Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g20700 Fragaria vesca HOM05D000005 ORTHO05D022599 2.0e-132 475.7 227 100.0
FAN24G3126 Fragaria x ananassa HOM05D000005 ORTHO05D000012 3.0e-120 435.3 207 99.5
FAN15G0869 Fragaria x ananassa HOM05D000005 ORTHO05D000012 3.4e-108 395.2 207 92.8
FAN20G0848 Fragaria x ananassa HOM05D000005 ORTHO05D000012 9.0e-77 290.8 156 90.4
FAN24G1486 Fragaria x ananassa HOM05D000005 ORTHO05D000012 8.2e-38 161.4 186 48.9
FvH4_2g20310 Fragaria vesca HOM05D000005 ORTHO05D000012 2.4e-37 159.8 186 48.4
FAN27G2507 Fragaria x ananassa HOM05D000005 ORTHO05D000012 7.2e-34 148.3 186 45.7
RcHm_v2.0_Chr6g0286441 Rosa chinensis HOM05D000005 ORTHO05D022599 1.8e-32 143.7 225 38.7
Prupe.3G010300 Prunus persica HOM05D000005 ORTHO05D000012 3.0e-32 142.9 195 40.5
Prupe.3G130900 Prunus persica HOM05D000005 ORTHO05D000012 8.8e-32 141.4 200 41.0
Prupe.2G101900 Prunus persica HOM05D000005 ORTHO05D000012 2.0e-31 140.2 175 42.9
Prupe.3G130800 Prunus persica HOM05D000005 ORTHO05D000012 2.0e-31 140.2 195 40.0
MD17G1277700 Malus domestica HOM05D000005 ORTHO05D000012 2.6e-31 139.8 183 45.4
MD07G1079200 Malus domestica HOM05D000005 ORTHO05D000012 1.8e-29 133.7 195 41.0
MD07G1079400 Malus domestica HOM05D000005 ORTHO05D000012 2.7e-28 129.8 194 40.7
MD15G1375200 Malus domestica HOM05D000005 ORTHO05D000012 2.9e-27 126.3 195 39.0
Hma1.2p1_0188F.1_g082485 Hydrangea macrophylla HOM05D000005 ORTHO05D000012 1.9e-26 123.6 117 53.0
Prupe.3G009700 Prunus persica HOM05D000005 ORTHO05D000012 8.0e-25 118.2 184 40.2
RcHm_v2.0_Chr4g0405381 Rosa chinensis HOM05D000005 ORTHO05D000012 2.3e-24 116.7 177 40.7
Prupe.3G010100 Prunus persica HOM05D000005 ORTHO05D000012 3.4e-23 112.8 121 51.2
CSS0009639 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 4.0e-16 89.4 171 36.8
MD08G1019200 Malus domestica HOM05D000005 ORTHO05D000012 5.2e-16 89.0 137 38.7
Dinv38455 Davidia involucrata HOM05D000005 ORTHO05D000012 1.5e-15 87.4 166 34.3
MD07G1112300 Malus domestica HOM05D000005 ORTHO05D000012 2.6e-15 86.7 116 39.7
Dinv29641 Davidia involucrata HOM05D000005 ORTHO05D000012 4.4e-15 85.9 166 35.5
Dinv38459 Davidia involucrata HOM05D000005 ORTHO05D000012 4.4e-15 85.9 115 40.0
Dinv38448 Davidia involucrata HOM05D000005 ORTHO05D000012 9.8e-15 84.7 174 31.0
Potri.007G099700 Populus trichocarpa HOM05D000005 ORTHO05D000012 1.3e-14 84.3 120 38.3
Dinv38450 Davidia involucrata HOM05D000005 ORTHO05D000012 3.7e-14 82.8 113 38.1
Dinv38457 Davidia involucrata HOM05D010983 ORTHO05D000012 3.7e-14 82.8 115 38.3
MD07G1101700 Malus domestica HOM05D000005 ORTHO05D000012 3.7e-14 82.8 125 38.4
CSS0000854 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 6.4e-14 82.0 141 31.9
MD17G1275000 Malus domestica HOM05D000005 ORTHO05D000012 1.1e-13 81.3 156 35.3
Dinv29649 Davidia involucrata HOM05D000005 ORTHO05D000012 2.4e-13 80.1 113 38.1
MD12G1193200 Malus domestica HOM05D000005 ORTHO05D000012 4.1e-13 79.3 120 38.3
MD17G1276600 Malus domestica HOM05D000005 ORTHO05D000012 9.2e-13 78.2 125 38.4
FvH4_2g20301 Fragaria vesca HOM05D031332 ORTHO05D022599 1.2e-12 77.8 101 46.5
FvH4_7g10750 Fragaria vesca HOM05D000005 ORTHO05D000012 1.2e-12 77.8 185 31.4
vmacro01620 Vaccinium macrocarpon HOM05D000005 ORTHO05D000012 1.2e-12 77.8 159 35.2
vmacro23186 Vaccinium macrocarpon HOM05D000005 ORTHO05D000012 1.2e-12 77.8 159 35.2
MD17G1274300 Malus domestica HOM05D000005 ORTHO05D000012 1.6e-12 77.4 132 36.4
CSS0032356 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 2.0e-12 77.0 140 29.3
CSS0014375 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 2.7e-12 76.6 124 31.5
Manes.06G012900 Manihot esculenta HOM05D000005 ORTHO05D000012 2.7e-12 76.6 147 32.7
FAN06G2906 Fragaria x ananassa HOM05D000005 ORTHO05D000012 3.5e-12 76.3 115 36.5
Lj3C725T19 Lonicera japonica HOM05D000005 ORTHO05D000012 3.5e-12 76.3 118 37.3
CSS0014612 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 4.6e-12 75.9 121 32.2
CSS0020094 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 4.6e-12 75.9 128 35.9
Dinv38451 Davidia involucrata HOM05D000005 ORTHO05D000012 4.6e-12 75.9 116 37.1
FAN03G1873 Fragaria x ananassa HOM05D000005 ORTHO05D000012 4.6e-12 75.9 186 28.5
Prupe.6G083200 Prunus persica HOM05D000005 ORTHO05D000012 4.6e-12 75.9 193 31.6
RcHm_v2.0_Chr1g0348311 Rosa chinensis HOM05D000005 ORTHO05D000012 4.6e-12 75.9 178 28.7
CSS0037441 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 5.9e-12 75.5 175 30.9
Dinv38447 Davidia involucrata HOM05D000005 ORTHO05D000012 5.9e-12 75.5 93 41.9
CAN.G1372.1 Capsicum annuum HOM05D000005 ORTHO05D000012 7.8e-12 75.1 180 31.7
MD07G1102200 Malus domestica HOM05D000005 ORTHO05D000012 7.8e-12 75.1 141 34.8
Prupe.2G126800 Prunus persica HOM05D000005 ORTHO05D000012 1.3e-11 74.3 119 33.6
Manes.11G061000 Manihot esculenta HOM05D000005 ORTHO05D000012 1.7e-11 73.9 152 30.3
CSS0002987 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 3.0e-11 73.2 191 27.2
Dinv29646 Davidia involucrata HOM05D000005 ORTHO05D000012 3.0e-11 73.2 125 39.2
Dinv38449 Davidia involucrata HOM05D000005 ORTHO05D000012 3.0e-11 73.2 110 40.9
FAN06G4048 Fragaria x ananassa HOM05D000005 ORTHO05D000012 3.0e-11 73.2 198 31.8
Sc03g0008120 Simmondsia chinensis HOM05D000005 ORTHO05D000012 3.0e-11 73.2 177 29.4
CAN.G1379.4 Capsicum annuum HOM05D000005 ORTHO05D000012 3.9e-11 72.8 204 28.4
Actinidia00144 Actinidia chinensis HOM05D000005 ORTHO05D000012 5.0e-11 72.4 117 37.6
Nitab4.5_0001085g0170 Nicotiana tabacum HOM05D000005 ORTHO05D000012 5.0e-11 72.4 132 32.6
Nitab4.5_0006159g0050 Nicotiana tabacum HOM05D000005 ORTHO05D000012 5.0e-11 72.4 177 31.1
MD05G1140100 Malus domestica HOM05D000005 ORTHO05D000012 6.6e-11 72.0 125 33.6
CSS0031517 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 8.6e-11 71.6 156 33.3
Dinv00400 Davidia involucrata HOM05D000005 ORTHO05D000012 8.6e-11 71.6 94 40.4
Lsat_1_v5_gn_8_113021 Lactuca sativa HOM05D000005 ORTHO05D000012 8.6e-11 71.6 122 31.1
MD05G1152200 Malus domestica HOM05D000005 ORTHO05D000012 8.6e-11 71.6 121 34.7
Prupe.2G126700 Prunus persica HOM05D000005 ORTHO05D000012 8.6e-11 71.6 116 37.1
PGSC0003DMG400013098 Solanum tuberosum HOM05D000005 ORTHO05D000012 8.6e-11 71.6 122 34.4
Prupe.4G260900 Prunus persica HOM05D000005 ORTHO05D000012 1.1e-10 71.2 79 41.8
Prupe.8G185200 Prunus persica HOM05D000005 ORTHO05D000012 1.5e-10 70.9 116 35.3
RcHm_v2.0_Chr1g0348361 Rosa chinensis HOM05D000005 ORTHO05D000012 1.5e-10 70.9 177 27.7
Peaxi162Scf00194g01013 Petunia axillaris HOM05D000005 ORTHO05D000012 1.9e-10 70.5 144 30.6
Prupe.2G121000 Prunus persica HOM05D000005 ORTHO05D000012 2.5e-10 70.1 119 36.1
RcHm_v2.0_Chr1g0348371 Rosa chinensis HOM05D000005 ORTHO05D000012 2.5e-10 70.1 118 33.9
Peaxi162Scf01000g00019 Petunia axillaris HOM05D000005 ORTHO05D000012 3.3e-10 69.7 130 30.8
Dinv38452 Davidia involucrata HOM05D000005 ORTHO05D000012 4.3e-10 69.3 97 42.3
vmacro01622 Vaccinium macrocarpon HOM05D000005 ORTHO05D000012 4.3e-10 69.3 132 34.1
Prupe.2G126300 Prunus persica HOM05D000005 ORTHO05D000012 5.6e-10 68.9 120 36.7
Prupe.6G132100 Prunus persica HOM05D000005 ORTHO05D000012 7.3e-10 68.6 119 32.8
Cpa.g.sc4.91 Carica papaya HOM05D000005 ORTHO05D000012 1.2e-09 67.8 104 35.6
DCAR_029364 Daucus carota HOM05D000076 ORTHO05D006537 1.6e-09 67.4 115 33.0
CSS0031862 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 2.1e-09 67.0 91 41.8
CSS0034467 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 2.1e-09 67.0 177 29.4
Nitab4.5_0000288g0100 Nicotiana tabacum HOM05D000005 ORTHO05D000012 2.8e-09 66.6 195 28.7
Peaxi162Scf00000g00029 Petunia axillaris HOM05D000005 ORTHO05D000012 3.6e-09 66.2 175 30.3
DCAR_026632 Daucus carota HOM05D000005 ORTHO05D000012 4.7e-09 65.9 113 34.5
FAN24G1899 Fragaria x ananassa HOM05D000005 ORTHO05D000012 6.2e-09 65.5 128 32.0
CSS0016728 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 8.0e-09 65.1 116 32.8
FvH4_2g17330 Fragaria vesca HOM05D000005 ORTHO05D000012 8.0e-09 65.1 128 32.0
Nitab4.5_0013055g0010 Nicotiana tabacum HOM05D000005 ORTHO05D000012 8.0e-09 65.1 195 28.2
Duzib128G1817 Durio zibethinus HOM05D000005 ORTHO05D000012 1.0e-08 64.7 118 28.8
RcHm_v2.0_Chr1g0346891 Rosa chinensis HOM05D000005 ORTHO05D000012 1.0e-08 64.7 122 26.2
HanXRQChr16g0520121 Helianthus annuus HOM05D000005 ORTHO05D000012 1.4e-08 64.3 122 32.8
Prupe.2G126200 Prunus persica HOM05D000005 ORTHO05D000012 1.4e-08 64.3 100 36.0
Prupe.2G126600 Prunus persica HOM05D000005 ORTHO05D000012 1.4e-08 64.3 123 35.8
Dinv01685 Davidia involucrata HOM05D000005 ORTHO05D000012 1.8e-08 63.9 113 34.5
Dinv29640 Davidia involucrata HOM05D000005 ORTHO05D000012 1.8e-08 63.9 113 35.4
FvH4_7g10510 Fragaria vesca HOM05D000005 ORTHO05D000012 1.8e-08 63.9 173 29.5
CSS0040509 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 2.3e-08 63.5 117 35.9
Lsat_1_v5_gn_1_98941 Lactuca sativa HOM05D000005 ORTHO05D000012 2.3e-08 63.5 136 28.7
Lsat_1_v5_gn_8_112140 Lactuca sativa HOM05D000005 ORTHO05D000012 2.3e-08 63.5 110 34.5
Nitab4.5_0001085g0150 Nicotiana tabacum HOM05D000005 ORTHO05D000012 2.3e-08 63.5 208 26.9
Potri.019G018800 Populus trichocarpa HOM05D000005 ORTHO05D000012 2.3e-08 63.5 111 34.2
Sopen02g010550 Solanum pennellii HOM05D000005 ORTHO05D000012 2.3e-08 63.5 101 33.7
PGSC0003DMG400013094 Solanum tuberosum HOM05D000005 ORTHO05D000012 2.3e-08 63.5 127 32.3
Lsat_1_v5_gn_8_112901 Lactuca sativa HOM05D000005 ORTHO05D000012 3.1e-08 63.2 125 31.2
Nn8g40948 Nelumbo nucifera HOM05D000005 ORTHO05D000012 3.1e-08 63.2 125 28.0
Solyc01g102850.3 Solanum lycopersicum HOM05D000005 ORTHO05D000012 3.1e-08 63.2 175 26.3
PGSC0003DMG400018256 Solanum tuberosum HOM05D000005 ORTHO05D000012 3.1e-08 63.2 94 34.0
FvH4_7g10520 Fragaria vesca HOM05D000005 ORTHO05D000012 4.0e-08 62.8 167 28.7
FAN03G2198 Fragaria x ananassa HOM05D000005 ORTHO05D000012 4.0e-08 62.8 167 28.1
FAN10G1219 Fragaria x ananassa HOM05D000005 ORTHO05D000012 4.0e-08 62.8 144 30.6
Prupe.2G126100 Prunus persica HOM05D000005 ORTHO05D000012 4.0e-08 62.8 111 35.1
Solyc02g032200.4 Solanum lycopersicum HOM05D000005 ORTHO05D000012 4.0e-08 62.8 101 33.7
Lsat_1_v5_gn_9_58521 Lactuca sativa HOM05D000005 ORTHO05D000012 5.2e-08 62.4 118 31.4
DCAR_001436 Daucus carota HOM05D000005 ORTHO05D000012 8.9e-08 61.6 125 31.2
FvH4_7g09800 Fragaria vesca HOM05D000005 ORTHO05D000012 8.9e-08 61.6 128 30.5
FAN06G0964 Fragaria x ananassa HOM05D000005 ORTHO05D000012 8.9e-08 61.6 128 30.5
FAN06G3785 Fragaria x ananassa HOM05D000005 ORTHO05D000012 8.9e-08 61.6 128 30.5
Lj5A794T35 Lonicera japonica HOM05D011560 ORTHO05D000012 8.9e-08 61.6 153 32.7
MD17G1072500 Malus domestica HOM05D000005 ORTHO05D000012 1.2e-07 61.2 120 38.3
Sopen01g045250 Solanum pennellii HOM05D000005 ORTHO05D000012 1.2e-07 61.2 174 24.7
Cpa.g.sc4.86 Carica papaya HOM05D000005 ORTHO05D000012 2.0e-07 60.5 104 31.7
FAN27G1045 Fragaria x ananassa HOM05D031332 ORTHO05D022599 2.6e-07 60.1 127 36.2
DCAR_002255 Daucus carota HOM05D000005 ORTHO05D000012 3.4e-07 59.7 134 29.9
FAN10G0336 Fragaria x ananassa HOM05D000005 ORTHO05D000012 3.4e-07 59.7 107 29.9
Gohir.D03G164300 Gossypium hirsutum HOM05D000005 ORTHO05D000012 3.4e-07 59.7 119 28.6
Gorai.003G173800 Gossypium raimondii HOM05D000005 ORTHO05D000012 3.4e-07 59.7 119 28.6
Manes.14G165151 Manihot esculenta HOM05D000005 ORTHO05D000012 3.4e-07 59.7 110 34.5
Lsat_1_v5_gn_7_48041 Lactuca sativa HOM05D000005 ORTHO05D000012 4.4e-07 59.3 132 31.8
Lj5P824T16 Lonicera japonica HOM05D011560 ORTHO05D000012 4.4e-07 59.3 117 34.2
CSS0004944 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 5.8e-07 58.9 72 40.3
ECA248G1783 Erigeron canadensis HOM05D000005 ORTHO05D000012 5.8e-07 58.9 183 26.8
FAN03G1357 Fragaria x ananassa HOM05D000005 ORTHO05D000012 5.8e-07 58.9 127 29.1
Gorai.003G172700 Gossypium raimondii HOM05D000005 ORTHO05D000012 5.8e-07 58.9 119 27.7
Lsat_1_v5_gn_8_112941 Lactuca sativa HOM05D000005 ORTHO05D000012 5.8e-07 58.9 116 30.2
Cpa.g.sc4.82 Carica papaya HOM05D000005 ORTHO05D000012 7.5e-07 58.5 101 34.7
Duzib128G0109 Durio zibethinus HOM05D000005 ORTHO05D000012 7.5e-07 58.5 95 30.5
Gohir.D03G164700 Gossypium hirsutum HOM05D000005 ORTHO05D000012 7.5e-07 58.5 119 27.7
Gorai.003G173100 Gossypium raimondii HOM05D000005 ORTHO05D000012 7.5e-07 58.5 119 27.7
Gorai.003G173900 Gossypium raimondii HOM05D000005 ORTHO05D000012 7.5e-07 58.5 119 27.7
Gorai.003G174400 Gossypium raimondii HOM05D000005 ORTHO05D000012 7.5e-07 58.5 119 27.7
Potri.005G206400 Populus trichocarpa HOM05D000005 ORTHO05D000012 7.5e-07 58.5 126 32.5
Gohir.D03G163750 Gossypium hirsutum HOM05D000005 ORTHO05D000012 9.8e-07 58.2 119 27.7
Gohir.D03G163851 Gossypium hirsutum HOM05D000005 ORTHO05D000012 9.8e-07 58.2 119 27.7
Lj5A791G16 Lonicera japonica HOM05D011560 ORTHO05D000012 9.8e-07 58.2 147 31.3
DCAR_004352 Daucus carota HOM05D000005 ORTHO05D000012 1.3e-06 57.8 121 31.4
Gohir.D03G164000 Gossypium hirsutum HOM05D000005 ORTHO05D000012 1.3e-06 57.8 119 29.4
Lj5A790T7 Lonicera japonica HOM05D011560 ORTHO05D000012 1.7e-06 57.4 138 31.9
Lj5C825T1 Lonicera japonica HOM05D011560 ORTHO05D000012 1.7e-06 57.4 152 32.9
Nitab4.5_0003247g0040 Nicotiana tabacum HOM05D000005 ORTHO05D000012 1.7e-06 57.4 104 32.7
RcHm_v2.0_Chr1g0348331 Rosa chinensis HOM05D000005 ORTHO05D000012 1.7e-06 57.4 105 33.3
PGSC0003DMG401020721 Solanum tuberosum HOM05D000005 ORTHO05D000012 1.7e-06 57.4 107 30.8
PGSC0003DMG402020721 Solanum tuberosum HOM05D000005 ORTHO05D000012 1.7e-06 57.4 107 30.8
Lsat_1_v5_gn_2_60401 Lactuca sativa HOM05D000005 ORTHO05D000012 2.2e-06 57.0 119 28.6
Sabra02G0045400 Salix brachista HOM05D000005 ORTHO05D000012 2.2e-06 57.0 119 27.7
Gorai.003G172400 Gossypium raimondii HOM05D000005 ORTHO05D000012 2.9e-06 56.6 119 26.9
Gorai.003G173400 Gossypium raimondii HOM05D000005 ORTHO05D000012 2.9e-06 56.6 119 26.9
Lsat_1_v5_gn_8_112841 Lactuca sativa HOM05D000005 ORTHO05D000012 2.9e-06 56.6 183 26.8
MD02G1264900 Malus domestica HOM05D000005 ORTHO05D000012 2.9e-06 56.6 77 40.3
DCAR_026631 Daucus carota HOM05D000005 ORTHO05D000012 3.7e-06 56.2 106 33.0
Gohir.D03G163600 Gossypium hirsutum HOM05D000005 ORTHO05D000012 3.7e-06 56.2 119 26.9
Gohir.D03G163801 Gossypium hirsutum HOM05D000005 ORTHO05D000012 3.7e-06 56.2 117 27.4
Lsat_1_v5_gn_1_102041 Lactuca sativa HOM05D000005 ORTHO05D000012 3.7e-06 56.2 112 28.6
Lsat_1_v5_gn_1_98921 Lactuca sativa HOM05D000005 ORTHO05D000012 3.7e-06 56.2 124 33.1
Lsat_1_v5_gn_8_114481 Lactuca sativa HOM05D000005 ORTHO05D000012 3.7e-06 56.2 115 28.7
Lj5P787T15 Lonicera japonica HOM05D011560 ORTHO05D000012 3.7e-06 56.2 98 34.7
Gohir.D03G163700 Gossypium hirsutum HOM05D000005 ORTHO05D000012 4.9e-06 55.8 115 27.8
Gohir.D03G164200 Gossypium hirsutum HOM05D000005 ORTHO05D000012 4.9e-06 55.8 119 27.7
Gohir.D03G164800 Gossypium hirsutum HOM05D000005 ORTHO05D000012 4.9e-06 55.8 119 26.9
Lj2C634G4 Lonicera japonica HOM05D011560 ORTHO05D000012 4.9e-06 55.8 74 39.2
MD15G1376300 Malus domestica HOM05D000005 ORTHO05D000012 4.9e-06 55.8 110 39.1
TWI23G0009 Tripterygium wilfordii HOM05D000005 ORTHO05D000012 4.9e-06 55.8 100 31.0
ECA240G2995 Erigeron canadensis HOM05D000005 ORTHO05D000012 6.4e-06 55.5 192 26.0
HanXRQChr13g0403841 Helianthus annuus HOM05D000005 ORTHO05D000012 6.4e-06 55.5 120 31.7
Lsat_1_v5_gn_1_102280 Lactuca sativa HOM05D000005 ORTHO05D000012 6.4e-06 55.5 164 25.0
Prupe.2G135700 Prunus persica HOM05D000005 ORTHO05D000012 6.4e-06 55.5 73 38.4
Dinv29645 Davidia involucrata HOM05D000005 ORTHO05D000012 8.3e-06 55.1 69 39.1


User provided reference genes

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