Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g21082 Fragaria vesca HOM05D000797 ORTHO05D007726 8.8e-60 233.4 117 100.0
FvH4_4g29931 Fragaria vesca HOM05D000797 ORTHO05D007726 2.6e-43 178.7 94 95.7
FAN02G2487 Fragaria x ananassa HOM05D000067 ORTHO05D000280 1.8e-20 102.8 57 94.7
RcHm_v2.0_Chr4g0423151 Rosa chinensis HOM05D000797 ORTHO05D007726 2.2e-18 95.9 56 85.7
FvH4_4g18561 Fragaria vesca HOM05D000797 ORTHO05D007726 3.7e-18 95.1 65 73.8
FAN18G0498 Fragaria x ananassa HOM05D002894 ORTHO05D002579 4.9e-18 94.7 92 62.0
FAN07G0695 Fragaria x ananassa HOM05D005069 ORTHO05D006024 2.4e-17 92.4 56 83.9
Prupe.1G132500 Prunus persica HOM05D000797 ORTHO05D007726 4.7e-13 78.2 64 64.1
Nn3g21531 Nelumbo nucifera HOM05D000797 ORTHO05D007726 1.5e-11 73.2 68 51.5
Haze_13326 Corylus avellana HOM05D000797 ORTHO05D007726 2.0e-11 72.8 55 67.3
vmacro08180 Vaccinium macrocarpon HOM05D000797 ORTHO05D007726 2.6e-11 72.4 64 57.8
Cfa014702 Carpinus fangiana HOM05D000797 ORTHO05D007726 4.4e-11 71.6 55 65.5
CiPaw.01G145900 Carya illinoinensis HOM05D000797 ORTHO05D007726 5.8e-11 71.2 55 63.6
Hma1.2p1_0804F.1_g221000 Hydrangea macrophylla HOM05D000797 ORTHO05D007726 5.8e-11 71.2 51 66.7
Hma1.2p1_0804F.1_g221010 Hydrangea macrophylla HOM05D000797 ORTHO05D007726 5.8e-11 71.2 51 66.7
TWI73G1204 Tripterygium wilfordii HOM05D000797 ORTHO05D007726 7.5e-11 70.9 61 57.4
MELO3C006679.2 Cucumis melo HOM05D000797 ORTHO05D007726 9.9e-11 70.5 52 67.3
Rhsim04G0224800 Rhododendron simsii HOM05D000797 ORTHO05D007726 9.9e-11 70.5 63 57.1
MD13G1165700 Malus domestica HOM05D000797 ORTHO05D007726 1.3e-10 70.1 62 62.9
CsaV3_3G014830 Cucumis sativus L. HOM05D000797 ORTHO05D007726 1.7e-10 69.7 52 67.3
TWI09G1463 Tripterygium wilfordii HOM05D000797 ORTHO05D007726 1.7e-10 69.7 82 47.6
Manes.03G198100 Manihot esculenta HOM05D000797 ORTHO05D007726 2.9e-10 68.9 52 59.6
Sabra10G0007300 Salix brachista HOM05D000797 ORTHO05D007726 2.9e-10 68.9 55 60.0
PGSC0003DMG400011330 Solanum tuberosum HOM05D000797 ORTHO05D007726 2.9e-10 68.9 106 39.6
Actinidia40296 Actinidia chinensis HOM05D000797 ORTHO05D007726 3.7e-10 68.6 66 54.5
Eucgr.H03953 Eucalyptus grandis HOM05D000797 ORTHO05D007726 4.9e-10 68.2 51 68.6
Potri.010G011300 Populus trichocarpa HOM05D000797 ORTHO05D007726 4.9e-10 68.2 54 61.1
GSVIVG01035121001 Vitis vinifera HOM05D000797 ORTHO05D007726 4.9e-10 68.2 60 60.0
Lj6A680T85 Lonicera japonica HOM05D000797 ORTHO05D007726 6.4e-10 67.8 55 63.6
Dinv44356 Davidia involucrata HOM05D000797 ORTHO05D007726 8.3e-10 67.4 55 60.0
AL3G17970 Arabidopsis lyrata HOM05D000797 ORTHO05D007726 1.4e-09 66.6 103 39.8
Peaxi162Scf00065g01524 Petunia axillaris HOM05D000797 ORTHO05D007726 1.4e-09 66.6 64 51.6
AT3G06850 Arabidopsis thaliana HOM05D000797 ORTHO05D007726 1.9e-09 66.2 63 55.6
CSS0044303 Camellia sinensis var. sinensis HOM05D000797 ORTHO05D007726 2.4e-09 65.9 55 60.0
Gohir.A09G237700 Gossypium hirsutum HOM05D000797 ORTHO05D007726 2.4e-09 65.9 92 44.6
Gohir.D09G238600 Gossypium hirsutum HOM05D000797 ORTHO05D007726 2.4e-09 65.9 90 44.4
CANSAT78G2398 Cannabis sativa HOM05D000797 ORTHO05D007726 3.2e-09 65.5 56 57.1
ClCG05G006220 Citrullus lanatus HOM05D000797 ORTHO05D007726 3.2e-09 65.5 67 52.2
Gorai.006G261300 Gossypium raimondii HOM05D000797 ORTHO05D007726 3.2e-09 65.5 58 60.3
PGR004G0333 Punica granatum HOM05D000797 ORTHO05D007726 3.2e-09 65.5 47 66.0
Solyc01g066520.3 Solanum lycopersicum HOM05D000797 ORTHO05D007726 3.2e-09 65.5 64 51.6
Sopen01g028100 Solanum pennellii HOM05D000797 ORTHO05D007726 3.2e-09 65.5 64 51.6
Thecc.04G288000 Theobroma cacao HOM05D000797 ORTHO05D007726 3.2e-09 65.5 53 60.4
Sc13g0003290 Simmondsia chinensis HOM05D000797 ORTHO05D007726 4.1e-09 65.1 54 61.1
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 5.4e-09 64.7 53 60.4
CAN.G1137.1 Capsicum annuum HOM05D000797 ORTHO05D007726 7.1e-09 64.3 67 50.7
Lj4g0021722 Lotus japonicus HOM05D004309 ORTHO05D007726 7.1e-09 64.3 51 62.7
MBI19_g34790_MAGBIO Magnolia biondii HOM05D000797 ORTHO05D007726 7.1e-09 64.3 62 51.6
THA.LOC104818913 Tarenaya hassleriana HOM05D000797 ORTHO05D007726 9.2e-09 63.9 55 58.2
Carub.0003s0638 Capsella rubella HOM05D000797 ORTHO05D007726 1.2e-08 63.5 62 53.2
CARHR081460 Cardamine hirsuta HOM05D000797 ORTHO05D007726 1.6e-08 63.2 57 57.9
Cpa.g.sc50.171 Carica papaya HOM05D000797 ORTHO05D007726 1.6e-08 63.2 74 50.0
Medtr4g120220 Medicago truncatula HOM05D000797 ORTHO05D007726 1.6e-08 63.2 59 59.3
TPR.G3182 Trifolium pratense HOM05D000797 ORTHO05D007726 1.6e-08 63.2 60 58.3
Potri.008G219700 Populus trichocarpa HOM05D000797 ORTHO05D007726 2.1e-08 62.8 55 56.4
Duzib212G0824 Durio zibethinus HOM05D000797 ORTHO05D007726 2.7e-08 62.4 58 55.2
Phvul.003G106700 Phaseolus vulgaris HOM05D000797 ORTHO05D007726 2.7e-08 62.4 78 48.7
Psat4g026280 Pisum sativum HOM05D000797 ORTHO05D007726 2.7e-08 62.4 59 59.3
Sed0017832 Sechium edule HOM05D000797 ORTHO05D007726 2.7e-08 62.4 53 58.5
BraA03t12671Z Brassica rapa HOM05D000797 ORTHO05D007726 3.5e-08 62.0 65 53.8
QL06p010151 Quercus lobata HOM05D000797 ORTHO05D007726 3.5e-08 62.0 51 58.8
Atru.chr4.2892 Acer truncatum HOM05D000797 ORTHO05D007726 4.6e-08 61.6 41 63.4
Ciclev10004761m.g Citrus clementina HOM05D000797 ORTHO05D007726 4.6e-08 61.6 54 55.6
SalBow2G1825 Salvia bowleyana HOM05D000797 ORTHO05D007726 4.6e-08 61.6 60 48.3
TAR362G0149 Trochodendron aralioides HOM05D001727 ORTHO05D007726 4.6e-08 61.6 41 68.3
HPP92_002152 Vanilla planifolia HOM05D000797 ORTHO05D007726 6.0e-08 61.2 51 54.9
Zm00001eb130640 Zea mays HOM05D000797 ORTHO05D007726 6.0e-08 61.2 55 60.0
BNapus_Darmor_BZH_scaffold_117p00130 Brassica napus HOM05D000797 ORTHO05D007726 7.8e-08 60.8 63 57.1
Nitab4.5_0000695g0030 Nicotiana tabacum HOM05D000797 ORTHO05D007726 7.8e-08 60.8 53 56.6
PSO210G3438 Papaver somniferum HOM05D000797 ORTHO05D007726 7.8e-08 60.8 58 58.6
VMungo1215G0560 Vigna mungo HOM05D000797 ORTHO05D007726 7.8e-08 60.8 58 56.9
Actinidia19577 Actinidia chinensis HOM05D000797 ORTHO05D007726 1.0e-07 60.5 55 54.5
Nitab4.5_0005312g0020 Nicotiana tabacum HOM05D000797 ORTHO05D007726 1.0e-07 60.5 45 64.4
Lalb_Chr12g0196651 Lupinus albus HOM05D000797 ORTHO05D007726 1.7e-07 59.7 51 60.8
Sp3g05810 Schrenkiella parvula HOM05D000797 ORTHO05D007726 1.7e-07 59.7 54 63.0
arahy.Tifrunner.gnm1.ann1.QU6QXS Arachis hypogaea HOM05D000797 ORTHO05D007726 2.3e-07 59.3 51 60.8
MSTRG.10111 Avicennia marina HOM05D000797 ORTHO05D007726 3.0e-07 58.9 55 54.5
AUR62018093 Chenopodium quinoa HOM05D000797 ORTHO05D007726 3.9e-07 58.5 58 48.3
Glyma.07G246000 Glycine max HOM05D000797 ORTHO05D007726 3.9e-07 58.5 58 55.2
PSO832G1872 Papaver somniferum HOM05D000797 ORTHO05D007726 5.1e-07 58.2 41 65.9
Ca_21482_v3 Cicer arietinum L. HOM05D000797 ORTHO05D007726 6.6e-07 57.8 58 55.2
Thhalv10020615m.g Eutrema salsugineum HOM05D000797 ORTHO05D007726 8.6e-07 57.4 59 57.6
SGA_v2.0_scaffold67G22605 Striga asiatica HOM05D000797 ORTHO05D007726 8.6e-07 57.4 64 46.9
arahy.Tifrunner.gnm1.ann1.BZZQ7R Arachis hypogaea HOM05D000797 ORTHO05D007726 1.1e-06 57.0 53 60.4
arahy.Tifrunner.gnm1.ann1.YC35GQ Arachis hypogaea HOM05D004309 ORTHO05D007726 1.1e-06 57.0 53 60.4
C03p42490 Brassica napus HOM05D000797 ORTHO05D007726 1.1e-06 57.0 70 47.1
BolC3t16519H Brassica oleracea HOM05D000797 ORTHO05D007726 1.1e-06 57.0 70 47.1
unitig_748.g8725 Utricularia gibba HOM05D000797 ORTHO05D007726 1.1e-06 57.0 55 61.8
HanXRQChr17g0536081 Helianthus annuus HOM05D000797 ORTHO05D007726 1.5e-06 56.6 52 53.8
Os01g0314100 Oryza sativa ssp. japonica HOM05D000797 ORTHO05D007726 1.5e-06 56.6 55 52.7
Aqoxy5G00779 Aquilegia oxysepala HOM05D000797 ORTHO05D007726 1.9e-06 56.2 63 47.6
ECA246G2476 Erigeron canadensis HOM05D000797 ORTHO05D007726 1.9e-06 56.2 52 53.8
DCAR_027056 Daucus carota HOM05D004309 ORTHO05D005588 3.3e-06 55.5 49 55.1
A03p34910 Brassica napus HOM05D000797 ORTHO05D007726 5.6e-06 54.7 70 48.6
Glyma.17G028000 Glycine max HOM05D000797 ORTHO05D007726 5.6e-06 54.7 58 50.0
Migut.G00134 Erythranthe guttata HOM05D000797 ORTHO05D007726 7.3e-06 54.3 66 48.5
Hund20525 Selenicereus undatus HOM05D000797 ORTHO05D007726 7.3e-06 54.3 66 42.4


User provided reference genes

Program Settings