Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g19870 Fragaria vesca HOM05D006061 ORTHO05D007450 0.0e+00 1164.8 613 100.0
RcHm_v2.0_Chr6g0285561 Rosa chinensis HOM05D006061 ORTHO05D007450 5.4e-286 987.3 613 82.2
FAN27G0211 Fragaria x ananassa HOM05D006061 ORTHO05D007450 1.4e-273 946.0 622 84.4
Prupe.8G209500 Prunus persica HOM05D006061 ORTHO05D007450 1.1e-241 840.1 615 71.4
MD10G1171000 Malus domestica HOM05D006061 ORTHO05D007450 5.2e-220 768.1 615 66.8
Cfa002517 Carpinus fangiana HOM05D006061 ORTHO05D007450 9.5e-198 694.1 612 60.8
FAN15G2648 Fragaria x ananassa HOM05D006061 ORTHO05D007450 1.4e-196 690.3 393 91.9
Thecc.01G244800 Theobroma cacao HOM05D006061 ORTHO05D007450 6.8e-188 661.4 611 58.9
Atru.chr5.1926 Acer truncatum HOM05D006061 ORTHO05D007450 1.5e-187 660.2 613 58.2
Duzib138G1183 Durio zibethinus HOM05D006061 ORTHO05D007450 2.4e-185 652.9 610 58.5
Potri.014G194800 Populus trichocarpa HOM05D006061 ORTHO05D007450 3.2e-185 652.5 613 56.3
TAR365G1230 Trochodendron aralioides HOM05D006061 ORTHO05D007450 3.6e-181 639.0 624 54.3
Ciclev10019392m.g Citrus clementina HOM05D006061 ORTHO05D007450 3.2e-177 625.9 608 57.4
Actinidia30104 Actinidia chinensis HOM05D006061 ORTHO05D007450 6.0e-176 621.7 616 53.9
Gorai.007G151600 Gossypium raimondii HOM05D006061 ORTHO05D007450 3.0e-175 619.4 611 56.1
CsaV3_7G025440 Cucumis sativus L. HOM05D006061 ORTHO05D007450 7.3e-174 614.8 612 54.7
TWI59G0704 Tripterygium wilfordii HOM05D006061 ORTHO05D007450 1.4e-172 610.5 611 56.1
CANSAT01G1389 Cannabis sativa HOM05D006061 ORTHO05D007450 2.4e-172 609.8 613 56.8
Gohir.A11G135100 Gossypium hirsutum HOM05D006061 ORTHO05D007450 3.1e-172 609.4 614 55.5
Gohir.D11G141300 Gossypium hirsutum HOM05D006061 ORTHO05D007450 3.1e-172 609.4 614 55.9
Eucgr.H00824 Eucalyptus grandis HOM05D006061 ORTHO05D007450 4.5e-171 605.5 608 54.9
Lj1g0026990 Lotus japonicus HOM05D006061 ORTHO05D007450 1.7e-170 603.6 611 53.7
Haze_24749 Corylus avellana HOM05D006061 ORTHO05D007450 9.3e-169 597.8 691 51.8
ClCG09G009420 Citrullus lanatus HOM05D006061 ORTHO05D007450 1.6e-168 597.0 612 53.1
Sabra14G0142900 Salix brachista HOM05D006061 ORTHO05D007450 1.9e-166 590.1 581 55.1
Phvul.001G168300 Phaseolus vulgaris HOM05D006061 ORTHO05D007450 5.6e-166 588.6 613 54.3
CiPaw.04G108700 Carya illinoinensis HOM05D006061 ORTHO05D007450 9.6e-166 587.8 526 59.7
Glyma.19G171100 Glycine max HOM05D006061 ORTHO05D007450 6.2e-165 585.1 609 53.7
Ca_08767_v3 Cicer arietinum L. HOM05D006061 ORTHO05D007450 2.0e-163 580.1 617 52.5
Glyma.03G169900 Glycine max HOM05D006061 ORTHO05D007450 3.4e-163 579.3 609 53.7
PGR083G1193 Punica granatum HOM05D006061 ORTHO05D007450 4.5e-163 578.9 614 52.3
GSVIVG01028489001 Vitis vinifera HOM05D006061 ORTHO05D007450 5.8e-163 578.6 574 54.5
arahy.Tifrunner.gnm1.ann1.4WTK5H Arachis hypogaea HOM05D006061 ORTHO05D007450 2.1e-160 570.1 611 51.2
arahy.Tifrunner.gnm1.ann1.J8EIPB Arachis hypogaea HOM05D006061 ORTHO05D007450 2.1e-160 570.1 611 51.2
Nn1g03086 Nelumbo nucifera HOM05D006061 ORTHO05D007450 5.3e-156 555.4 626 49.7
THA.LOC104814544 Tarenaya hassleriana HOM05D006061 ORTHO05D007450 6.9e-156 555.1 611 50.2
Sc05g0002480 Simmondsia chinensis HOM05D006061 ORTHO05D007450 1.2e-155 554.3 621 49.6
PGSC0003DMG401020085 Solanum tuberosum HOM05D006061 ORTHO05D007450 2.2e-154 550.1 632 48.9
COL.COLO4_08163 Corchorus olitorius HOM05D006061 ORTHO05D007450 6.5e-154 548.5 660 49.7
Psat3g050240 Pisum sativum HOM05D006061 ORTHO05D007450 8.4e-154 548.1 615 50.2
TPR.G7560 Trifolium pratense HOM05D006061 ORTHO05D007450 1.6e-152 543.9 622 51.1
Sopen06g035030 Solanum pennellii HOM05D006061 ORTHO05D007450 1.3e-151 540.8 632 48.3
AUR62008856 Chenopodium quinoa HOM05D006061 ORTHO05D007450 5.1e-151 538.9 625 49.3
Solyc06g083640.4 Solanum lycopersicum HOM05D006061 ORTHO05D007450 1.1e-150 537.7 632 47.9
MBI07_g08916_MAGBIO Magnolia biondii HOM05D006061 ORTHO05D007450 6.3e-149 531.9 631 47.9
Nitab4.5_0002085g0150 Nicotiana tabacum HOM05D006061 ORTHO05D007450 6.9e-148 528.5 629 47.4
Aqoxy5G00054 Aquilegia oxysepala HOM05D006061 ORTHO05D007450 9.0e-148 528.1 631 47.4
Medtr7g099450 Medicago truncatula HOM05D006061 ORTHO05D007450 5.9e-147 525.4 627 49.0
Nitab4.5_0006211g0030 Nicotiana tabacum HOM05D006061 ORTHO05D007450 7.7e-147 525.0 629 46.9
Peaxi162Scf00517g00313 Petunia axillaris HOM05D006061 ORTHO05D007450 1.7e-146 523.9 643 46.7
CAN.G771.51 Capsicum annuum HOM05D006061 ORTHO05D007450 3.2e-145 519.6 646 46.1
SalBow6G4925 Salvia bowleyana HOM05D006061 ORTHO05D007450 3.2e-145 519.6 625 45.8
Hund05498 Selenicereus undatus HOM05D006061 ORTHO05D007450 1.4e-143 514.2 628 47.1
Manes.12G040800 Manihot esculenta HOM05D006061 ORTHO05D007450 3.9e-143 512.7 481 58.4
PSO170G3920 Papaver somniferum HOM05D006061 ORTHO05D007450 2.5e-142 510.0 628 46.2
Lj1A80G16 Lonicera japonica HOM05D006061 ORTHO05D007450 9.7e-142 508.1 633 45.5
EL10Ac7g17761 Beta vulgaris HOM05D006061 ORTHO05D007450 2.2e-141 506.9 638 45.9
SGA_v2.0_scaffold3G01591 Striga asiatica HOM05D006061 ORTHO05D007450 4.8e-141 505.8 645 45.6
Migut.N02246 Erythranthe guttata HOM05D006061 ORTHO05D007450 1.1e-140 504.6 625 46.1
AL3G47870 Arabidopsis lyrata HOM05D006061 ORTHO05D007450 3.1e-140 503.1 614 46.9
MSTRG.12506 Avicennia marina HOM05D006061 ORTHO05D007450 1.2e-139 501.1 626 46.0
BcaC06g36697 Brassica carinata HOM05D006061 ORTHO05D007450 2.0e-139 500.4 612 47.1
BolC7t40535H Brassica oleracea HOM05D006061 ORTHO05D007450 2.0e-139 500.4 612 47.1
AT2G20210 Arabidopsis thaliana HOM05D006061 ORTHO05D007450 2.6e-139 500.0 616 47.7
Aa31LG8G17130 Aethionema arabicum HOM05D006061 ORTHO05D007450 5.9e-139 498.8 614 47.2
C07p00980 Brassica napus HOM05D006061 ORTHO05D007450 5.9e-139 498.8 612 46.9
Thhalv10001935m.g Eutrema salsugineum HOM05D006061 ORTHO05D007450 1.9e-137 493.8 616 47.6
BcaB03g16813 Brassica carinata HOM05D006061 ORTHO05D007450 3.2e-137 493.0 616 46.3
HanXRQChr13g0409031 Helianthus annuus HOM05D006061 ORTHO05D007450 5.5e-137 492.3 610 44.6
Lsat_1_v5_gn_8_90281 Lactuca sativa HOM05D006061 ORTHO05D007450 1.4e-135 487.6 620 44.5
BraA07t27847Z Brassica rapa HOM05D006061 ORTHO05D007450 6.7e-135 485.3 613 46.2
A07p00530 Brassica napus HOM05D006061 ORTHO05D007450 1.5e-134 484.2 614 46.3
Ah.15g093400 Amaranthus hybridus HOM05D006061 ORTHO05D007450 3.3e-134 483.0 621 45.9
Rhsim13G0041800 Rhododendron simsii HOM05D006061 ORTHO05D000758 4.8e-133 479.2 719 42.3
ECA236G2978 Erigeron canadensis HOM05D006061 ORTHO05D000758 5.7e-118 429.1 617 41.0
Cc01_g08490 Coffea canephora HOM05D006061 ORTHO05D007450 1.5e-113 414.5 478 46.4
vmacro02729 Vaccinium macrocarpon HOM05D006061 ORTHO05D007450 2.1e-112 410.6 394 56.3
Sp3g33450 Schrenkiella parvula HOM05D006061 ORTHO05D007450 7.7e-107 392.1 445 51.2
ATR0787G120 Amborella trichopoda HOM05D006061 ORTHO05D007450 1.2e-104 384.8 652 39.3
Carub.0003s3454 Capsella rubella HOM05D006061 ORTHO05D007450 4.4e-102 376.3 484 46.7
AUR62025388 Chenopodium quinoa HOM05D006061 ORTHO05D007450 4.4e-94 349.7 407 48.9
VMungo1383G3365 Vigna mungo HOM05D006061 ORTHO05D007450 1.6e-91 341.3 318 60.1
CSS0041718 Camellia sinensis var. sinensis HOM05D006061 ORTHO05D007450 3.5e-91 340.1 349 52.7
Sed0025129 Sechium edule HOM05D006061 ORTHO05D007450 1.3e-90 338.2 316 57.6
Lalb_Chr01g0019421 Lupinus albus HOM05D006061 ORTHO05D007450 2.8e-88 330.5 371 48.0
Cpa.g.sc8.207 Carica papaya HOM05D006061 ORTHO05D007450 1.8e-87 327.8 277 58.8
MELO3C024149.2 Cucumis melo HOM05D006061 ORTHO05D007450 1.1e-79 302.0 277 58.8
Cpa.g.sc8.208 Carica papaya HOM05D006061 ORTHO05D007450 2.6e-78 297.4 339 50.4
Lalb_Chr01g0019411 Lupinus albus HOM05D006061 ORTHO05D007450 7.1e-60 236.1 224 57.6
CARHR110700 Cardamine hirsuta HOM05D006061 ORTHO05D007450 6.0e-59 233.0 276 49.3
Pp3c7_21970 Physcomitrium patens HOM05D006061 ORTHO05D007450 4.8e-56 223.4 615 29.4
SEGI_05721 Sequoiadendron giganteum HOM05D006061 ORTHO05D007450 2.0e-54 218.0 321 40.5
Oeu039640.1 Olea europaea HOM05D006061 ORTHO05D007450 1.2e-51 208.8 224 47.8
VMungo1383G3184 Vigna mungo HOM05D006061 ORTHO05D007450 4.6e-51 206.8 255 47.5
unitig_8.g4624 Utricularia gibba HOM05D006061 ORTHO05D007450 2.6e-46 191.0 277 44.8
DCAR_004700 Daucus carota HOM05D000065 ORTHO05D007450 5.3e-39 166.8 391 33.8
SMO356G0042 Selaginella moellendorffii HOM05D006061 ORTHO05D007450 1.4e-36 158.7 580 25.5
Zm00001eb133830 Zea mays HOM05D006061 ORTHO05D007450 3.2e-36 157.5 266 38.7
Phvul.004G074200 Phaseolus vulgaris HOM05D006061 ORTHO05D007450 1.8e-31 141.7 138 60.1
Oeu039641.2 Olea europaea HOM05D006061 ORTHO05D007450 1.1e-28 132.5 154 43.5
Zm00001eb008990 Zea mays HOM05D006061 ORTHO05D007450 1.1e-28 132.5 149 49.0
Cc00_g31740 Coffea canephora HOM05D006061 ORTHO05D007450 7.2e-28 129.8 150 49.3
vmacro02728 Vaccinium macrocarpon HOM05D006061 ORTHO05D007450 2.7e-27 127.9 357 28.3
Zm00001eb428270 Zea mays HOM05D006061 ORTHO05D007450 6.7e-26 123.2 170 44.1
HPP92_014830 Vanilla planifolia HOM05D006061 ORTHO05D007450 5.7e-25 120.2 436 26.1
SHI26842 Sapria himalayana HOM05D006061 ORTHO05D007450 7.4e-25 119.8 150 47.3
Gorai.008G101100 Gossypium raimondii HOM05D006061 ORTHO05D007450 1.7e-24 118.6 122 52.5
Os12g0228900 Oryza sativa ssp. japonica HOM05D006061 ORTHO05D007450 4.8e-24 117.1 248 36.7
Gohir.D10G064900 Gossypium hirsutum HOM05D006061 ORTHO05D007450 1.8e-23 115.2 124 50.8
PSO675G3076 Papaver somniferum HOM05D006061 ORTHO05D007450 5.9e-22 110.2 336 31.2
Zm00001eb120120 Zea mays HOM05D006061 ORTHO05D007450 1.7e-21 108.6 118 52.5
Psat1g093320 Pisum sativum HOM05D006061 ORTHO05D007450 1.2e-19 102.4 132 40.9
CBR_g31999 Chara braunii HOM05D006061 ORTHO05D007450 1.6e-19 102.1 280 31.1
Psat0ss8385g0040 Pisum sativum HOM05D006061 ORTHO05D007450 6.1e-19 100.1 132 40.2
Rhsim13G0055400 Rhododendron simsii HOM05D006061 ORTHO05D007450 7.9e-19 99.8 122 46.7
Zm00001eb399320 Zea mays HOM05D000103 ORTHO05D007450 3.1e-15 87.8 113 45.1
CARHR174390 Cardamine hirsuta HOM05D006061 ORTHO05D007450 7.0e-15 86.7 101 45.5
SHI26843 Sapria himalayana HOM05D006061 ORTHO05D007450 2.6e-14 84.7 196 31.1
RcHm_v2.0_Chr3g0485191 Rosa chinensis HOM05D006061 ORTHO05D007450 1.0e-13 82.8 44 79.5
RcHm_v2.0_Chr6g0254781 Rosa chinensis HOM05D006061 ORTHO05D007450 1.0e-13 82.8 44 79.5
RcHm_v2.0_Chr7g0210011 Rosa chinensis HOM05D006061 ORTHO05D007450 7.2e-12 76.6 44 75.0
Zm00001eb068850 Zea mays HOM05D006061 ORTHO05D007450 4.7e-11 73.9 88 47.7
PSO541G3330 Papaver somniferum HOM05D006061 ORTHO05D007450 1.2e-09 69.3 157 34.4
SHI26848 Sapria himalayana HOM05D006061 ORTHO05D007450 2.8e-08 64.7 92 41.3


User provided reference genes

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