Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g20031 Fragaria vesca HOM05D011771 ORTHO05D014214 0.0e+00 1179.1 595 100.0
FvH4_3g29863 Fragaria vesca HOM05D011771 ORTHO05D014214 5.2e-140 502.3 268 97.0
FvH4_1g18481 Fragaria vesca HOM05D011771 ORTHO05D014214 2.9e-90 337.0 203 87.7
FvH4_4g08541 Fragaria vesca HOM05D011771 ORTHO05D014214 1.2e-67 261.9 365 47.7
FvH4_6g39361 Fragaria vesca HOM05D011771 ORTHO05D014214 2.6e-67 260.8 365 47.7
RcHm_v2.0_Chr5g0081051 Rosa chinensis HOM05D005706 ORTHO05D016446 7.9e-64 249.2 446 40.4
FvH4_1g23806 Fragaria vesca HOM05D011771 ORTHO05D014214 2.5e-62 244.2 306 50.3
FvH4_7g14385 Fragaria vesca HOM05D011771 ORTHO05D014214 6.2e-61 239.6 299 50.5
FvH4_1g15102 Fragaria vesca HOM05D011771 ORTHO05D014214 3.3e-54 217.2 152 76.3
FvH4_6g37662 Fragaria vesca HOM05D011771 ORTHO05D014214 3.1e-44 184.1 129 74.4
FvH4_1g24581 Fragaria vesca HOM05D011771 ORTHO05D014214 3.4e-43 180.6 285 44.6
FvH4_4g00983 Fragaria vesca HOM05D011771 ORTHO05D022630 2.5e-41 174.5 211 52.6
RcHm_v2.0_Chr4g0417791 Rosa chinensis HOM05D002024 ORTHO05D016446 2.9e-34 151.0 453 29.8
FvH4_7g04481 Fragaria vesca HOM05D020505 ORTHO05D198652 8.8e-31 139.4 269 39.8
FvH4_3g31747 Fragaria vesca HOM05D011771 ORTHO05D014214 4.8e-29 133.7 296 38.9
FvH4_3g23161 Fragaria vesca HOM05D011771 ORTHO05D014214 1.8e-28 131.7 214 43.9
FvH4_3g30141 Fragaria vesca HOM05D002675 ORTHO05D022630 7.7e-27 126.3 97 64.9
RcHm_v2.0_Chr5g0075961 Rosa chinensis HOM05D001888 ORTHO05D001842 7.2e-17 93.2 130 43.1
RcHm_v2.0_Chr4g0438351 Rosa chinensis HOM05D005706 ORTHO05D007474 2.0e-14 85.1 189 36.5
RcHm_v2.0_Chr2g0105341 Rosa chinensis HOM05D000103 ORTHO05D000049 7.5e-14 83.2 134 41.0
FAN12G1642 Fragaria x ananassa HOM05D005706 ORTHO05D007474 4.8e-13 80.5 166 36.7
FvH4_4g30080 Fragaria vesca HOM05D005706 ORTHO05D007474 1.4e-12 79.0 63 66.7
FAN07G0248 Fragaria x ananassa HOM05D005706 ORTHO05D007474 1.4e-12 79.0 63 66.7
FAN17G2637 Fragaria x ananassa HOM05D005706 ORTHO05D007474 1.4e-12 79.0 166 36.1
MD16G1061200 Malus domestica HOM05D005706 ORTHO05D007474 1.8e-12 78.6 147 40.1
CiPaw.05G125300 Carya illinoinensis HOM05D005706 ORTHO05D007474 3.1e-12 77.8 189 33.9
Prupe.1G286800 Prunus persica HOM05D005706 ORTHO05D007474 5.4e-12 77.0 208 33.7
RcHm_v2.0_Chr6g0274801 Rosa chinensis HOM05D004235 ORTHO05D026109 2.7e-11 74.7 129 39.5
Haze_11910 Corylus avellana HOM05D005706 ORTHO05D007474 4.5e-11 73.9 236 31.8
RcHm_v2.0_Chr4g0401881 Rosa chinensis HOM05D001801 ORTHO05D017011 4.5e-11 73.9 78 48.7
Cfa008881 Carpinus fangiana HOM05D005706 ORTHO05D007474 7.7e-11 73.2 126 40.5
QL12p030791 Quercus lobata HOM05D005706 ORTHO05D007474 1.0e-10 72.8 191 33.5
ClCG05G023710 Citrullus lanatus HOM05D005706 ORTHO05D007474 1.3e-10 72.4 147 36.7
FvH4_6g29620 Fragaria vesca HOM05D000062 ORTHO05D035406 1.3e-10 72.4 93 46.2
Dinv16733 Davidia involucrata HOM05D005706 ORTHO05D007474 2.2e-10 71.6 147 36.7
FvH4_7g28392 Fragaria vesca HOM05D003867 ORTHO05D196806 2.2e-10 71.6 169 36.1
FvH4_1g23805 Fragaria vesca HOM05D000280 ORTHO05D000632 2.9e-10 71.2 168 35.7
PGR102G0141 Punica granatum HOM05D005706 ORTHO05D007474 2.9e-10 71.2 122 41.8
Thecc.02G330500 Theobroma cacao HOM05D005706 ORTHO05D007474 2.9e-10 71.2 147 36.1
CANSAT64G1878 Cannabis sativa HOM05D005706 ORTHO05D007474 3.8e-10 70.9 250 29.2
COL.COLO4_27885 Corchorus olitorius HOM05D005706 ORTHO05D007474 3.8e-10 70.9 147 35.4
MBI19_g16673_MAGBIO Magnolia biondii HOM05D005706 ORTHO05D007474 5.0e-10 70.5 147 35.4
Eucgr.B03150 Eucalyptus grandis HOM05D005706 ORTHO05D007474 6.5e-10 70.1 149 36.9
Gohir.A13G082600 Gossypium hirsutum HOM05D005706 ORTHO05D007474 6.5e-10 70.1 147 35.4
Aqoxy3G03635 Aquilegia oxysepala HOM05D005706 ORTHO05D007474 1.1e-09 69.3 147 35.4
FvH4_3g37290 Fragaria vesca HOM05D000062 ORTHO05D035406 1.1e-09 69.3 91 49.5
Gohir.D13G082200 Gossypium hirsutum HOM05D005706 ORTHO05D007474 1.1e-09 69.3 147 35.4
RcHm_v2.0_Chr1g0363301 Rosa chinensis HOM05D000673 ORTHO05D037482 1.1e-09 69.3 288 25.0
TAR622G0768 Trochodendron aralioides HOM05D005706 ORTHO05D007474 1.1e-09 69.3 147 34.7
Gorai.013G094000 Gossypium raimondii HOM05D005706 ORTHO05D007474 1.5e-09 68.9 147 35.4
TWI31G0688 Tripterygium wilfordii HOM05D005706 ORTHO05D007474 1.5e-09 68.9 166 31.9
Ciclev10033305m.g Citrus clementina HOM05D005706 ORTHO05D007474 1.9e-09 68.6 189 32.3
MELO3C012153.2 Cucumis melo HOM05D005706 ORTHO05D007474 2.5e-09 68.2 88 46.6
FvH4_2g07541 Fragaria vesca HOM05D011771 ORTHO05D025391 2.5e-09 68.2 79 51.9
FvH4_3g22840 Fragaria vesca HOM05D003404 ORTHO05D004052 2.5e-09 68.2 59 52.5
arahy.Tifrunner.gnm1.ann1.C9N2WV Arachis hypogaea HOM05D005706 ORTHO05D007474 3.2e-09 67.8 127 38.6
CsaV3_5G033320 Cucumis sativus L. HOM05D005706 ORTHO05D007474 3.2e-09 67.8 91 45.1
Sed0000601 Sechium edule HOM05D005706 ORTHO05D007474 3.2e-09 67.8 86 45.3
Atru.chr11.1629 Acer truncatum HOM05D005706 ORTHO05D007474 4.2e-09 67.4 197 32.0
Cpa.g.sc1.124 Carica papaya HOM05D005706 ORTHO05D007474 4.2e-09 67.4 147 35.4
arahy.Tifrunner.gnm1.ann1.ULTQ00 Arachis hypogaea HOM05D005706 ORTHO05D007474 5.5e-09 67.0 223 31.8
FvH4_4g35091 Fragaria vesca HOM05D001017 ORTHO05D014214 5.5e-09 67.0 47 68.1
Hma1.2p1_0566F.1_g179770 Hydrangea macrophylla HOM05D005706 ORTHO05D007474 5.5e-09 67.0 147 34.7
RcHm_v2.0_Chr4g0387101 Rosa chinensis HOM05D000109 ORTHO05D348560 5.5e-09 67.0 288 25.0
vmacro10424 Vaccinium macrocarpon HOM05D005706 ORTHO05D007474 9.5e-09 66.2 283 26.9
Ah.03g138910 Amaranthus hybridus HOM05D005706 ORTHO05D007474 1.2e-08 65.9 147 34.0
AT1G68980 Arabidopsis thaliana HOM05D005706 ORTHO05D007474 1.2e-08 65.9 145 33.8
AUR62003098 Chenopodium quinoa HOM05D005706 ORTHO05D007474 1.2e-08 65.9 147 34.7
Phvul.003G042400 Phaseolus vulgaris HOM05D005706 ORTHO05D007474 1.2e-08 65.9 86 46.5
Sc04g0007590 Simmondsia chinensis HOM05D005706 ORTHO05D007474 1.2e-08 65.9 147 34.0
Manes.01G027600 Manihot esculenta HOM05D005706 ORTHO05D007474 1.6e-08 65.5 65 53.8
FvH4_5g17362 Fragaria vesca HOM05D020505 ORTHO05D196828 2.1e-08 65.1 159 38.4
Potri.008G095800 Populus trichocarpa HOM05D005706 ORTHO05D007474 2.1e-08 65.1 157 33.1
Zm00001eb151120 Zea mays HOM05D005706 ORTHO05D007474 2.1e-08 65.1 148 32.4
BcaC07g41670 Brassica carinata HOM05D005706 ORTHO05D007474 2.8e-08 64.7 149 30.2
AUR62007916 Chenopodium quinoa HOM05D005706 ORTHO05D007474 2.8e-08 64.7 147 34.7
ATR0064G080 Amborella trichopoda HOM05D005706 ORTHO05D007474 3.6e-08 64.3 125 36.0
Thhalv10018264m.g Eutrema salsugineum HOM05D005706 ORTHO05D007474 4.7e-08 63.9 259 25.9
Psat0s1923g0040 Pisum sativum HOM05D005706 ORTHO05D007474 4.7e-08 63.9 147 34.0
EL10Ac6g14997 Beta vulgaris HOM05D005706 ORTHO05D007474 6.1e-08 63.5 189 27.5
Lj2g0007336 Lotus japonicus HOM05D005706 ORTHO05D007474 6.1e-08 63.5 147 35.4
Rhsim09G0127400 Rhododendron simsii HOM05D005706 ORTHO05D007474 6.1e-08 63.5 221 29.9
TPR.G23743 Trifolium pratense HOM05D005706 ORTHO05D007474 6.1e-08 63.5 243 28.0
Cc11_g11990 Coffea canephora HOM05D005706 ORTHO05D007474 8.0e-08 63.2 189 28.6
Os01g0788900 Oryza sativa ssp. japonica HOM05D005706 ORTHO05D007474 8.0e-08 63.2 147 32.7
Sopen01g035590 Solanum pennellii HOM05D005706 ORTHO05D007474 8.0e-08 63.2 147 34.7
BcaB05g24437 Brassica carinata HOM05D005706 ORTHO05D007474 1.0e-07 62.8 147 32.0
BcaB08g37461 Brassica carinata HOM05D005706 ORTHO05D007474 1.0e-07 62.8 150 32.7
C08p46850 Brassica napus HOM05D005706 ORTHO05D007474 1.0e-07 62.8 128 32.0
Oeu048142.1 Olea europaea HOM05D005706 ORTHO05D007474 1.0e-07 62.8 135 33.3
PGSC0003DMG400001725 Solanum tuberosum HOM05D005706 ORTHO05D007474 1.0e-07 62.8 147 35.4
AL2G28380 Arabidopsis lyrata HOM05D005706 ORTHO05D007474 1.4e-07 62.4 148 33.1
CARHR061860 Cardamine hirsuta HOM05D005706 ORTHO05D007474 1.4e-07 62.4 208 28.4
Solyc01g088750.3 Solanum lycopersicum HOM05D005706 ORTHO05D007474 1.4e-07 62.4 147 34.7
THA.LOC104808534 Tarenaya hassleriana HOM05D005706 ORTHO05D007474 1.4e-07 62.4 147 33.3
Carub.0002s1588 Capsella rubella HOM05D005706 ORTHO05D007474 1.8e-07 62.0 148 33.1
Lalb_Chr10g0098851 Lupinus albus HOM05D005706 ORTHO05D007474 1.8e-07 62.0 169 36.1
Nitab4.5_0002341g0050 Nicotiana tabacum HOM05D005706 ORTHO05D007474 1.8e-07 62.0 147 34.0
Sp5g24100 Schrenkiella parvula HOM05D005706 ORTHO05D007474 1.8e-07 62.0 255 25.9
Sp5g24350 Schrenkiella parvula HOM05D005706 ORTHO05D007474 1.8e-07 62.0 149 32.9
BraA02t06639Z Brassica rapa HOM05D005706 ORTHO05D007474 2.3e-07 61.6 149 32.2
CSS0014081 Camellia sinensis var. sinensis HOM05D005706 ORTHO05D007474 2.3e-07 61.6 225 28.0
Thhalv10018238m.g Eutrema salsugineum HOM05D005706 ORTHO05D007474 2.3e-07 61.6 148 32.4
FvH4_1g18482 Fragaria vesca HOM05D000001 ORTHO05D198154 2.3e-07 61.6 34 85.3
Glyma.02G116700 Glycine max HOM05D005706 ORTHO05D007474 2.3e-07 61.6 147 33.3
Nitab4.5_0000563g0130 Nicotiana tabacum HOM05D005706 ORTHO05D007474 2.3e-07 61.6 147 34.0
VMungo1215G2348 Vigna mungo HOM05D005706 ORTHO05D007474 2.3e-07 61.6 85 44.7
BcaC03g15067 Brassica carinata HOM05D005706 ORTHO05D007474 3.0e-07 61.2 149 32.9
C02p25690 Brassica napus HOM05D005706 ORTHO05D007474 3.0e-07 61.2 253 25.7
C02p26260 Brassica napus HOM05D005706 ORTHO05D007474 3.0e-07 61.2 149 32.9
BolC2t08693H Brassica oleracea HOM05D005706 ORTHO05D007474 3.0e-07 61.2 149 32.9
BraA02t06616Z Brassica rapa HOM05D005706 ORTHO05D007474 3.0e-07 61.2 189 28.0
CAN.G756.36 Capsicum annuum HOM05D005706 ORTHO05D007474 3.0e-07 61.2 86 44.2
Aa31LG4G11610 Aethionema arabicum HOM05D005706 ORTHO05D007474 4.0e-07 60.8 219 28.8
CARHR062160 Cardamine hirsuta HOM05D005706 ORTHO05D007474 4.0e-07 60.8 122 36.1
A02p15550 Brassica napus HOM05D005706 ORTHO05D007474 5.2e-07 60.5 253 25.7
DCAR_007196 Daucus carota HOM05D005706 ORTHO05D007474 5.2e-07 60.5 147 33.3
GSVIVG01012219001 Vitis vinifera HOM05D005706 ORTHO05D007474 5.2e-07 60.5 183 30.1
Medtr5g044930 Medicago truncatula HOM05D005706 ORTHO05D007474 6.8e-07 60.1 126 35.7
Medtr5g045620 Medicago truncatula HOM05D005706 ORTHO05D007474 6.8e-07 60.1 126 35.7
A02p15780 Brassica napus HOM05D005706 ORTHO05D007474 8.8e-07 59.7 149 32.2
RcHm_v2.0_Chr4g0393191 Rosa chinensis HOM05D061369 ORTHO05D010829 1.2e-06 59.3 106 39.6
PSO541G5955 Papaver somniferum HOM05D005706 ORTHO05D007474 2.6e-06 58.2 335 25.7
AT1G69290 Arabidopsis thaliana HOM05D005706 ORTHO05D007474 3.4e-06 57.8 148 32.4
HanXRQChr08g0211761 Helianthus annuus HOM05D005706 ORTHO05D007474 5.7e-06 57.0 131 34.4
Peaxi162Scf00793g00314 Petunia axillaris HOM05D005706 ORTHO05D007474 5.7e-06 57.0 147 32.7
RcHm_v2.0_Chr1g0366191 Rosa chinensis HOM05D000103 ORTHO05D000049 5.7e-06 57.0 130 38.5
BcaC03g15023 Brassica carinata HOM05D005706 ORTHO05D007474 7.5e-06 56.6 253 24.5
BolC2t08638H Brassica oleracea HOM05D005706 ORTHO05D007474 7.5e-06 56.6 253 24.5
RcHm_v2.0_Chr4g0402161 Rosa chinensis HOM05D001801 ORTHO05D017011 7.5e-06 56.6 58 51.7


User provided reference genes

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