Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g18850 Fragaria vesca HOM05D003432 ORTHO05D046199 3.9e-48 194.5 100 100.0
FAN24G2380 Fragaria x ananassa HOM05D003432 ORTHO05D046199 1.9e-31 139.0 102 77.5
FvH4_1g09130 Fragaria vesca HOM05D003432 ORTHO05D009615 4.0e-13 78.2 60 75.0
FAN19G1389 Fragaria x ananassa HOM05D003432 ORTHO05D009615 4.0e-13 78.2 60 75.0
FAN23G2743 Fragaria x ananassa HOM05D003432 ORTHO05D009615 4.0e-13 78.2 60 75.0
FAN26G1641 Fragaria x ananassa HOM05D003432 ORTHO05D009615 4.0e-13 78.2 60 75.0
FAN26G2439 Fragaria x ananassa HOM05D003432 ORTHO05D009615 4.0e-13 78.2 60 75.0
FAN26G2501 Fragaria x ananassa HOM05D003432 ORTHO05D009615 4.0e-13 78.2 60 75.0
FAN28G0794 Fragaria x ananassa HOM05D003432 ORTHO05D009615 4.0e-13 78.2 60 75.0
FAN28G1002 Fragaria x ananassa HOM05D003432 ORTHO05D009615 4.0e-13 78.2 60 75.0
Thecc.09G072100 Theobroma cacao HOM05D003432 ORTHO05D009615 1.5e-12 76.3 63 69.8
MD15G1221700 Malus domestica HOM05D003432 ORTHO05D009615 2.0e-12 75.9 60 73.3
Prupe.7G194000 Prunus persica HOM05D003432 ORTHO05D009615 2.6e-12 75.5 60 73.3
Haze_26048 Corylus avellana HOM05D003432 ORTHO05D009615 7.6e-12 73.9 60 70.0
Duzib168G1658 Durio zibethinus HOM05D003432 ORTHO05D009615 1.0e-11 73.6 60 71.7
RcHm_v2.0_Chr2g0095521 Rosa chinensis HOM05D003432 ORTHO05D009615 1.7e-11 72.8 60 70.0
COL.COLO4_21226 Corchorus olitorius HOM05D003432 ORTHO05D009615 4.9e-11 71.2 60 68.3
Eucgr.C00779 Eucalyptus grandis HOM05D003432 ORTHO05D009615 4.9e-11 71.2 60 70.0
Potri.006G138400 Populus trichocarpa HOM05D003432 ORTHO05D009615 4.9e-11 71.2 60 66.7
MD02G1096900 Malus domestica HOM05D003432 ORTHO05D009615 6.5e-11 70.9 60 70.0
MSTRG.26491 Avicennia marina HOM05D003432 ORTHO05D009615 8.4e-11 70.5 60 66.7
CiPaw.03G202800 Carya illinoinensis HOM05D003432 ORTHO05D009615 8.4e-11 70.5 60 66.7
Glyma.15G181300 Glycine max HOM05D003432 ORTHO05D009615 1.1e-10 70.1 60 66.7
Hma1.2p1_0179F.1_g079270 Hydrangea macrophylla HOM05D003432 ORTHO05D009615 1.1e-10 70.1 65 61.5
Manes.03G043800 Manihot esculenta HOM05D003432 ORTHO05D009615 1.1e-10 70.1 60 65.0
Dinv42421 Davidia involucrata HOM05D003432 ORTHO05D009615 1.4e-10 69.7 60 65.0
Phvul.009G224600 Phaseolus vulgaris HOM05D003432 ORTHO05D009615 1.4e-10 69.7 60 65.0
VMungo1309G2248 Vigna mungo HOM05D003432 ORTHO05D009615 1.4e-10 69.7 60 65.0
QL11p001622 Quercus lobata HOM05D003432 ORTHO05D009615 1.9e-10 69.3 60 66.7
Sc08g0008990 Simmondsia chinensis HOM05D003432 ORTHO05D009615 1.9e-10 69.3 60 66.7
Lj6g0008353 Lotus japonicus HOM05D003432 ORTHO05D009615 2.5e-10 68.9 60 65.0
PGR142G4000 Punica granatum HOM05D003432 ORTHO05D009615 2.5e-10 68.9 60 63.3
Gohir.A05G035200 Gossypium hirsutum HOM05D003432 ORTHO05D009615 3.2e-10 68.6 60 65.0
Gohir.D05G036700 Gossypium hirsutum HOM05D003432 ORTHO05D009615 3.2e-10 68.6 60 65.0
Gorai.009G037200 Gossypium raimondii HOM05D003432 ORTHO05D009615 4.2e-10 68.2 60 65.0
HanXRQChr03g0060051 Helianthus annuus HOM05D003432 ORTHO05D009615 4.2e-10 68.2 60 65.0
Nn8g38560 Nelumbo nucifera HOM05D003432 ORTHO05D009615 4.2e-10 68.2 60 63.3
Sabra06G0108200 Salix brachista HOM05D003432 ORTHO05D009615 4.2e-10 68.2 60 63.3
QL11p001636 Quercus lobata HOM05D003432 ORTHO05D009615 5.5e-10 67.8 60 65.0
TAR626G1143 Trochodendron aralioides HOM05D003432 ORTHO05D009615 5.5e-10 67.8 60 61.7
Lj4C918T5 Lonicera japonica HOM05D003432 ORTHO05D009615 7.1e-10 67.4 60 63.3
Atru.chr7.1749 Acer truncatum HOM05D003432 ORTHO05D009615 1.2e-09 66.6 60 63.3
CSS0004751 Camellia sinensis var. sinensis HOM05D003432 ORTHO05D009615 1.2e-09 66.6 60 63.3
CSS0032426 Camellia sinensis var. sinensis HOM05D003432 ORTHO05D009615 1.2e-09 66.6 60 63.3
Ciclev10009188m.g Citrus clementina HOM05D003432 ORTHO05D009615 1.2e-09 66.6 60 63.3
GSVIVG01015033001 Vitis vinifera HOM05D003432 ORTHO05D009615 1.2e-09 66.6 60 65.0
arahy.Tifrunner.gnm1.ann1.67NTJL Arachis hypogaea HOM05D003432 ORTHO05D009615 1.6e-09 66.2 60 61.7
arahy.Tifrunner.gnm1.ann1.XGY8H1 Arachis hypogaea HOM05D003432 ORTHO05D009615 1.6e-09 66.2 60 61.7
Migut.L01588 Erythranthe guttata HOM05D003432 ORTHO05D009615 1.6e-09 66.2 60 63.3
Lsat_1_v5_gn_7_35340 Lactuca sativa HOM05D003432 ORTHO05D009615 1.6e-09 66.2 60 63.3
Manes.16G091300 Manihot esculenta HOM05D003432 ORTHO05D009615 1.6e-09 66.2 60 61.7
TPR.G20644 Trifolium pratense HOM05D003432 ORTHO05D009615 1.6e-09 66.2 60 63.3
CDE05G1221 Ceratophyllum demersum HOM05D003432 ORTHO05D009615 2.1e-09 65.9 60 60.0
EL10Ac8g19015 Beta vulgaris HOM05D003432 ORTHO05D009615 2.7e-09 65.5 60 61.7
AUR62028283 Chenopodium quinoa HOM05D003432 ORTHO05D009615 2.7e-09 65.5 60 61.7
Ca_18397_v3 Cicer arietinum L. HOM05D003432 ORTHO05D009615 2.7e-09 65.5 60 63.3
SalBow5G1662 Salvia bowleyana HOM05D003432 ORTHO05D009615 2.7e-09 65.5 60 61.7
Cc06_g12560 Coffea canephora HOM05D003432 ORTHO05D009615 3.5e-09 65.1 60 58.3
ATR0681G122 Amborella trichopoda HOM05D003432 ORTHO05D009615 4.6e-09 64.7 60 58.3
AUR62025280 Chenopodium quinoa HOM05D003432 ORTHO05D009615 4.6e-09 64.7 60 61.7
Sed0019831 Sechium edule HOM05D003432 ORTHO05D009615 6.0e-09 64.3 60 56.7
MELO3C015545.2 Cucumis melo HOM05D003432 ORTHO05D009615 7.9e-09 63.9 60 58.3
Dinv25526 Davidia involucrata HOM05D003432 ORTHO05D009615 1.0e-08 63.5 60 58.3
TAR468G0013 Trochodendron aralioides HOM05D003432 ORTHO05D009615 1.0e-08 63.5 60 61.7
ClCG03G014820 Citrullus lanatus HOM05D002686 ORTHO05D003222 1.3e-08 63.2 60 58.3
SGA_v2.0_scaffold21G09538 Striga asiatica HOM05D003432 ORTHO05D009615 1.3e-08 63.2 97 47.4
CsaV3_1G041330 Cucumis sativus L. HOM05D003432 ORTHO05D009615 1.8e-08 62.8 60 58.3
MBI19_g29886_MAGBIO Magnolia biondii HOM05D003432 ORTHO05D009615 1.8e-08 62.8 60 56.7
Psat1g135440 Pisum sativum HOM05D003432 ORTHO05D009615 1.8e-08 62.8 60 60.0
vmacro17099 Vaccinium macrocarpon HOM05D003432 ORTHO05D009615 1.8e-08 62.8 60 60.0
Lalb_Chr11g0074061 Lupinus albus HOM05D003432 ORTHO05D009615 3.9e-08 61.6 60 61.7
Medtr2g043370 Medicago truncatula HOM05D003432 ORTHO05D009615 5.1e-08 61.2 60 60.0
Actinidia30247 Actinidia chinensis HOM05D003432 ORTHO05D009615 6.7e-08 60.8 60 58.3
Cpa.g.sc261.4 Carica papaya HOM05D003432 ORTHO05D009615 6.7e-08 60.8 60 58.3
PSO421G0180 Papaver somniferum HOM05D003432 ORTHO05D009615 6.7e-08 60.8 61 54.1
Actinidia39631 Actinidia chinensis HOM05D003432 ORTHO05D009615 8.7e-08 60.5 60 58.3
Rhsim05G0003900 Rhododendron simsii HOM05D000736 ORTHO05D009615 8.7e-08 60.5 60 58.3
TWI34G0487 Tripterygium wilfordii HOM05D003432 ORTHO05D009615 1.5e-07 59.7 60 60.0
unitig_746.g26793 Utricularia gibba HOM05D003432 ORTHO05D009615 1.9e-07 59.3 60 51.7
Oeu055337.3 Olea europaea HOM05D003432 ORTHO05D009615 3.3e-07 58.5 59 59.3
Nitab4.5_0007773g0030 Nicotiana tabacum HOM05D003432 ORTHO05D009615 4.3e-07 58.2 59 55.9
ECA240G2858 Erigeron canadensis HOM05D003432 ORTHO05D009615 7.4e-07 57.4 61 55.7
Ah.14g084790 Amaranthus hybridus HOM05D003432 ORTHO05D009615 1.6e-06 56.2 60 53.3
Nitab4.5_0001565g0090 Nicotiana tabacum HOM05D003432 ORTHO05D009615 1.6e-06 56.2 59 54.2
Hund08851 Selenicereus undatus HOM05D003432 ORTHO05D009615 3.7e-06 55.1 60 55.0
CAN.G52.10 Capsicum annuum HOM05D003432 ORTHO05D009615 4.8e-06 54.7 60 53.3


User provided reference genes

Program Settings