7 484 65.3
Duzib138G0474 Durio zibethinus HOM05D004208 ORTHO05D005156 1.5e-166 590.1 484 63.2
Cfa012194 Carpinus fangiana HOM05D004208 ORTHO05D005156 1.3e-165 587.0 466 65.0
MD05G1197100 Malus domestica HOM05D004208 ORTHO05D005156 6.4e-165 584.7 493 63.1
PGR031G1029 Punica granatum HOM05D004208 ORTHO05D005156 5.4e-164 581.6 490 62.9
Dinv22405 Davidia involucrata HOM05D004208 ORTHO05D005156 2.3e-162 576.2 492 62.8
Manes.12G032400 Manihot esculenta HOM05D004208 ORTHO05D005156 6.6e-162 574.7 484 61.6
TAR636G1466 Trochodendron aralioides HOM05D004208 ORTHO05D005156 8.7e-162 574.3 486 61.1
CsaV3_5G028820 Cucumis sativus L. HOM05D004208 ORTHO05D005156 1.9e-161 573.2 485 61.0
CiPaw.11G131900 Carya illinoinensis HOM05D004208 ORTHO05D005156 7.3e-161 571.2 460 63.5
Sed0002598 Sechium edule HOM05D004208 ORTHO05D005156 1.6e-160 570.1 485 61.9
Haze_08822 Corylus avellana HOM05D004208 ORTHO05D005156 1.1e-159 567.4 495 60.6
QL12p032241 Quercus lobata HOM05D004208 ORTHO05D005156 9.0e-159 564.3 459 66.7
CSS0041954 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 1.2e-158 563.9 490 62.2
Atru.chr5.1689 Acer truncatum HOM05D004208 ORTHO05D005156 3.4e-158 562.4 485 63.9
Sed0003224 Sechium edule HOM05D004208 ORTHO05D005156 5.8e-158 561.6 485 60.2
CSS0038412 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 2.2e-157 559.7 490 62.4
GSVIVG01028335001 Vitis vinifera HOM05D004208 ORTHO05D005156 1.4e-156 557.0 487 63.9
Actinidia07297 Actinidia chinensis HOM05D004208 ORTHO05D005156 2.7e-155 552.7 492 60.8
Hma1.2p1_0273F.1_g109690 Hydrangea macrophylla HOM05D004208 ORTHO05D005156 1.3e-154 550.4 489 61.3
Lj2A1151T32 Lonicera japonica HOM05D004208 ORTHO05D005156 2.5e-153 546.2 494 59.7
Actinidia25791 Actinidia chinensis HOM05D004208 ORTHO05D005156 4.3e-153 545.4 505 58.6
PSO339G3828 Papaver somniferum HOM05D004208 ORTHO05D005156 7.4e-153 544.7 490 59.4
Potri.005G224500 Populus trichocarpa HOM05D004208 ORTHO05D005156 9.6e-153 544.3 486 62.6
Manes.13G034400 Manihot esculenta HOM05D004208 ORTHO05D005156 6.2e-152 541.6 484 58.3
Potri.002G038300 Populus trichocarpa HOM05D004208 ORTHO05D005156 8.1e-152 541.2 486 61.9
Ciclev10019992m.g Citrus clementina HOM05D004208 ORTHO05D005156 1.1e-151 540.8 485 61.9
Sabra05G0173200 Salix brachista HOM05D004208 ORTHO05D005156 3.8e-149 532.3 500 60.4
Aa31LG8G17460 Aethionema arabicum HOM05D004208 ORTHO05D005156 6.4e-149 531.6 484 55.8
TWI32G0756 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 6.4e-149 531.6 484 58.5
Eucgr.G01944 Eucalyptus grandis HOM05D004208 ORTHO05D005156 1.1e-148 530.8 418 64.4
Thhalv10001977m.g Eutrema salsugineum HOM05D004208 ORTHO05D005156 4.0e-143 512.3 484 56.2
ATR0736G190 Amborella trichopoda HOM05D004208 ORTHO05D005156 6.9e-143 511.5 490 55.9
CDE03G0182 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 4.5e-142 508.8 486 54.9
Sabra02G0030700 Salix brachista HOM05D004208 ORTHO05D005156 5.8e-142 508.4 456 62.1
Peaxi162Scf00225g00519 Petunia axillaris HOM05D004208 ORTHO05D005156 7.6e-142 508.1 511 54.2
Glyma.04G107400 Glycine max HOM05D004208 ORTHO05D005156 2.2e-141 506.5 483 56.3
AUR62030125 Chenopodium quinoa HOM05D004208 ORTHO05D005156 2.9e-141 506.1 489 53.8
Migut.O00608 Erythranthe guttata HOM05D004208 ORTHO05D005156 4.9e-141 505.4 498 56.0
AUR62038602 Chenopodium quinoa HOM05D004208 ORTHO05D005156 1.1e-140 504.2 489 53.8
AL4G32160 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 1.9e-140 503.4 484 54.3
Migut.N01348 Erythranthe guttata HOM05D004208 ORTHO05D005156 2.5e-140 503.1 498 56.2
Cpa.g.sc81.94 Carica papaya HOM05D004208 ORTHO05D005156 5.5e-140 501.9 462 58.0
AT2G36070 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 7.9e-139 498.0 484 53.5
SalBow1G3185 Salvia bowleyana HOM05D004208 ORTHO05D005156 7.9e-139 498.0 492 54.7
HanXRQChr16g0512021 Helianthus annuus HOM05D004208 ORTHO05D005156 1.0e-138 497.7 493 58.4
Actinidia09547 Actinidia chinensis HOM05D004208 ORTHO05D005156 3.0e-138 496.1 492 54.3
AL3G53520 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 6.7e-138 495.0 486 53.3
Phvul.005G002100 Phaseolus vulgaris HOM05D004208 ORTHO05D005156 1.5e-137 493.8 484 55.8
Ah.03g147410 Amaranthus hybridus HOM05D004208 ORTHO05D005156 3.3e-137 492.7 491 52.7
Carub.0004s1781 Capsella rubella HOM05D004208 ORTHO05D005156 1.6e-136 490.3 485 53.4
Lsat_1_v5_gn_7_79121 Lactuca sativa HOM05D004208 ORTHO05D005156 2.8e-136 489.6 492 56.9
Solyc01g098230.3 Solanum lycopersicum HOM05D004208 ORTHO05D005156 4.8e-136 488.8 499 53.9
Sopen01g041810 Solanum pennellii HOM05D004208 ORTHO05D005156 4.8e-136 488.8 504 53.8
Dinv34629 Davidia involucrata HOM05D004208 ORTHO05D005156 1.8e-135 486.9 426 62.0
Eucgr.B01552 Eucalyptus grandis HOM05D004208 ORTHO05D005156 2.0e-134 483.4 507 54.4
Rhsim01G0263600 Rhododendron simsii HOM05D004208 ORTHO05D005156 2.6e-134 483.0 494 55.3
CAN.G134.214 Capsicum annuum HOM05D004208 ORTHO05D005156 1.3e-133 480.7 494 52.2
TAR362G0204 Trochodendron aralioides HOM05D004208 ORTHO05D005156 1.3e-133 480.7 450 57.1
Sp3g33730 Schrenkiella parvula HOM05D004208 ORTHO05D005156 2.9e-133 479.6 474 54.6
MELO3C033986.2 Cucumis melo HOM05D004208 ORTHO05D005156 6.5e-133 478.4 588 46.9
Psat7g228960 Pisum sativum HOM05D004208 ORTHO05D005156 6.5e-133 478.4 483 53.2
Cc01_g18340 Coffea canephora HOM05D004208 ORTHO05D005156 8.5e-133 478.0 497 52.7
SGA_v2.0_scaffold32G13335 Striga asiatica HOM05D004208 ORTHO05D005156 5.5e-132 475.3 493 54.6
Nitab4.5_0000245g0150 Nicotiana tabacum HOM05D004208 ORTHO05D005156 1.2e-131 474.2 492 53.3
Ah.02g120380 Amaranthus hybridus HOM05D004208 ORTHO05D005156 2.7e-131 473.0 490 51.4
BcaB07g31584 Brassica carinata HOM05D004208 ORTHO05D005156 7.9e-131 471.5 477 52.8
AT2G20510 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 3.9e-130 469.2 486 53.7
Ca_26001_v3 Cicer arietinum L. HOM05D004208 ORTHO05D005156 8.8e-130 468.0 490 52.4
Peaxi162Scf00225g00527 Petunia axillaris HOM05D004208 ORTHO05D005156 8.8e-130 468.0 498 52.8
DCAR_005689 Daucus carota HOM05D004208 ORTHO05D005156 7.4e-129 464.9 509 50.9
BraA09t36939Z Brassica rapa HOM05D004208 ORTHO05D005156 1.7e-128 463.8 480 51.9
Nn3g19657 Nelumbo nucifera HOM05D004208 ORTHO05D005156 1.7e-128 463.8 487 54.4
VMungo1080G0701 Vigna mungo HOM05D004208 ORTHO05D005156 4.8e-128 462.2 486 52.9
THA.LOC104805532 Tarenaya hassleriana HOM05D004208 ORTHO05D005156 2.4e-127 459.9 485 53.2
TWI34G1830 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 4.1e-127 459.1 484 51.4
MSTRG.16949 Avicennia marina HOM05D004208 ORTHO05D005156 5.3e-127 458.8 492 51.2
EL10Ac7g17258 Beta vulgaris HOM05D004208 ORTHO05D005156 6.9e-127 458.4 441 53.5
Lalb_Chr15g0090311 Lupinus albus HOM05D004208 ORTHO05D005156 9.1e-127 458.0 492 54.1
Medtr2g083690 Medicago truncatula HOM05D004208 ORTHO05D005156 9.1e-127 458.0 483 51.6
BcaB08g34912 Brassica carinata HOM05D004208 ORTHO05D005156 1.2e-126 457.6 471 52.7
arahy.Tifrunner.gnm1.ann1.W57KUE Arachis hypogaea HOM05D004208 ORTHO05D005156 2.0e-126 456.8 517 49.9
SGA_v2.0_scaffold58G20323 Striga asiatica HOM05D004208 ORTHO05D005156 2.6e-126 456.4 408 59.8
C09p15320 Brassica napus HOM05D004208 ORTHO05D005156 7.7e-126 454.9 476 51.1
A09p12940 Brassica napus HOM05D004208 ORTHO05D005156 1.7e-125 453.8 476 51.3
BcaB03g16846 Brassica carinata HOM05D004208 ORTHO05D005156 2.2e-125 453.4 475 51.8
MBI10_g22594_MAGBIO Magnolia biondii HOM05D004208 ORTHO05D005156 5.0e-125 452.2 466 54.3
Oeu062471.2 Olea europaea HOM05D004208 ORTHO05D005156 1.4e-124 450.7 544 49.4
BraA07t27815Z Brassica rapa HOM05D004208 ORTHO05D005156 2.5e-124 449.9 477 52.4
BcaC04g22784 Brassica carinata HOM05D004208 ORTHO05D005156 3.2e-124 449.5 475 50.7
BcaC06g36740 Brassica carinata HOM05D004208 ORTHO05D005156 5.5e-124 448.7 475 53.7
A07p00220 Brassica napus HOM05D004208 ORTHO05D005156 5.5e-124 448.7 476 52.3
BolC7t40497H Brassica oleracea HOM05D004208 ORTHO05D005156 9.4e-124 448.0 477 53.7
Aqoxy2G03649 Aquilegia oxysepala HOM05D004208 ORTHO05D005156 3.6e-123 446.0 492 50.0
BolC9t54440H Brassica oleracea HOM05D004208 ORTHO05D005156 7.9e-123 444.9 480 50.0
CARHR130310 Cardamine hirsuta HOM05D004208 ORTHO05D005156 1.5e-121 440.7 484 51.2
Carub.0003s3496 Capsella rubella HOM05D004208 ORTHO05D005156 3.3e-121 439.5 486 52.3
Zm00001eb111900 Zea mays HOM05D004208 ORTHO05D005156 2.0e-118 430.3 487 48.9
Nitab4.5_0001165g0160 Nicotiana tabacum HOM05D004208 ORTHO05D005156 7.7e-118 428.3 453 52.5
arahy.Tifrunner.gnm1.ann1.M6MGA2 Arachis hypogaea HOM05D004208 ORTHO05D005156 1.7e-117 427.2 484 50.4
CSS0015888 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 5.0e-117 425.6 460 53.0
C07p00510 Brassica napus HOM05D004208 ORTHO05D005156 3.6e-115 419.5 474 51.3
TPR.G5025 Trifolium pratense HOM05D004208 ORTHO05D005156 1.1e-113 414.5 401 53.1
ECA236G3853 Erigeron canadensis HOM05D004208 ORTHO05D000364 7.4e-113 411.8 467 52.7
HPP92_012187 Vanilla planifolia HOM05D004208 ORTHO05D005156 1.3e-112 411.0 474 47.3
Medtr4g075680 Medicago truncatula HOM05D004208 ORTHO05D005156 4.8e-112 409.1 483 47.4
CDE04G1955 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 3.1e-111 406.4 390 54.4
Os07g0409700 Oryza sativa ssp. japonica HOM05D004208 ORTHO05D005156 3.5e-102 376.3 460 47.0
Oeu042777.2 Olea europaea HOM05D004208 ORTHO05D005156 2.5e-100 370.2 498 45.6
Medtr4g029490 Medicago truncatula HOM05D004208 ORTHO05D005156 6.1e-99 365.5 484 45.7
Peaxi162Scf00118g00111 Petunia axillaris HOM05D004208 ORTHO05D005156 1.2e-97 361.3 391 52.2
Nitab4.5_0001526g0060 Nicotiana tabacum HOM05D004208 ORTHO05D005156 1.2e-91 341.3 450 44.7
Lj6g0013651 Lotus japonicus HOM05D004208 ORTHO05D005156 2.0e-89 334.0 486 42.2
Nitab4.5_0007798g0030 Nicotiana tabacum HOM05D004208 ORTHO05D005156 5.7e-89 332.4 491 43.0
BcaC07g41210 Brassica carinata HOM05D004208 ORTHO05D005156 1.4e-87 327.8 412 46.8
Oeu021968.1 Olea europaea HOM05D004208 ORTHO05D005156 1.9e-84 317.4 482 42.5
CBR_g30902 Chara braunii HOM05D004208 ORTHO05D005156 7.3e-84 315.5 450 40.0
SEGI_36648 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 2.1e-83 313.9 407 45.9
Sc05g0000700 Simmondsia chinensis HOM05D004208 ORTHO05D005156 3.1e-82 310.1 345 51.9
SMO353G0191 Selaginella moellendorffii HOM05D004208 ORTHO05D005156 4.0e-82 309.7 446 42.4
ClCG01G005870 Citrullus lanatus HOM05D004208 ORTHO05D005156 6.8e-82 308.9 216 68.1
Mapoly0070s0010 Marchantia polymorpha HOM05D004208 ORTHO05D005156 1.3e-80 304.7 372 44.9
PGSC0003DMG400022489 Solanum tuberosum HOM05D004208 ORTHO05D005156 6.0e-78 295.8 216 63.9
Pp3c4_19960 Physcomitrium patens HOM05D004208 ORTHO05D005156 3.3e-76 290.0 330 45.2
unitig_746.g26574 Utricularia gibba HOM05D004208 ORTHO05D005156 1.2e-73 281.6 222 60.8
Pp3c12_7570 Physcomitrium patens HOM05D004208 ORTHO05D005156 1.3e-72 278.1 381 40.9
AagrBONN_evm.TU.Sc2ySwM_344.3623 Anthoceros agrestis HOM05D004208 ORTHO05D005156 4.9e-72 276.2 298 49.0
Lalb_Chr06g0171061 Lupinus albus HOM05D004208 ORTHO05D005156 7.8e-62 242.3 180 65.6
HanXRQChr10g0294161 Helianthus annuus HOM05D004208 ORTHO05D005156 1.1e-52 211.8 216 56.5
Lalb_Chr06g0171071 Lupinus albus HOM05D004208 ORTHO05D005156 5.3e-50 203.0 316 45.3
SEGI_05587 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 5.6e-44 183.0 134 62.7
Actinidia37513 Actinidia chinensis HOM05D004208 ORTHO05D005156 1.4e-42 178.3 227 44.9
MCO02G332 Micromonas commoda HOM05D004208 ORTHO05D005156 8.4e-40 169.1 365 32.3
SHI09778 Sapria himalayana HOM05D004208 ORTHO05D005156 1.4e-39 168.3 269 40.5
RcHm_v2.0_Chr5g0013581 Rosa chinensis HOM05D004208 ORTHO05D005156 3.3e-36 157.1 96 77.1
Cre16.g660800 Chlamydomonas reinhardtii HOM05D004208 ORTHO05D005156 6.2e-35 152.9 243 33.7
PRCOL_00004598 Prasinoderma coloniale HOM05D004208 ORTHO05D005156 6.0e-30 136.3 178 35.4
CAN.G279.25 Capsicum annuum HOM05D004208 ORTHO05D005156 3.2e-23 114.0 228 36.0
Rhsim01G0263500 Rhododendron simsii HOM05D004208 ORTHO05D005156 1.5e-20 105.1 123 52.8
Glyma.09G002800 Glycine max HOM05D004208 ORTHO05D005156 3.1e-18 97.4 76 59.2
SEGI_40921 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 9.0e-18 95.9 72 59.7
Aqoxy5G04369 Aquilegia oxysepala HOM05D004870 ORTHO05D006061 1.0e-16 92.4 114 49.1
Cfa026408 Carpinus fangiana HOM05D004208 ORTHO05D121639 5.0e-16 90.1 312 23.4
FvH4_3g18772 Fragaria vesca HOM05D004208 ORTHO05D198159 5.1e-13 80.1 63 71.4
FvH4_4g16331 Fragaria vesca HOM05D004208 ORTHO05D197324 6.3e-11 73.2 85 57.6
Atru.chr3.4028 Acer truncatum HOM05D004208 ORTHO05D005156 4.5e-09 67.0 52 57.7
CDE04G1040 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 5.0e-08 63.5 93 38.7
MD09G1008600 Malus domestica HOM05D004208 ORTHO05D005156 2.7e-06 57.8 66 42.4


User provided reference genes

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